Wall clock time and date at job start Wed Apr 1 2020 01:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.50700 * 109.46950 * 179.97438 * 7 6 4 9 9 O 1.21542 * 120.00208 * 359.97438 * 8 7 6 10 10 N 1.32422 * 119.99682 * 179.97438 * 8 7 6 11 11 S 1.49349 * 119.99791 * 179.97438 * 10 8 7 12 12 C 1.81401 * 107.52041 * 180.02562 * 11 10 8 13 13 C 1.81396 * 107.52459 * 295.10421 * 11 10 8 14 14 O 1.42103 * 107.24239 * 57.55783 * 11 10 8 15 15 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 16 16 N 1.30448 * 108.02337 * 359.61207 * 15 3 2 17 17 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 18 18 C 1.46503 * 125.75762 * 359.97438 * 17 2 1 19 19 C 1.50696 * 109.46974 * 90.00112 * 18 17 2 20 20 H 1.08001 * 120.00163 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99873 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99984 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00024 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47063 * 90.00165 * 23 21 19 25 25 H 1.48501 * 109.47045 * 210.00089 * 23 21 19 26 26 H 1.48501 * 109.46990 * 330.00178 * 23 21 19 27 27 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 28 28 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 29 29 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 30 30 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 31 31 H 1.09004 * 109.46587 * 299.99661 * 7 6 4 32 32 H 1.08993 * 109.47306 * 59.99553 * 7 6 4 33 33 H 1.08998 * 109.47143 * 60.00173 * 12 11 10 34 34 H 1.09002 * 109.47409 * 179.97438 * 12 11 10 35 35 H 1.08996 * 109.47136 * 299.99751 * 12 11 10 36 36 H 1.09000 * 109.47124 * 58.46115 * 13 11 10 37 37 H 1.08997 * 109.47180 * 178.46158 * 13 11 10 38 38 H 1.09001 * 109.47203 * 298.46645 * 13 11 10 39 39 H 1.08000 * 125.99145 * 179.77305 * 15 3 2 40 40 H 1.09004 * 109.46911 * 210.00324 * 18 17 2 41 41 H 1.09002 * 109.46643 * 329.99944 * 18 17 2 42 42 H 0.96997 * 120.00146 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 6 2.3644 4.9095 0.0051 8 6 3.5717 5.8114 0.0126 9 8 4.6886 5.3318 0.0178 10 7 3.4158 7.1264 0.0133 11 16 4.6122 8.0202 0.0213 12 6 4.0144 9.7329 0.0208 13 6 5.4801 7.7572 1.5923 14 8 5.3919 7.6905 -1.1201 15 6 3.6589 0.6498 -0.0059 16 7 3.6340 -0.6545 -0.0007 17 7 2.3016 -1.0822 -0.0005 18 6 1.8500 -2.4759 -0.0006 19 6 1.6946 -2.9535 -1.4214 20 1 1.9103 -2.2855 -2.2423 21 6 1.2772 -4.2431 -1.6734 22 7 1.0141 -5.0563 -0.6739 23 14 1.0839 -4.8349 -3.4347 24 1 2.3648 -5.4227 -3.9027 25 1 0.0152 -5.8641 -3.4966 26 1 0.7182 -3.6884 -4.3048 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 3.7462 3.2972 0.0098 31 1 1.7699 5.1049 -0.8874 32 1 1.7618 5.1023 0.8925 33 1 3.4048 9.9051 0.9078 34 1 4.8649 10.4146 0.0270 35 1 3.4144 9.9080 -0.8721 36 1 5.7603 6.7076 1.6813 37 1 6.3768 8.3762 1.6201 38 1 4.8246 8.0295 2.4195 39 1 4.5448 1.2675 -0.0108 40 1 2.5848 -3.0960 0.5130 41 1 0.8915 -2.5472 0.5136 42 1 0.7200 -5.9635 -0.8511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001418142481.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:11 Heat of formation + Delta-G solvation = -24.854979 kcal Electronic energy + Delta-G solvation = -26766.580691 eV Core-core repulsion = 22682.775500 eV Total energy + Delta-G solvation = -4083.805191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.33511 -41.06925 -39.79470 -37.46080 -35.84498 -35.47008 -34.43546 -33.81443 -32.75901 -30.82775 -30.07837 -29.93333 -28.67674 -27.77203 -25.34188 -23.60213 -22.39505 -21.23991 -20.65323 -19.24304 -18.86126 -18.64093 -17.84578 -17.50025 -17.28171 -16.76997 -16.52914 -16.45055 -16.24768 -15.97005 -15.52712 -15.22557 -15.03677 -14.51208 -14.34443 -14.15370 -14.08196 -14.02844 -14.01135 -13.83275 -13.66980 -13.56908 -13.41425 -13.09185 -13.05921 -12.96719 -12.70408 -12.31205 -12.12839 -11.85648 -11.74517 -11.22431 -11.01568 -10.85769 -10.76141 -10.75632 -10.27314 -10.16439 -9.46308 -8.37873 -6.53965 -1.49762 0.67029 1.14890 1.29008 1.37074 1.38103 1.48445 1.56355 1.70175 2.02125 2.32310 2.44107 2.51989 2.94099 3.06761 3.63022 3.74871 3.76384 4.01703 4.06631 4.10753 4.12978 4.20115 4.24565 4.48762 4.50779 4.59648 4.66489 4.80964 4.87499 4.89967 4.93957 5.07849 5.16893 5.25656 5.46579 5.49873 5.63327 5.74896 6.04990 6.54686 6.55765 6.80061 6.82935 7.16754 7.30186 8.70101 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.027234 B = 0.001959 C = 0.001942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.888793 B =14289.869988 C =14415.191642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.150 3.850 3 C -0.332 4.332 4 C 0.609 3.391 5 O -0.576 6.576 6 N -0.718 5.718 7 C 0.127 3.873 8 C 0.540 3.460 9 O -0.606 6.606 10 N -1.133 6.133 11 S 2.263 3.737 12 C -0.489 4.489 13 C -0.607 4.607 14 O -0.999 6.999 15 C 0.076 3.924 16 N -0.335 5.335 17 N -0.337 5.337 18 C 0.267 3.733 19 C -0.556 4.556 20 H 0.050 0.950 21 C 0.024 3.976 22 N -0.915 5.915 23 Si 0.972 3.028 24 H -0.273 1.273 25 H -0.269 1.269 26 H -0.271 1.271 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.411 0.589 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.186 0.814 34 H 0.181 0.819 35 H 0.156 0.844 36 H 0.111 0.889 37 H 0.159 0.841 38 H 0.169 0.831 39 H 0.215 0.785 40 H 0.032 0.968 41 H 0.054 0.946 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.300 36.609 7.452 37.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.013 3.987 3 C -0.347 4.347 4 C 0.399 3.601 5 O -0.457 6.457 6 N -0.372 5.372 7 C -0.002 4.002 8 C 0.327 3.673 9 O -0.489 6.489 10 N -1.039 6.039 11 S 2.467 3.533 12 C -0.649 4.649 13 C -0.764 4.764 14 O -0.985 6.985 15 C -0.110 4.110 16 N -0.154 5.154 17 N -0.114 5.114 18 C 0.148 3.852 19 C -0.594 4.594 20 H 0.068 0.932 21 C -0.178 4.178 22 N -0.553 5.553 23 Si 0.796 3.204 24 H -0.199 1.199 25 H -0.194 1.194 26 H -0.196 1.196 27 H 0.102 0.898 28 H 0.092 0.908 29 H 0.123 0.877 30 H 0.249 0.751 31 H 0.115 0.885 32 H 0.132 0.868 33 H 0.204 0.796 34 H 0.198 0.802 35 H 0.174 0.826 36 H 0.129 0.871 37 H 0.177 0.823 38 H 0.187 0.813 39 H 0.232 0.768 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.606 35.075 6.760 36.158 hybrid contribution 0.485 -0.572 -0.472 0.886 sum 6.091 34.504 6.288 35.597 Atomic orbital electron populations 1.20574 0.85367 1.04281 1.04071 1.21982 0.96097 0.86434 0.94137 1.19900 0.93212 0.93024 1.28566 1.17022 0.84870 0.83611 0.74630 1.90666 1.17328 1.84627 1.53076 1.45490 1.10679 1.04990 1.76028 1.20825 0.94799 0.79002 1.05530 1.19765 0.89589 0.85830 0.72135 1.90837 1.27278 1.78860 1.51909 1.70199 1.49780 1.15920 1.68002 1.13498 0.74403 0.85425 0.80017 1.28945 1.15047 1.04614 1.16325 1.29844 1.15683 1.12436 1.18419 1.93535 1.73834 1.83156 1.47962 1.24391 0.97702 0.91705 0.97251 1.77095 0.98505 1.14084 1.25764 1.49138 1.03252 1.07857 1.51136 1.19408 0.95427 0.72160 0.98201 1.21384 1.47979 0.98507 0.91532 0.93176 1.25726 0.93820 0.95895 1.02323 1.69991 1.44802 1.07562 1.32974 0.85344 0.78341 0.78196 0.78549 1.19898 1.19368 1.19557 0.89794 0.90764 0.87708 0.75131 0.88510 0.86771 0.79632 0.80155 0.82598 0.87068 0.82273 0.81283 0.76837 0.95003 0.92783 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.26 9.57 71.24 0.68 -2.58 16 2 C 0.15 6.56 7.01 42.14 0.30 6.86 16 3 C -0.33 -13.26 6.13 -20.15 -0.12 -13.39 16 4 C 0.61 22.19 7.81 86.67 0.68 22.87 16 5 O -0.58 -22.80 14.84 -4.04 -0.06 -22.86 16 6 N -0.72 -21.85 5.52 -470.10 -2.59 -24.45 16 7 C 0.13 3.31 6.23 85.63 0.53 3.85 16 8 C 0.54 13.70 7.44 88.02 0.65 14.35 16 9 O -0.61 -18.47 13.67 11.99 0.16 -18.31 16 10 N -1.13 -18.92 10.20 -176.98 -1.80 -20.72 16 11 S 2.26 18.36 4.53 -56.49 -0.26 18.11 16 12 C -0.49 3.97 10.89 113.37 1.23 5.21 16 13 C -0.61 -1.51 10.55 113.37 1.20 -0.32 16 14 O -1.00 -23.22 17.28 -133.14 -2.30 -25.52 16 15 C 0.08 2.95 11.50 85.65 0.99 3.94 16 16 N -0.33 -15.70 12.50 -56.28 -0.70 -16.40 16 17 N -0.34 -16.49 3.56 -336.70 -1.20 -17.69 16 18 C 0.27 14.28 5.97 85.63 0.51 14.79 16 19 C -0.56 -31.71 9.39 25.60 0.24 -31.47 16 20 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 21 C 0.02 1.32 5.46 84.65 0.46 1.78 16 22 N -0.92 -52.25 13.29 21.45 0.28 -51.96 16 23 Si 0.97 44.02 29.54 68.60 2.03 46.05 16 24 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 27 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 28 H 0.07 2.77 7.05 -2.39 -0.02 2.76 16 29 H 0.10 3.76 6.50 -2.39 -0.02 3.74 16 30 H 0.41 12.01 6.39 -92.71 -0.59 11.42 16 31 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 32 H 0.11 2.61 8.14 -2.39 -0.02 2.60 16 33 H 0.19 -2.73 8.14 -2.39 -0.02 -2.75 16 34 H 0.18 -2.70 8.14 -2.39 -0.02 -2.72 16 35 H 0.16 -1.14 8.14 -2.39 -0.02 -1.16 16 36 H 0.11 1.24 7.07 -2.39 -0.02 1.23 16 37 H 0.16 -0.65 8.14 -2.39 -0.02 -0.67 16 38 H 0.17 -0.82 8.14 -2.39 -0.02 -0.84 16 39 H 0.22 6.30 7.50 -2.91 -0.02 6.28 16 40 H 0.03 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.05 2.87 7.02 -2.39 -0.02 2.85 16 42 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -95.98 375.11 1.38 -94.60 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.47 Total: 13.25 kcal Atomic # 6 Polarization: 18.56 SS G_CDS: 7.35 Total: 25.90 kcal Atomic # 7 Polarization: -125.20 SS G_CDS: -6.02 Total: -131.22 kcal Atomic # 8 Polarization: -64.50 SS G_CDS: -2.20 Total: -66.69 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Atomic # 16 Polarization: 18.36 SS G_CDS: -0.26 Total: 18.11 kcal Total: -95.98 1.38 -94.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418142481.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.748 kcal (2) G-P(sol) polarization free energy of solvation -95.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds