Wall clock time and date at job start Wed Apr 1 2020 01:05:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38040 * 126.29387 * 2 1 4 4 C 1.47437 * 126.41410 * 0.02562 * 3 2 1 5 5 O 1.21603 * 119.99932 * 0.28960 * 4 3 2 6 6 N 1.34778 * 119.99768 * 180.28927 * 4 3 2 7 7 N 1.36599 * 119.99523 * 180.02562 * 6 4 3 8 8 C 1.46481 * 110.99638 * 245.85510 * 7 6 4 9 9 C 1.53176 * 109.89814 * 163.00356 * 8 7 6 10 10 S 1.81817 * 108.68223 * 62.63343 * 9 8 7 11 11 O 1.42101 * 108.70524 * 193.42762 * 10 9 8 12 12 O 1.42104 * 108.82778 * 61.98085 * 10 9 8 13 13 C 1.81820 * 101.01894 * 307.68531 * 10 9 8 14 14 C 1.46469 * 111.00228 * 119.99873 * 7 6 4 15 15 C 1.41283 * 107.17100 * 180.24973 * 3 2 1 16 16 N 1.30444 * 108.02347 * 359.77393 * 15 3 2 17 17 N 1.34265 * 126.28665 * 179.86672 * 2 1 3 18 18 C 1.46491 * 125.75547 * 0.02562 * 17 2 1 19 19 C 1.50702 * 109.46957 * 269.71241 * 18 17 2 20 20 H 1.08002 * 120.00299 * 0.02562 * 19 18 17 21 21 C 1.37884 * 119.99942 * 179.72213 * 19 18 17 22 22 N 1.31514 * 119.99698 * 0.28408 * 21 19 18 23 23 Si 1.86794 * 119.99837 * 180.27476 * 21 19 18 24 24 H 1.48496 * 109.47341 * 0.02562 * 23 21 19 25 25 H 1.48508 * 109.46983 * 120.00379 * 23 21 19 26 26 H 1.48503 * 109.47491 * 240.00192 * 23 21 19 27 27 H 1.09004 * 109.47192 * 270.13257 * 1 2 3 28 28 H 1.08999 * 109.47144 * 30.13117 * 1 2 3 29 29 H 1.08998 * 109.47399 * 150.13279 * 1 2 3 30 30 H 0.96999 * 119.99976 * 359.97438 * 6 4 3 31 31 H 1.09003 * 109.39315 * 283.13144 * 8 7 6 32 32 H 1.08997 * 109.39753 * 42.86985 * 8 7 6 33 33 H 1.08995 * 109.60525 * 302.87361 * 9 8 7 34 34 H 1.09003 * 109.73412 * 182.46947 * 9 8 7 35 35 H 1.08999 * 109.59837 * 292.55730 * 13 10 9 36 36 H 1.08999 * 109.59984 * 172.07516 * 13 10 9 37 37 H 1.09000 * 109.39560 * 317.13139 * 14 7 6 38 38 H 1.09004 * 109.39657 * 76.86567 * 14 7 6 39 39 H 1.08003 * 125.99085 * 179.78105 * 15 3 2 40 40 H 1.09004 * 109.47166 * 149.71507 * 18 17 2 41 41 H 1.08994 * 109.47507 * 29.71214 * 18 17 2 42 42 H 0.97005 * 119.99651 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8859 2.5203 0.0005 5 8 0.6996 2.7878 0.0064 6 7 2.8000 3.5107 -0.0054 7 7 2.3940 4.8149 -0.0044 8 6 2.7651 5.4811 -1.2550 9 6 1.9569 6.7721 -1.4178 10 16 2.3770 7.8981 -0.0534 11 8 1.4204 8.9484 -0.0184 12 8 3.7594 8.2178 -0.1317 13 6 2.1091 6.8174 1.3840 14 6 2.8972 5.5204 1.1764 15 6 3.6590 0.6498 -0.0059 16 7 3.6340 -0.6544 -0.0043 17 7 2.3016 -1.0823 0.0025 18 6 1.8500 -2.4758 0.0052 19 6 1.7014 -2.9529 1.4270 20 1 1.9210 -2.2847 2.2466 21 6 1.2790 -4.2406 1.6815 22 7 1.0112 -5.0541 0.6835 23 14 1.0875 -4.8295 3.4438 24 1 1.4484 -3.7305 4.3750 25 1 -0.3215 -5.2350 3.6798 26 1 1.9826 -5.9911 3.6777 27 1 -0.3634 0.0024 1.0277 28 1 -0.3633 0.8888 -0.5159 29 1 -0.3634 -0.8911 -0.5118 30 1 3.7462 3.2972 -0.0097 31 1 3.8286 5.7197 -1.2362 32 1 2.5591 4.8167 -2.0941 33 1 0.8918 6.5429 -1.3880 34 1 2.2032 7.2430 -2.3695 35 1 1.0474 6.5892 1.4771 36 1 2.4588 7.3172 2.2874 37 1 2.7844 4.8837 2.0539 38 1 3.9519 5.7564 1.0349 39 1 4.5449 1.2675 -0.0107 40 1 2.5823 -3.0961 -0.5115 41 1 0.8891 -2.5474 -0.5043 42 1 0.7145 -5.9601 0.8625 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001418485208.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:23 Heat of formation + Delta-G solvation = 8.363603 kcal Electronic energy + Delta-G solvation = -27507.903668 eV Core-core repulsion = 23425.538942 eV Total energy + Delta-G solvation = -4082.364726 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -40.95146 -39.89106 -37.72905 -37.22602 -36.43583 -34.05475 -33.58542 -32.41854 -32.14801 -31.24406 -29.08549 -27.12444 -26.58245 -24.63036 -23.61379 -22.66323 -21.83800 -20.11410 -19.51321 -19.03206 -18.11127 -17.16165 -16.82900 -16.79394 -16.64455 -16.29091 -16.05912 -15.30228 -14.77729 -14.67310 -14.50447 -14.28733 -13.91116 -13.54039 -13.41909 -13.23481 -12.92295 -12.84661 -12.64971 -12.58632 -12.49200 -12.41323 -12.33397 -12.17593 -11.86342 -11.54995 -11.21743 -11.15800 -10.95433 -10.60462 -10.42497 -10.29118 -9.97691 -9.59601 -9.42098 -9.24059 -8.76521 -8.68771 -8.04925 -6.38927 -4.46839 -0.42688 2.07274 2.19127 2.26220 2.69018 3.13342 3.19775 3.21000 3.22652 3.31765 3.57528 3.76495 3.85249 3.99185 4.19846 4.34331 4.42131 4.49856 4.55288 4.69629 4.92140 5.00107 5.14145 5.19182 5.23386 5.25036 5.33243 5.44108 5.65318 5.79455 6.05756 6.17386 6.36281 6.44969 6.70196 6.83886 7.05186 7.10904 7.45222 7.50388 7.69754 7.71608 8.27662 8.58391 8.63125 9.20412 10.69374 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.028154 B = 0.002167 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.287451 B =12920.823597 C =13072.621387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.170 3.830 3 C -0.331 4.331 4 C 0.621 3.379 5 O -0.526 6.526 6 N -0.581 5.581 7 N -0.310 5.310 8 C 0.047 3.953 9 C -0.592 4.592 10 S 2.412 3.588 11 O -0.940 6.940 12 O -0.939 6.939 13 C -0.592 4.592 14 C 0.047 3.953 15 C 0.057 3.943 16 N -0.293 5.293 17 N -0.312 5.312 18 C 0.250 3.750 19 C -0.540 4.540 20 H 0.066 0.934 21 C 0.067 3.933 22 N -0.889 5.889 23 Si 0.908 3.092 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.280 1.280 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.386 0.614 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.148 0.852 34 H 0.143 0.857 35 H 0.148 0.852 36 H 0.143 0.857 37 H 0.109 0.891 38 H 0.064 0.936 39 H 0.175 0.825 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.181 21.303 -2.886 21.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.033 3.967 3 C -0.348 4.348 4 C 0.412 3.588 5 O -0.401 6.401 6 N -0.328 5.328 7 N -0.127 5.127 8 C -0.082 4.082 9 C -0.722 4.722 10 S 2.594 3.406 11 O -0.937 6.937 12 O -0.936 6.936 13 C -0.722 4.722 14 C -0.082 4.082 15 C -0.130 4.130 16 N -0.113 5.113 17 N -0.089 5.089 18 C 0.133 3.867 19 C -0.579 4.579 20 H 0.084 0.916 21 C -0.137 4.137 22 N -0.526 5.526 23 Si 0.735 3.265 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.206 1.206 27 H 0.103 0.897 28 H 0.112 0.888 29 H 0.092 0.908 30 H 0.225 0.775 31 H 0.082 0.918 32 H 0.126 0.874 33 H 0.166 0.834 34 H 0.161 0.839 35 H 0.166 0.834 36 H 0.161 0.839 37 H 0.127 0.873 38 H 0.082 0.918 39 H 0.192 0.808 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.727 20.897 -2.939 21.278 hybrid contribution 0.582 -0.506 0.933 1.210 sum 3.309 20.391 -2.006 20.755 Atomic orbital electron populations 1.20595 0.86674 1.03898 1.04069 1.21457 0.94989 0.86409 0.93884 1.19487 0.93223 0.91772 1.30346 1.17201 0.84759 0.82588 0.74267 1.90696 1.16285 1.83773 1.49303 1.44990 1.08901 0.98998 1.79880 1.61707 1.57406 0.92280 1.01338 1.22294 0.97410 0.94382 0.94119 1.30166 1.11952 1.10733 1.19366 1.08226 0.75549 0.77313 0.79529 1.93610 1.63273 1.51010 1.85768 1.93602 1.31902 1.82376 1.85713 1.30173 1.11627 1.10191 1.20239 1.22275 0.96572 0.93877 0.95461 1.23723 0.96219 0.92711 1.00381 1.77157 0.98662 1.12227 1.23253 1.49396 1.02444 1.08370 1.48671 1.19887 0.96471 0.70768 0.99550 1.21270 1.47377 0.98268 0.90935 0.91591 1.24929 0.94404 0.95997 0.98352 1.69921 1.44343 1.07227 1.31140 0.86264 0.78003 0.78849 0.83372 1.19527 1.20522 1.20553 0.89691 0.88753 0.90760 0.77515 0.91828 0.87384 0.83372 0.83937 0.83373 0.83913 0.87287 0.91751 0.80789 0.92452 0.92462 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.59 9.56 36.01 0.34 -1.25 16 2 C 0.17 3.22 7.01 -81.60 -0.57 2.65 16 3 C -0.33 -5.46 6.13 -105.07 -0.64 -6.11 16 4 C 0.62 9.16 7.92 -12.51 -0.10 9.06 16 5 O -0.53 -9.20 15.17 5.27 0.08 -9.12 16 6 N -0.58 -6.06 4.72 30.44 0.14 -5.91 16 7 N -0.31 -2.82 4.26 -114.22 -0.49 -3.30 16 8 C 0.05 0.33 5.69 -3.96 -0.02 0.30 16 9 C -0.59 -3.36 6.58 37.25 0.25 -3.11 16 10 S 2.41 17.11 5.34 -107.50 -0.57 16.53 16 11 O -0.94 -10.04 18.11 -57.81 -1.05 -11.08 16 12 O -0.94 -9.35 18.10 -57.81 -1.05 -10.40 16 13 C -0.59 -3.40 6.57 37.25 0.24 -3.15 16 14 C 0.05 0.33 5.69 -3.97 -0.02 0.31 16 15 C 0.06 0.89 11.50 -16.98 -0.20 0.70 16 16 N -0.29 -5.91 12.50 30.86 0.39 -5.52 16 17 N -0.31 -6.67 3.56 -57.78 -0.21 -6.88 16 18 C 0.25 5.99 5.97 -5.20 -0.03 5.95 16 19 C -0.54 -14.10 9.39 -34.44 -0.32 -14.42 16 20 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 21 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -24.02 13.29 55.43 0.74 -23.28 16 23 Si 0.91 20.33 29.54 -169.99 -5.02 15.30 16 24 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 28 H 0.09 1.51 6.52 -51.93 -0.34 1.17 16 29 H 0.07 1.23 7.05 -51.93 -0.37 0.86 16 30 H 0.39 2.99 7.78 -185.16 -1.44 1.55 16 31 H 0.06 0.35 7.93 -51.93 -0.41 -0.06 16 32 H 0.11 0.79 8.11 -51.93 -0.42 0.37 16 33 H 0.15 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.14 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.15 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.14 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.11 0.81 8.11 -51.93 -0.42 0.39 16 38 H 0.06 0.35 7.93 -51.93 -0.41 -0.06 16 39 H 0.18 1.84 7.50 -52.48 -0.39 1.44 16 40 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 41 H 0.06 1.36 7.01 -51.93 -0.36 0.99 16 42 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 366.27 15.07 5.52 5.52 Total: -1.00 -35.91 366.27 -9.34 -45.25 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -6.65 Total: 0.31 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: -1.17 Total: -7.41 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 0.57 Total: -44.90 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -2.01 Total: -30.60 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 17.11 SS G_CDS: -0.57 Total: 16.53 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.91 -9.34 -45.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001418485208.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.614 kcal (2) G-P(sol) polarization free energy of solvation -35.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds