Wall clock time and date at job start Wed Apr 1 2020 01:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47228 * 2 1 4 4 C 1.50700 * 109.47412 * 240.00240 * 2 1 3 5 5 H 1.08002 * 120.00194 * 239.99861 * 4 2 1 6 6 C 1.37882 * 120.00148 * 59.99622 * 4 2 1 7 7 N 1.31514 * 119.99749 * 0.02562 * 6 4 2 8 8 Si 1.86791 * 120.00302 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47078 * 90.00183 * 8 6 4 10 10 H 1.48503 * 109.47395 * 210.00071 * 8 6 4 11 11 H 1.48503 * 109.47279 * 330.00432 * 8 6 4 12 12 C 1.53003 * 109.47265 * 120.00473 * 2 1 3 13 13 N 1.46497 * 109.46635 * 299.99689 * 12 2 1 14 14 C 1.34774 * 120.00037 * 179.97438 * 13 12 2 15 15 O 1.21583 * 119.99973 * 0.02562 * 14 13 12 16 16 N 1.34773 * 120.00529 * 180.27668 * 14 13 12 17 17 C 1.39433 * 120.00350 * 174.62993 * 16 14 13 18 18 C 1.39400 * 120.14942 * 185.10009 * 17 16 14 19 19 C 1.38611 * 117.90881 * 179.74395 * 18 17 16 20 20 C 1.38780 * 118.03039 * 0.52154 * 19 18 17 21 21 S 1.76204 * 120.00050 * 179.75291 * 20 19 18 22 22 C 1.81402 * 104.44828 * 269.98159 * 21 20 19 23 23 O 1.42099 * 104.27470 * 26.04934 * 21 20 19 24 24 O 1.42094 * 104.27706 * 153.90882 * 21 20 19 25 25 N 1.31819 * 120.00291 * 359.73233 * 20 19 18 26 26 N 1.28356 * 122.27247 * 0.02562 * 25 20 19 27 27 H 1.08990 * 109.46975 * 299.99801 * 1 2 3 28 28 H 1.09001 * 109.47115 * 60.00104 * 1 2 3 29 29 H 1.08998 * 109.46674 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47521 * 180.02562 * 3 2 1 31 31 H 1.08994 * 109.47156 * 300.00296 * 3 2 1 32 32 H 1.09004 * 109.47074 * 60.00011 * 3 2 1 33 33 H 0.96994 * 120.00240 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47105 * 180.02562 * 12 2 1 35 35 H 1.08992 * 109.47319 * 59.99756 * 12 2 1 36 36 H 0.97001 * 120.00320 * 0.02562 * 13 12 2 37 37 H 0.97001 * 120.00160 * 354.64130 * 16 14 13 38 38 H 1.07993 * 121.04417 * 359.97438 * 18 17 16 39 39 H 1.08000 * 120.98554 * 180.25720 * 19 18 17 40 40 H 1.09005 * 109.47197 * 59.99771 * 22 21 20 41 41 H 1.08997 * 109.46977 * 179.97438 * 22 21 20 42 42 H 1.09001 * 109.46907 * 300.00193 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3428 -2.1615 -4.4119 10 1 2.4866 -0.1412 -5.1123 11 1 3.6294 -1.7582 -3.7123 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0307 2.4453 14 6 1.8769 -0.4915 3.6694 15 8 2.5758 -1.4801 3.7810 16 7 1.4231 0.1405 4.7699 17 6 1.6650 -0.3983 6.0330 18 6 1.1078 0.1940 7.1652 19 6 1.3741 -0.3832 8.3970 20 6 2.1873 -1.5074 8.4283 21 16 2.5650 -2.2790 9.9667 22 6 4.0769 -1.4498 10.5298 23 8 1.4692 -1.9418 10.8062 24 8 2.8361 -3.6310 9.6234 25 7 2.6768 -1.9983 7.3071 26 7 2.4301 -1.4714 6.1629 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6767 1.9564 0.8900 33 1 0.7089 1.1614 -3.4843 34 1 3.1300 -0.7209 1.2494 35 1 1.6767 -1.7489 1.2492 36 1 0.9938 0.7577 2.3564 37 1 0.9281 0.9702 4.6833 38 1 0.4851 1.0726 7.0848 39 1 0.9646 0.0322 9.3059 40 1 3.8846 -0.3831 10.6459 41 1 4.3862 -1.8691 11.4871 42 1 4.8680 -1.5984 9.7949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365527852.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:42:33 Heat of formation + Delta-G solvation = -50.149301 kcal Electronic energy + Delta-G solvation = -27050.734130 eV Core-core repulsion = 22965.832095 eV Total energy + Delta-G solvation = -4084.902036 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.51072 -41.04941 -38.40020 -38.20162 -37.05319 -36.57517 -35.13340 -34.35454 -33.05856 -31.94672 -30.30522 -27.57692 -27.56213 -27.03622 -26.28260 -25.30617 -22.49023 -20.71941 -20.66400 -20.02072 -19.29117 -18.86449 -18.24144 -17.73945 -17.41128 -16.97816 -16.64341 -16.57351 -16.20256 -15.95565 -15.42911 -15.37935 -14.82691 -14.75628 -14.71035 -14.02245 -14.00155 -13.94023 -13.62005 -13.27635 -13.19571 -13.11347 -13.06704 -12.88904 -12.64303 -12.60557 -12.25484 -12.21340 -12.13266 -11.89111 -11.51213 -11.49201 -11.42678 -11.21949 -10.74349 -10.69455 -10.42494 -10.32480 -9.87157 -8.03739 -6.18559 -1.00385 -0.60698 -0.30901 1.15884 1.41689 1.45287 1.53281 1.69340 1.82989 2.34621 2.44296 2.69348 2.94251 2.97837 3.20319 3.31781 3.47198 3.66873 3.80785 4.12231 4.17759 4.27344 4.37588 4.49987 4.55791 4.70070 4.73641 4.96341 4.97722 5.05033 5.07177 5.17989 5.19304 5.30682 5.53531 5.66085 5.67220 5.70021 6.15858 6.20814 6.42947 6.79622 6.85252 7.31893 7.48860 7.52167 8.95107 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.033038 B = 0.001961 C = 0.001901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.309719 B =14274.034145 C =14721.895545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.120 4.120 4 C -0.528 4.528 5 H 0.043 0.957 6 C 0.029 3.971 7 N -0.897 5.897 8 Si 0.943 3.057 9 H -0.280 1.280 10 H -0.282 1.282 11 H -0.277 1.277 12 C 0.166 3.834 13 N -0.711 5.711 14 C 0.684 3.316 15 O -0.578 6.578 16 N -0.641 5.641 17 C 0.340 3.660 18 C -0.143 4.143 19 C -0.016 4.016 20 C -0.537 4.537 21 S 2.521 3.479 22 C -0.615 4.615 23 O -0.948 6.948 24 O -0.969 6.969 25 N -0.155 5.155 26 N -0.296 5.296 27 H 0.041 0.959 28 H 0.063 0.937 29 H 0.016 0.984 30 H 0.018 0.982 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.260 0.740 34 H 0.039 0.961 35 H 0.037 0.963 36 H 0.411 0.589 37 H 0.441 0.559 38 H 0.216 0.784 39 H 0.217 0.783 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.280 7.924 28.269 29.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.178 4.178 4 C -0.567 4.567 5 H 0.061 0.939 6 C -0.171 4.171 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.206 1.206 10 H -0.207 1.207 11 H -0.203 1.203 12 C 0.042 3.958 13 N -0.368 5.368 14 C 0.383 3.617 15 O -0.452 6.452 16 N -0.293 5.293 17 C 0.101 3.899 18 C -0.176 4.176 19 C -0.043 4.043 20 C -0.765 4.765 21 S 2.697 3.303 22 C -0.771 4.771 23 O -0.945 6.945 24 O -0.966 6.966 25 N 0.000 5.000 26 N -0.148 5.148 27 H 0.060 0.940 28 H 0.082 0.918 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.081 0.919 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.249 0.751 37 H 0.283 0.717 38 H 0.233 0.767 39 H 0.234 0.766 40 H 0.185 0.815 41 H 0.184 0.816 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.637 5.394 27.576 28.106 hybrid contribution -0.618 1.474 -1.537 2.217 sum 0.019 6.868 26.039 26.930 Atomic orbital electron populations 1.21677 0.96945 0.98667 1.00598 1.18374 0.93374 0.93211 0.89917 1.21669 0.97978 0.97561 1.00615 1.21253 1.31711 1.12146 0.91569 0.93887 1.25410 0.95199 0.95601 1.00842 1.69887 1.36946 1.23133 1.23618 0.85794 0.78617 0.78522 0.80074 1.20627 1.20727 1.20250 1.21224 0.97023 0.94761 0.82765 1.45197 1.55138 1.33222 1.03209 1.16308 0.80893 0.83193 0.81259 1.91068 1.41119 1.27656 1.85395 1.42538 1.57266 1.27968 1.01484 1.20522 0.90922 0.91457 0.86963 1.22472 1.01728 1.03815 0.89577 1.22577 0.90175 0.90162 1.01429 1.35118 1.11221 1.10338 1.19813 1.05108 0.78516 0.74552 0.72093 1.29988 1.16588 1.16271 1.14227 1.93575 1.51898 1.84898 1.64094 1.93564 1.86604 1.33876 1.82569 1.73234 1.13163 1.19812 0.93812 1.73663 1.15003 1.09878 1.16240 0.94047 0.91824 0.96514 0.96309 0.91860 0.93989 0.92997 0.94215 0.94488 0.75148 0.71696 0.76691 0.76625 0.81458 0.81605 0.83932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.14 8.08 71.98 0.58 -4.56 16 2 C 0.05 2.32 0.50 -52.93 -0.03 2.29 16 3 C -0.12 -5.06 8.08 71.98 0.58 -4.47 16 4 C -0.53 -27.57 8.01 25.60 0.21 -27.37 16 5 H 0.04 2.32 7.74 -2.91 -0.02 2.30 16 6 C 0.03 1.53 5.15 84.66 0.44 1.96 16 7 N -0.90 -46.79 9.35 21.45 0.20 -46.59 16 8 Si 0.94 42.44 29.54 68.60 2.03 44.47 16 9 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 C 0.17 6.92 4.50 86.38 0.39 7.30 16 13 N -0.71 -22.81 4.96 -478.56 -2.37 -25.19 16 14 C 0.68 22.91 8.52 179.06 1.53 24.43 16 15 O -0.58 -25.85 14.64 -3.98 -0.06 -25.91 16 16 N -0.64 -14.16 5.40 -321.84 -1.74 -15.89 16 17 C 0.34 8.15 7.51 132.97 1.00 9.15 16 18 C -0.14 -1.72 10.07 22.64 0.23 -1.50 16 19 C -0.02 -0.18 9.60 22.49 0.22 0.04 16 20 C -0.54 -10.48 6.61 84.82 0.56 -9.91 16 21 S 2.52 36.35 5.87 -56.49 -0.33 36.02 16 22 C -0.62 -1.63 10.80 113.37 1.22 -0.40 16 23 O -0.95 -15.69 17.17 -127.65 -2.19 -17.89 16 24 O -0.97 -25.02 17.75 -127.65 -2.27 -27.29 16 25 N -0.16 -4.74 11.20 -55.16 -0.62 -5.36 16 26 N -0.30 -10.13 9.08 -54.93 -0.50 -10.63 16 27 H 0.04 1.41 6.86 -2.39 -0.02 1.39 16 28 H 0.06 3.03 6.07 -2.39 -0.01 3.01 16 29 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 2.99 6.07 -2.39 -0.01 2.97 16 32 H 0.04 1.40 6.86 -2.39 -0.02 1.39 16 33 H 0.26 13.11 8.31 -92.71 -0.77 12.34 16 34 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.41 10.44 6.18 -92.71 -0.57 9.87 16 37 H 0.44 4.85 8.73 -92.71 -0.81 4.04 16 38 H 0.22 0.12 8.06 -2.91 -0.02 0.10 16 39 H 0.22 0.42 7.64 -2.91 -0.02 0.40 16 40 H 0.17 -0.61 8.14 -2.39 -0.02 -0.63 16 41 H 0.17 -0.32 8.14 -2.39 -0.02 -0.34 16 42 H 0.14 0.46 8.14 -2.39 -0.02 0.44 16 Total: -1.00 -89.26 363.23 -1.23 -90.49 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -0.30 Total: 6.80 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 6.92 Total: -3.04 kcal Atomic # 7 Polarization: -98.63 SS G_CDS: -5.03 Total: -103.66 kcal Atomic # 8 Polarization: -66.57 SS G_CDS: -4.52 Total: -71.08 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Atomic # 16 Polarization: 36.35 SS G_CDS: -0.33 Total: 36.02 kcal Total: -89.26 -1.23 -90.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365527852.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.340 kcal (2) G-P(sol) polarization free energy of solvation -89.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds