Wall clock time and date at job start Wed Apr 1 2020 01:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38047 * 126.29162 * 2 1 4 4 C 1.47432 * 126.41105 * 359.97438 * 3 2 1 5 5 O 1.21606 * 120.00000 * 0.02562 * 4 3 2 6 6 N 1.34774 * 119.99893 * 180.02562 * 4 3 2 7 7 C 1.47018 * 125.64818 * 0.02593 * 6 4 3 8 8 C 1.54324 * 107.27481 * 181.02227 * 7 6 4 9 9 C 1.55161 * 102.94111 * 22.19194 * 8 7 6 10 10 H 1.09001 * 111.00482 * 82.56919 * 9 8 7 11 11 S 1.81398 * 111.00736 * 206.39002 * 9 8 7 12 12 N 1.65596 * 104.45247 * 179.97438 * 11 9 8 13 13 O 1.42100 * 110.54126 * 291.62585 * 11 9 8 14 14 O 1.42101 * 110.54342 * 68.37001 * 11 9 8 15 15 C 1.47423 * 125.64870 * 179.71295 * 6 4 3 16 16 C 1.41288 * 107.17218 * 179.97438 * 3 2 1 17 17 N 1.30448 * 108.02410 * 0.24299 * 16 3 2 18 18 N 1.34263 * 126.29396 * 179.97438 * 2 1 3 19 19 C 1.46502 * 125.75119 * 0.02562 * 18 2 1 20 20 C 1.50705 * 109.46822 * 90.00359 * 19 18 2 21 21 H 1.07995 * 119.99899 * 0.02562 * 20 19 18 22 22 C 1.37875 * 119.99730 * 179.97438 * 20 19 18 23 23 N 1.31512 * 119.99854 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99849 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47390 * 59.99735 * 24 22 20 26 26 H 1.48497 * 109.47308 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46746 * 299.99980 * 24 22 20 28 28 H 1.09003 * 109.47124 * 90.00446 * 1 2 3 29 29 H 1.09005 * 109.46936 * 209.99580 * 1 2 3 30 30 H 1.08990 * 109.47406 * 329.99936 * 1 2 3 31 31 H 1.09000 * 109.88571 * 300.43775 * 7 6 4 32 32 H 1.09006 * 109.88601 * 61.60425 * 7 6 4 33 33 H 1.09002 * 110.72581 * 140.55277 * 8 7 6 34 34 H 1.08995 * 110.71821 * 263.65326 * 8 7 6 35 35 H 0.97002 * 119.99485 * 359.97438 * 12 11 9 36 36 H 0.96995 * 119.99791 * 179.97438 * 12 11 9 37 37 H 1.09001 * 110.37111 * 274.74876 * 15 6 4 38 38 H 1.08999 * 110.36574 * 37.07585 * 15 6 4 39 39 H 1.08002 * 125.98501 * 179.97438 * 16 3 2 40 40 H 1.09002 * 109.46874 * 210.00159 * 19 18 2 41 41 H 1.08996 * 109.47084 * 330.00141 * 19 18 2 42 42 H 0.97006 * 119.99514 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6995 2.7877 -0.0006 6 7 2.7998 3.5107 -0.0010 7 6 4.2588 3.3302 -0.0016 8 6 4.8946 4.7361 0.0244 9 6 3.7609 5.6194 0.6092 10 1 3.7433 5.5626 1.6975 11 16 3.9239 7.3386 0.0538 12 7 2.6503 8.1244 0.7626 13 8 5.0737 7.9421 0.6308 14 8 3.6653 7.4390 -1.3399 15 6 2.5022 4.9546 -0.0075 16 6 3.6591 0.6499 0.0006 17 7 3.6341 -0.6543 -0.0043 18 7 2.3018 -1.0821 0.0005 19 6 1.8501 -2.4758 0.0006 20 6 1.6959 -2.9539 -1.4203 21 1 1.9130 -2.2866 -2.2411 22 6 1.2787 -4.2437 -1.6721 23 7 1.0158 -5.0567 -0.6725 24 14 1.0882 -4.8365 -3.4333 25 1 2.3946 -4.7391 -4.1325 26 1 0.6303 -6.2491 -3.4333 27 1 0.0875 -3.9923 -4.1342 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 4.5634 2.7694 0.8821 32 1 4.5666 2.8007 -0.9034 33 1 5.7697 4.7518 0.6740 34 1 5.1580 5.0588 -0.9829 35 1 2.0326 7.6350 1.3282 36 1 2.5220 9.0740 0.6122 37 1 2.3464 5.3053 -1.0278 38 1 1.6249 5.1639 0.6045 39 1 4.5449 1.2678 0.0004 40 1 2.5846 -3.0957 0.5148 41 1 0.8913 -2.5470 0.5140 42 1 0.7218 -5.9640 -0.8497 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001457703710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:43 Heat of formation + Delta-G solvation = -25.484548 kcal Electronic energy + Delta-G solvation = -27622.566670 eV Core-core repulsion = 23538.734179 eV Total energy + Delta-G solvation = -4083.832492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.99249 -39.63053 -37.51183 -37.27880 -36.36148 -33.99648 -33.65023 -32.53478 -31.87310 -31.13587 -29.72914 -27.42389 -26.76499 -24.50661 -23.55139 -22.39945 -21.24857 -20.08020 -19.80649 -18.61123 -18.27590 -17.74613 -17.11408 -16.86021 -16.60639 -16.07597 -15.58060 -15.33721 -15.12426 -14.68785 -14.50499 -14.19114 -14.12274 -13.59945 -13.10332 -12.94708 -12.64303 -12.57787 -12.53433 -12.48887 -12.38924 -12.33395 -12.18152 -12.11249 -11.71731 -11.57063 -11.52600 -11.17632 -11.02866 -10.89571 -10.87772 -10.40619 -10.26397 -9.99707 -9.55216 -8.84253 -8.73832 -8.62750 -8.00098 -6.36852 -4.44975 -0.26740 2.06629 2.34405 2.71647 2.85611 3.12318 3.17998 3.22147 3.23948 3.34211 3.41189 3.68402 3.80059 4.20208 4.21616 4.39040 4.68512 4.72032 4.90840 4.99056 5.05070 5.11118 5.22929 5.30968 5.32080 5.44903 5.50384 5.55194 5.66369 5.78143 6.05053 6.13869 6.40902 6.47169 6.58361 6.73991 6.85918 7.09078 7.48501 7.51594 7.72055 7.73660 8.28697 8.40970 8.60083 9.22138 10.71326 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.027329 B = 0.002259 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.300118 B =12389.257211 C =12531.193161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.168 3.832 3 C -0.331 4.331 4 C 0.622 3.378 5 O -0.550 6.550 6 N -0.617 5.617 7 C 0.102 3.898 8 C -0.110 4.110 9 C -0.610 4.610 10 H 0.154 0.846 11 S 2.627 3.373 12 N -1.250 6.250 13 O -0.959 6.959 14 O -0.954 6.954 15 C 0.133 3.867 16 C 0.044 3.956 17 N -0.294 5.294 18 N -0.313 5.313 19 C 0.251 3.749 20 C -0.542 4.542 21 H 0.065 0.935 22 C 0.068 3.932 23 N -0.889 5.889 24 Si 0.909 3.091 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.273 1.273 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.414 0.586 36 H 0.421 0.579 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.185 0.815 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.161 22.588 5.406 23.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.031 3.969 3 C -0.347 4.347 4 C 0.415 3.585 5 O -0.429 6.429 6 N -0.353 5.353 7 C -0.022 4.022 8 C -0.149 4.149 9 C -0.719 4.719 10 H 0.171 0.829 11 S 2.717 3.283 12 N -0.924 5.924 13 O -0.948 6.948 14 O -0.943 6.943 15 C 0.009 3.991 16 C -0.142 4.142 17 N -0.114 5.114 18 N -0.089 5.089 19 C 0.134 3.866 20 C -0.580 4.580 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.527 5.527 24 Si 0.735 3.265 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.198 1.198 28 H 0.103 0.897 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.124 0.876 34 H 0.109 0.891 35 H 0.241 0.759 36 H 0.251 0.749 37 H 0.106 0.894 38 H 0.111 0.889 39 H 0.202 0.798 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.922 21.484 4.796 22.557 hybrid contribution -1.003 -0.040 -0.290 1.045 sum 3.919 21.444 4.507 22.260 Atomic orbital electron populations 1.20582 0.86719 1.03811 1.04036 1.21466 0.94972 0.86463 0.94041 1.19514 0.93274 0.91931 1.29940 1.17001 0.83931 0.83210 0.74314 1.90712 1.16039 1.84010 1.52118 1.48040 1.06282 1.04771 1.76225 1.22307 0.80520 0.96159 1.03169 1.22543 0.96051 0.94082 1.02264 1.31817 1.05403 1.22229 1.12476 0.82854 1.04467 0.73593 0.75710 0.74535 1.53079 1.48437 1.22257 1.68672 1.93628 1.49321 1.73049 1.78809 1.93638 1.84343 1.84935 1.31387 1.21885 0.93988 0.81884 1.01368 1.24358 0.96850 0.92697 1.00319 1.77169 0.98604 1.12315 1.23331 1.49420 1.02533 1.08345 1.48614 1.19870 0.96431 0.70816 0.99491 1.21199 1.47672 0.98173 0.90936 0.91708 1.24920 0.94388 0.95962 0.98341 1.69903 1.44342 1.07225 1.31207 0.86371 0.78905 0.77768 0.83430 1.19883 1.20846 1.19831 0.89716 0.90759 0.88859 0.89839 0.89700 0.87620 0.89135 0.75912 0.74931 0.89407 0.88857 0.79817 0.92471 0.92525 0.92019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.64 9.57 36.01 0.34 -1.30 16 2 C 0.17 3.34 7.01 -81.60 -0.57 2.77 16 3 C -0.33 -5.90 6.09 -105.06 -0.64 -6.54 16 4 C 0.62 10.02 7.85 -12.52 -0.10 9.92 16 5 O -0.55 -10.03 15.09 5.27 0.08 -9.95 16 6 N -0.62 -7.30 3.32 -171.64 -0.57 -7.87 16 7 C 0.10 0.88 4.98 -3.07 -0.02 0.87 16 8 C -0.11 -0.67 6.43 -24.89 -0.16 -0.83 16 9 C -0.61 -3.52 3.71 -24.46 -0.09 -3.61 16 10 H 0.15 0.52 8.14 -51.93 -0.42 0.09 16 11 S 2.63 18.01 5.56 -107.50 -0.60 17.41 16 12 N -1.25 -4.92 9.43 60.35 0.57 -4.35 16 13 O -0.96 -9.72 18.10 -57.54 -1.04 -10.76 16 14 O -0.95 -10.13 17.45 -57.54 -1.00 -11.14 16 15 C 0.13 1.17 6.39 -2.41 -0.02 1.15 16 16 C 0.04 0.75 10.45 -16.98 -0.18 0.57 16 17 N -0.29 -6.17 12.50 30.86 0.39 -5.78 16 18 N -0.31 -6.92 3.56 -57.77 -0.21 -7.12 16 19 C 0.25 6.14 5.97 -5.19 -0.03 6.11 16 20 C -0.54 -14.40 9.39 -34.44 -0.32 -14.72 16 21 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 22 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 23 N -0.89 -24.31 13.29 55.43 0.74 -23.57 16 24 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 28 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.07 1.27 7.05 -51.93 -0.37 0.90 16 30 H 0.09 1.55 6.50 -51.93 -0.34 1.21 16 31 H 0.08 0.65 6.83 -51.93 -0.35 0.29 16 32 H 0.08 0.72 7.00 -51.93 -0.36 0.36 16 33 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.49 8.04 -51.93 -0.42 0.07 16 35 H 0.41 0.65 8.83 -34.46 -0.30 0.35 16 36 H 0.42 1.27 8.96 -34.46 -0.31 0.96 16 37 H 0.09 0.80 7.49 -51.93 -0.39 0.41 16 38 H 0.09 0.72 8.03 -51.93 -0.42 0.30 16 39 H 0.19 2.23 4.47 -52.49 -0.23 1.99 16 40 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.06 1.37 7.01 -51.93 -0.36 1.01 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 361.34 15.07 5.45 5.45 Total: -1.00 -37.17 361.34 -8.19 -45.36 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.09 Total: 0.63 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -1.88 Total: -3.91 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.91 Total: -48.69 kcal Atomic # 8 Polarization: -29.88 SS G_CDS: -1.97 Total: -31.85 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Atomic # 16 Polarization: 18.01 SS G_CDS: -0.60 Total: 17.41 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.17 -8.19 -45.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001457703710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.876 kcal (2) G-P(sol) polarization free energy of solvation -37.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds