Wall clock time and date at job start Wed Apr 1 2020 00:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86803 * 119.99799 * 2 1 4 4 H 1.48502 * 109.47064 * 269.99736 * 3 2 1 5 5 H 1.48499 * 109.47212 * 30.00401 * 3 2 1 6 6 H 1.48511 * 109.46958 * 150.00020 * 3 2 1 7 7 C 1.37883 * 120.00345 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99736 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99818 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47319 * 180.02562 * 9 7 2 11 11 C 1.34963 * 125.98010 * 125.00174 * 10 9 7 12 12 C 1.35245 * 107.85990 * 179.97438 * 11 10 9 13 13 C 1.40402 * 107.86627 * 0.22862 * 12 11 10 14 14 N 1.40193 * 125.97069 * 179.77501 * 13 12 11 15 15 C 1.34776 * 120.00043 * 359.97438 * 14 13 12 16 16 O 1.21594 * 120.00136 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00060 * 180.02562 * 15 14 13 18 18 C 1.46502 * 120.00065 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47100 * 179.97438 * 18 17 15 20 20 H 1.08998 * 110.01244 * 54.30337 * 19 18 17 21 21 C 1.53883 * 110.02590 * 175.67574 * 19 18 17 22 22 C 1.54163 * 108.70248 * 166.47244 * 21 19 18 23 23 S 1.82914 * 105.08695 * 332.09672 * 22 21 19 24 24 O 1.42105 * 109.35604 * 115.52110 * 23 22 21 25 25 O 1.42102 * 109.35455 * 248.58717 * 23 22 21 26 26 C 1.55045 * 110.02960 * 292.91971 * 19 18 17 27 27 N 1.31205 * 108.05359 * 359.61542 * 13 12 11 28 28 H 0.97001 * 120.00648 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47248 * 59.99917 * 9 7 2 30 30 H 1.09005 * 109.47505 * 300.00463 * 9 7 2 31 31 H 1.07999 * 126.06572 * 359.97438 * 11 10 9 32 32 H 1.08002 * 126.06264 * 179.97438 * 12 11 10 33 33 H 0.96998 * 120.00555 * 179.97438 * 14 13 12 34 34 H 0.96998 * 120.00537 * 359.97438 * 17 15 14 35 35 H 1.08997 * 109.47269 * 300.00285 * 18 17 15 36 36 H 1.09006 * 109.47225 * 59.99954 * 18 17 15 37 37 H 1.08997 * 109.64663 * 286.32636 * 21 19 18 38 38 H 1.09000 * 109.64356 * 46.62532 * 21 19 18 39 39 H 1.09001 * 110.31639 * 90.99545 * 22 21 19 40 40 H 1.08999 * 110.32133 * 213.18836 * 22 21 19 41 41 H 1.08995 * 110.79284 * 316.54116 * 26 19 18 42 42 H 1.09000 * 110.78767 * 80.00867 * 26 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0005 11 6 2.2421 -4.6224 0.8941 12 6 3.2604 -5.4429 0.5492 13 6 3.8716 -4.9122 -0.5980 14 7 4.9712 -5.4601 -1.2734 15 6 5.5367 -6.5993 -0.8275 16 8 5.0929 -7.1522 0.1603 17 7 6.5941 -7.1257 -1.4765 18 6 7.2084 -8.3643 -0.9921 19 6 8.3795 -8.7423 -1.9014 20 1 9.0762 -7.9076 -1.9787 21 6 9.1015 -9.9813 -1.3432 22 6 10.0406 -10.5383 -2.4315 23 16 9.2692 -10.0562 -4.0184 24 8 10.1265 -9.1539 -4.7040 25 8 8.7894 -11.2182 -4.6809 26 6 7.8559 -9.1290 -3.3086 27 7 3.2316 -3.8158 -0.9294 28 1 -0.4851 0.8400 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8897 31 1 1.5781 -4.7521 1.7359 32 1 3.5541 -6.3440 1.0671 33 1 5.3251 -5.0193 -2.0617 34 1 6.9480 -6.6849 -2.2648 35 1 7.5708 -8.2166 0.0252 36 1 6.4685 -9.1648 -1.0016 37 1 9.6833 -9.7018 -0.4649 38 1 8.3684 -10.7398 -1.0686 39 1 11.0310 -10.0921 -2.3412 40 1 10.1054 -11.6237 -2.3563 41 1 6.9750 -9.7663 -3.2320 42 1 7.6406 -8.2387 -3.8994 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001425302743.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:23 Heat of formation + Delta-G solvation = -14.312557 kcal Electronic energy + Delta-G solvation = -26389.689691 eV Core-core repulsion = 22306.341653 eV Total energy + Delta-G solvation = -4083.348038 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.78656 -39.74634 -38.00564 -37.51486 -36.49886 -34.80818 -34.40901 -33.32608 -31.14752 -30.47544 -29.31703 -27.80396 -26.56724 -24.56646 -23.04368 -21.72909 -21.48829 -20.42079 -19.85445 -19.35168 -18.13302 -17.54269 -17.04121 -16.69925 -16.58273 -16.23525 -15.83401 -15.71806 -15.15466 -14.91317 -14.73019 -14.57134 -14.23973 -13.93188 -13.74009 -13.46529 -12.86343 -12.69025 -12.67624 -12.53635 -12.46186 -12.40655 -12.31639 -12.21267 -11.78410 -11.59096 -11.23547 -11.05859 -10.90906 -10.83026 -10.46183 -10.27245 -10.14645 -9.73899 -9.52497 -9.37314 -8.64357 -8.13111 -7.44521 -6.25234 -4.30281 -0.51660 1.96899 2.26359 2.62159 3.02125 3.06508 3.22841 3.28666 3.33229 3.39614 3.49183 3.68814 3.79733 3.87528 3.96283 4.16511 4.21017 4.28112 4.36141 4.49688 4.77140 4.91050 5.04401 5.07823 5.09873 5.18862 5.31282 5.41486 5.52700 5.77804 6.08553 6.22218 6.50031 6.52458 6.83798 6.97058 7.07794 7.45691 7.68103 7.78868 7.93145 8.04792 8.50257 8.63941 8.79565 9.35294 10.83437 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.023123 B = 0.001774 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.608525 B =15782.596478 C =16350.016573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.061 3.939 3 Si 0.908 3.092 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.528 4.528 8 H 0.069 0.931 9 C 0.258 3.742 10 N -0.320 5.320 11 C 0.051 3.949 12 C -0.286 4.286 13 C 0.274 3.726 14 N -0.643 5.643 15 C 0.714 3.286 16 O -0.566 6.566 17 N -0.746 5.746 18 C 0.155 3.845 19 C -0.103 4.103 20 H 0.105 0.895 21 C -0.108 4.108 22 C -0.592 4.592 23 S 2.387 3.613 24 O -0.936 6.936 25 O -0.938 6.938 26 C -0.588 4.588 27 N -0.307 5.307 28 H 0.267 0.733 29 H 0.045 0.955 30 H 0.057 0.943 31 H 0.168 0.832 32 H 0.161 0.839 33 H 0.407 0.593 34 H 0.397 0.603 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.144 0.856 42 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.039 -21.614 -3.333 28.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.566 4.566 8 H 0.087 0.913 9 C 0.141 3.859 10 N -0.102 5.102 11 C -0.099 4.099 12 C -0.318 4.318 13 C 0.020 3.980 14 N -0.293 5.293 15 C 0.413 3.587 16 O -0.442 6.442 17 N -0.404 5.404 18 C 0.030 3.970 19 C -0.123 4.123 20 H 0.123 0.877 21 C -0.147 4.147 22 C -0.722 4.722 23 S 2.571 3.429 24 O -0.933 6.933 25 O -0.935 6.935 26 C -0.718 4.718 27 N -0.138 5.138 28 H 0.077 0.923 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.185 0.815 32 H 0.178 0.822 33 H 0.242 0.758 34 H 0.231 0.769 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.162 0.838 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 18.577 -21.146 -4.191 28.458 hybrid contribution 0.541 0.948 0.539 1.217 sum 19.118 -20.199 -3.651 28.050 Atomic orbital electron populations 1.69911 1.06038 1.27630 1.49754 1.24950 0.94991 0.99560 0.94633 0.86324 0.79644 0.82132 0.78352 1.20345 1.20993 1.19745 1.21251 0.93979 0.89383 1.52035 0.91322 1.19741 0.85615 0.81291 0.99265 1.49061 1.23277 1.19735 1.18095 1.22562 1.00346 0.90188 0.96784 1.21500 1.01972 1.06421 1.01903 1.18772 0.90608 0.94182 0.94412 1.41359 1.31209 1.25099 1.31601 1.15581 0.80005 0.80222 0.82918 1.90880 1.64366 1.62214 1.26692 1.44955 1.33934 1.28176 1.33294 1.21056 0.93045 0.85954 0.96951 1.22155 0.98161 0.99712 0.92286 0.87670 1.21870 0.97734 0.96593 0.98491 1.30496 1.10878 1.11684 1.19110 1.09151 0.78728 0.76649 0.78398 1.93641 1.64324 1.64753 1.70605 1.93632 1.80261 1.47884 1.71737 1.30818 1.18534 1.15185 1.07256 1.77323 1.03776 1.16407 1.16312 0.92323 0.93743 0.92524 0.81514 0.82204 0.75845 0.76851 0.90352 0.90536 0.88263 0.88961 0.84388 0.84169 0.83770 0.84133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.18 13.28 55.43 0.74 -24.44 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.91 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.53 -14.59 9.24 -34.44 -0.32 -14.90 16 8 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 9 C 0.26 6.51 6.26 -5.20 -0.03 6.48 16 10 N -0.32 -7.36 3.67 -62.56 -0.23 -7.59 16 11 C 0.05 1.01 11.44 -17.24 -0.20 0.81 16 12 C -0.29 -5.59 9.61 -39.83 -0.38 -5.97 16 13 C 0.27 5.37 8.11 -154.37 -1.25 4.12 16 14 N -0.64 -9.38 5.46 -15.51 -0.08 -9.47 16 15 C 0.71 9.45 8.53 -86.92 -0.74 8.71 16 16 O -0.57 -9.44 13.47 5.28 0.07 -9.37 16 17 N -0.75 -5.82 5.40 -65.22 -0.35 -6.17 16 18 C 0.16 0.87 5.08 -4.04 -0.02 0.85 16 19 C -0.10 -0.27 2.63 -89.08 -0.23 -0.50 16 20 H 0.11 0.17 8.14 -51.93 -0.42 -0.26 16 21 C -0.11 -0.16 5.75 -25.66 -0.15 -0.30 16 22 C -0.59 -1.02 7.26 37.77 0.27 -0.74 16 23 S 2.39 11.20 6.10 -107.50 -0.66 10.55 16 24 O -0.94 -8.10 18.15 -57.73 -1.05 -9.15 16 25 O -0.94 -8.32 18.15 -57.73 -1.05 -9.37 16 26 C -0.59 -1.69 6.38 38.24 0.24 -1.44 16 27 N -0.31 -6.95 12.42 31.44 0.39 -6.56 16 28 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.04 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 31 H 0.17 2.68 8.06 -52.49 -0.42 2.25 16 32 H 0.16 3.04 5.91 -52.49 -0.31 2.73 16 33 H 0.41 4.70 8.84 -40.82 -0.36 4.34 16 34 H 0.40 1.98 8.22 -40.82 -0.34 1.65 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.46 8.10 -51.93 -0.42 0.04 16 37 H 0.10 0.07 8.14 -51.93 -0.42 -0.36 16 38 H 0.09 0.07 8.10 -51.93 -0.42 -0.35 16 39 H 0.14 0.11 8.14 -51.93 -0.42 -0.31 16 40 H 0.14 0.11 8.14 -51.93 -0.42 -0.31 16 41 H 0.14 0.33 8.07 -51.93 -0.42 -0.09 16 42 H 0.14 0.28 8.01 -51.93 -0.42 -0.13 16 LS Contribution 369.04 15.07 5.56 5.56 Total: -1.00 -39.70 369.04 -10.19 -49.89 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -5.61 Total: 1.22 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -2.91 Total: -1.31 kcal Atomic # 7 Polarization: -54.69 SS G_CDS: 0.46 Total: -54.23 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -2.02 Total: -27.89 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 11.20 SS G_CDS: -0.66 Total: 10.55 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -39.70 -10.19 -49.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001425302743.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.575 kcal (2) G-P(sol) polarization free energy of solvation -39.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds