Wall clock time and date at job start Wed Apr 1 2020 01:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38036 * 126.29211 * 2 1 4 4 C 1.47430 * 126.41610 * 0.02562 * 3 2 1 5 5 O 1.21606 * 119.99820 * 359.97438 * 4 3 2 6 6 N 1.34777 * 120.00227 * 179.97438 * 4 3 2 7 7 C 1.47025 * 125.64681 * 0.02562 * 6 4 3 8 8 C 1.54323 * 107.26976 * 178.90213 * 7 6 4 9 9 C 1.55160 * 102.94374 * 337.80853 * 8 7 6 10 10 H 1.08997 * 110.99890 * 277.38611 * 9 8 7 11 11 S 1.81399 * 111.00243 * 153.57673 * 9 8 7 12 12 N 1.65603 * 104.44520 * 185.00144 * 11 9 8 13 13 O 1.42102 * 110.54411 * 296.61906 * 11 9 8 14 14 O 1.42098 * 110.54571 * 73.37783 * 11 9 8 15 15 C 1.47419 * 125.64923 * 179.71093 * 6 4 3 16 16 C 1.41294 * 107.17120 * 179.97438 * 3 2 1 17 17 N 1.30440 * 108.02337 * 0.02562 * 16 3 2 18 18 N 1.34264 * 126.29134 * 179.97438 * 2 1 3 19 19 C 1.46498 * 125.75124 * 359.75430 * 18 2 1 20 20 C 1.50704 * 109.47330 * 90.00344 * 19 18 2 21 21 H 1.07999 * 119.99597 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00001 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00082 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99888 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46992 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47252 * 119.99691 * 24 22 20 27 27 H 1.48494 * 109.47094 * 239.99904 * 24 22 20 28 28 H 1.08998 * 109.46868 * 269.99473 * 1 2 3 29 29 H 1.08994 * 109.47041 * 29.99372 * 1 2 3 30 30 H 1.09000 * 109.47478 * 149.99697 * 1 2 3 31 31 H 1.08995 * 109.88562 * 298.32213 * 7 6 4 32 32 H 1.08996 * 109.87977 * 59.33199 * 7 6 4 33 33 H 1.09008 * 110.72024 * 96.17102 * 8 7 6 34 34 H 1.08999 * 110.72168 * 219.44681 * 8 7 6 35 35 H 0.97007 * 119.99928 * 150.00124 * 12 11 9 36 36 H 0.96998 * 120.00161 * 329.99251 * 12 11 9 37 37 H 1.09001 * 110.37218 * 323.00742 * 15 6 4 38 38 H 1.09007 * 110.36449 * 85.33076 * 15 6 4 39 39 H 1.08003 * 125.98909 * 179.97438 * 16 3 2 40 40 H 1.09001 * 109.47019 * 210.00203 * 19 18 2 41 41 H 1.09002 * 109.47134 * 329.99827 * 19 18 2 42 42 H 0.96998 * 119.99721 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1126 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.6995 2.7877 0.0006 6 7 2.7999 3.5107 0.0010 7 6 4.2590 3.3300 0.0005 8 6 4.8947 4.7359 -0.0269 9 6 3.7606 5.6188 -0.6114 10 1 3.7427 5.5618 -1.6997 11 16 3.9236 7.3381 -0.0565 12 7 2.5752 8.0937 -0.6509 13 8 3.7791 7.4225 1.3547 14 8 5.0050 7.9765 -0.7216 15 6 2.5024 4.9545 -0.0045 16 6 3.6590 0.6498 0.0006 17 7 3.6340 -0.6544 0.0004 18 7 2.3017 -1.0822 0.0005 19 6 1.8500 -2.4758 0.0062 20 6 1.6903 -2.9580 -1.4127 21 1 1.9035 -2.2927 -2.2362 22 6 1.2710 -4.2481 -1.6592 23 7 1.0109 -5.0581 -0.6563 24 14 1.0724 -4.8455 -3.4180 25 1 1.4248 -3.7494 -4.3559 26 1 1.9702 -6.0051 -3.6513 27 1 -0.3364 -5.2567 -3.6449 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3633 0.8900 -0.5137 30 1 -0.3634 -0.8899 -0.5139 31 1 4.5674 2.8012 0.9023 32 1 4.5624 2.7662 -0.8816 33 1 5.1561 5.0607 0.9803 34 1 5.7693 4.7511 -0.6774 35 1 2.1923 8.8476 -0.1753 36 1 2.1684 7.7826 -1.4746 37 1 1.6287 5.1595 -0.6233 38 1 2.3405 5.3123 1.0124 39 1 4.5449 1.2675 0.0004 40 1 2.5864 -3.0943 0.5194 41 1 0.8932 -2.5455 0.5236 42 1 0.7163 -5.9658 -0.8298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001457703649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:36 Heat of formation + Delta-G solvation = -26.843841 kcal Electronic energy + Delta-G solvation = -27629.180668 eV Core-core repulsion = 23545.289233 eV Total energy + Delta-G solvation = -4083.891435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.98696 -39.62349 -37.53563 -37.27635 -36.38219 -34.00125 -33.65424 -32.52868 -31.86197 -31.13198 -29.72371 -27.41940 -26.76433 -24.49106 -23.54663 -22.37305 -21.24381 -20.07124 -19.82041 -18.59454 -18.17375 -17.78143 -17.14963 -16.97704 -16.75134 -15.77150 -15.59657 -15.42674 -15.05105 -14.64075 -14.56128 -14.16481 -14.11435 -13.61863 -13.07948 -12.93944 -12.64634 -12.60054 -12.55161 -12.49694 -12.41044 -12.31897 -12.17991 -12.10618 -11.71775 -11.57403 -11.51038 -11.17455 -11.13429 -10.95381 -10.75756 -10.41714 -10.25441 -9.96303 -9.54308 -8.83128 -8.75876 -8.61790 -7.99932 -6.38008 -4.46157 -0.25589 2.07108 2.34289 2.72320 2.86966 3.13620 3.16962 3.21752 3.24902 3.35370 3.44853 3.69329 3.80229 4.20212 4.20867 4.36619 4.70222 4.73716 4.92097 4.98529 5.07567 5.11742 5.24516 5.31841 5.33182 5.45620 5.51957 5.54782 5.69035 5.78837 6.04125 6.14288 6.45314 6.51258 6.60044 6.73069 6.85249 7.09595 7.49708 7.51337 7.71897 7.73052 8.29154 8.41728 8.59848 9.21138 10.70216 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.026640 B = 0.002266 C = 0.002245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.808427 B =12353.860894 C =12471.019123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.169 3.831 3 C -0.331 4.331 4 C 0.622 3.378 5 O -0.550 6.550 6 N -0.617 5.617 7 C 0.102 3.898 8 C -0.111 4.111 9 C -0.613 4.613 10 H 0.152 0.848 11 S 2.629 3.371 12 N -1.249 6.249 13 O -0.954 6.954 14 O -0.956 6.956 15 C 0.137 3.863 16 C 0.044 3.956 17 N -0.295 5.295 18 N -0.313 5.313 19 C 0.250 3.750 20 C -0.541 4.541 21 H 0.066 0.934 22 C 0.067 3.933 23 N -0.889 5.889 24 Si 0.908 3.092 25 H -0.271 1.271 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.422 0.578 36 H 0.415 0.585 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.185 0.815 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.007 22.620 0.417 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.031 3.969 3 C -0.346 4.346 4 C 0.415 3.585 5 O -0.429 6.429 6 N -0.353 5.353 7 C -0.021 4.021 8 C -0.150 4.150 9 C -0.723 4.723 10 H 0.169 0.831 11 S 2.718 3.282 12 N -0.922 5.922 13 O -0.944 6.944 14 O -0.945 6.945 15 C 0.013 3.987 16 C -0.142 4.142 17 N -0.114 5.114 18 N -0.089 5.089 19 C 0.133 3.867 20 C -0.579 4.579 21 H 0.084 0.916 22 C -0.137 4.137 23 N -0.526 5.526 24 Si 0.735 3.265 25 H -0.195 1.195 26 H -0.205 1.205 27 H -0.205 1.205 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.110 0.890 34 H 0.123 0.877 35 H 0.252 0.748 36 H 0.242 0.758 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.202 0.798 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.804 21.541 1.071 22.096 hybrid contribution -1.048 -0.090 -1.533 1.859 sum 3.756 21.451 -0.463 21.782 Atomic orbital electron populations 1.20624 0.86763 1.04884 1.03375 1.21461 0.94978 0.86429 0.94044 1.19523 0.93291 0.91958 1.29861 1.17000 0.83935 0.83214 0.74326 1.90710 1.16052 1.84015 1.52127 1.48051 1.06270 1.04826 1.76184 1.22298 0.80544 0.96174 1.03131 1.22555 0.96062 0.94120 1.02276 1.31827 1.05273 1.22699 1.12478 0.83053 1.04427 0.73558 0.75811 0.74368 1.53148 1.51521 1.48515 1.39020 1.93627 1.85512 1.85572 1.29673 1.93641 1.53243 1.71275 1.76369 1.21726 0.94060 0.81748 1.01199 1.24358 0.96857 0.92690 1.00337 1.77159 0.98635 1.12323 1.23325 1.49416 1.02521 1.08331 1.48651 1.19879 0.96470 0.70848 0.99504 1.21281 1.47473 0.98171 0.90993 0.91607 1.24932 0.94425 0.96004 0.98315 1.69922 1.44447 1.07243 1.30983 0.86265 0.77996 0.78863 0.83369 1.19538 1.20537 1.20527 0.90398 0.88657 0.89788 0.89764 0.89877 0.89034 0.87699 0.74823 0.75848 0.88842 0.89780 0.79823 0.92431 0.92518 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.73 9.34 36.00 0.34 -1.40 16 2 C 0.17 3.36 7.01 -81.60 -0.57 2.79 16 3 C -0.33 -5.93 6.09 -105.07 -0.64 -6.57 16 4 C 0.62 10.09 7.85 -12.52 -0.10 10.00 16 5 O -0.55 -10.11 15.10 5.27 0.08 -10.03 16 6 N -0.62 -7.38 3.33 -171.93 -0.57 -7.95 16 7 C 0.10 0.90 4.99 -3.06 -0.02 0.88 16 8 C -0.11 -0.68 6.44 -24.90 -0.16 -0.84 16 9 C -0.61 -3.65 3.76 -24.70 -0.09 -3.74 16 10 H 0.15 0.57 8.14 -51.93 -0.42 0.15 16 11 S 2.63 17.84 5.50 -107.50 -0.59 17.25 16 12 N -1.25 -4.87 9.35 60.35 0.56 -4.30 16 13 O -0.95 -9.79 17.63 -57.54 -1.01 -10.80 16 14 O -0.96 -9.75 18.10 -57.54 -1.04 -10.79 16 15 C 0.14 1.22 6.38 -2.65 -0.02 1.20 16 16 C 0.04 0.75 10.44 -16.98 -0.18 0.57 16 17 N -0.29 -6.18 12.50 30.86 0.39 -5.80 16 18 N -0.31 -6.93 3.56 -57.77 -0.21 -7.14 16 19 C 0.25 6.11 5.78 -5.19 -0.03 6.08 16 20 C -0.54 -14.31 9.39 -34.44 -0.32 -14.63 16 21 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 22 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 23 N -0.89 -24.23 13.29 55.43 0.74 -23.50 16 24 Si 0.91 20.48 29.54 -169.99 -5.02 15.46 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 28 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.09 1.64 6.50 -51.93 -0.34 1.30 16 30 H 0.08 1.53 7.71 -51.93 -0.40 1.13 16 31 H 0.08 0.69 7.00 -51.93 -0.36 0.33 16 32 H 0.08 0.69 6.82 -51.93 -0.35 0.33 16 33 H 0.09 0.49 8.03 -51.92 -0.42 0.08 16 34 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.42 1.27 8.96 -34.47 -0.31 0.96 16 36 H 0.41 0.65 8.96 -34.47 -0.31 0.34 16 37 H 0.09 0.76 8.04 -51.93 -0.42 0.35 16 38 H 0.08 0.75 7.62 -51.92 -0.40 0.35 16 39 H 0.19 2.25 4.47 -52.48 -0.23 2.01 16 40 H 0.06 1.50 8.14 -51.93 -0.42 1.07 16 41 H 0.06 1.38 7.63 -51.93 -0.40 0.98 16 42 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 362.57 15.07 5.46 5.46 Total: -1.00 -37.04 362.57 -8.27 -45.32 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -5.17 Total: 0.80 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -1.89 Total: -3.99 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.91 Total: -48.69 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -1.98 Total: -31.62 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: 17.84 SS G_CDS: -0.59 Total: 17.25 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.04 -8.27 -45.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457703649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.472 kcal (2) G-P(sol) polarization free energy of solvation -37.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds