Wall clock time and date at job start Wed Apr 1 2020 00:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00338 * 2 1 4 4 H 1.48496 * 109.47189 * 239.99910 * 3 2 1 5 5 H 1.48497 * 109.46737 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47005 * 119.99820 * 3 2 1 7 7 C 1.38810 * 119.99761 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00052 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00263 * 359.72651 * 7 2 1 10 10 C 1.46497 * 120.00285 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.47322 * 324.99964 * 10 9 7 12 12 C 1.52999 * 109.46960 * 85.00229 * 10 9 7 13 13 O 1.42900 * 109.47084 * 65.00558 * 12 10 9 14 14 C 1.53007 * 109.47379 * 205.00371 * 10 9 7 15 15 N 1.46498 * 109.47197 * 54.99504 * 14 10 9 16 16 C 1.34774 * 120.00002 * 180.02562 * 15 14 10 17 17 O 1.21280 * 120.00125 * 355.14331 * 16 15 14 18 18 C 1.50706 * 119.99908 * 175.15395 * 16 15 14 19 19 H 1.08999 * 109.52322 * 322.19205 * 18 16 15 20 20 O 1.43072 * 109.51997 * 202.06684 * 18 16 15 21 21 C 1.43202 * 113.51630 * 297.97624 * 20 18 16 22 22 C 1.53141 * 109.19008 * 302.09488 * 21 20 18 23 23 O 1.43072 * 109.14776 * 55.31565 * 22 21 20 24 24 C 1.43077 * 113.59260 * 302.04292 * 23 22 21 25 25 H 1.08999 * 109.58111 * 298.02453 * 24 23 22 26 26 C 1.53006 * 109.52475 * 177.85737 * 24 23 22 27 27 F 1.39908 * 109.46931 * 307.21334 * 26 24 23 28 28 F 1.39898 * 109.46807 * 67.21120 * 26 24 23 29 29 F 1.39893 * 109.47214 * 187.21383 * 26 24 23 30 30 H 0.96996 * 119.99366 * 0.02562 * 1 2 3 31 31 H 0.97005 * 119.99796 * 359.97438 * 9 7 2 32 32 H 1.09005 * 109.46966 * 184.99823 * 12 10 9 33 33 H 1.08990 * 109.47401 * 304.99745 * 12 10 9 34 34 H 0.96697 * 113.99784 * 180.02562 * 13 12 10 35 35 H 1.08995 * 109.47025 * 175.00360 * 14 10 9 36 36 H 1.09001 * 109.46647 * 295.00366 * 14 10 9 37 37 H 0.97002 * 120.00049 * 0.02562 * 15 14 10 38 38 H 1.09003 * 109.50456 * 182.17808 * 21 20 18 39 39 H 1.09002 * 109.50680 * 62.01371 * 21 20 18 40 40 H 1.09003 * 109.52352 * 295.41457 * 22 21 20 41 41 H 1.08998 * 109.52274 * 175.21320 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2124 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0067 10 6 2.0580 -3.6568 0.0067 11 1 2.9660 -3.5522 -0.5871 12 6 2.4283 -4.0318 1.4431 13 8 1.2374 -4.2829 2.1919 14 6 1.1780 -4.7537 -0.5962 15 7 0.7254 -4.3405 -1.9268 16 6 -0.0677 -5.1542 -2.6516 17 8 -0.3348 -6.2637 -2.2413 18 6 -0.6224 -4.6853 -3.9721 19 1 -0.8837 -3.6293 -3.9031 20 8 -1.7893 -5.4464 -4.2978 21 6 -1.5322 -6.8460 -4.4580 22 6 -0.4806 -7.0424 -5.5538 23 8 0.6854 -6.2803 -5.2272 24 6 0.4293 -4.8817 -5.0678 25 1 0.0591 -4.4689 -6.0062 26 6 1.7223 -4.1672 -4.6696 27 9 2.2814 -4.8016 -3.5549 28 9 2.6276 -4.2132 -5.7351 29 9 1.4402 -2.8337 -4.3545 30 1 -0.4849 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0111 32 1 3.0487 -4.9281 1.4361 33 1 2.9800 -3.2116 1.9021 34 1 1.3966 -4.5265 3.1140 35 1 1.7525 -5.6764 -0.6780 36 1 0.3133 -4.9199 0.0463 37 1 0.9965 -3.4813 -2.2861 38 1 -2.4534 -7.3551 -4.7417 39 1 -1.1616 -7.2578 -3.5193 40 1 -0.8818 -6.7033 -6.5088 41 1 -0.2184 -8.0982 -5.6219 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486008561.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:53 Heat of formation + Delta-G solvation = -306.104397 kcal Electronic energy + Delta-G solvation = -33333.740981 eV Core-core repulsion = 28220.837537 eV Total energy + Delta-G solvation = -5112.903444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.128 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -51.34497 -48.84037 -48.77115 -42.07116 -39.90999 -38.56822 -37.35506 -36.39022 -35.31293 -33.93909 -32.92647 -30.23087 -29.75177 -28.18109 -26.33875 -25.58998 -24.57995 -23.45754 -21.80065 -21.28367 -19.84833 -19.73122 -19.51544 -19.29716 -18.42716 -18.16137 -17.91294 -17.74059 -17.25299 -16.71980 -16.49403 -16.16998 -15.94406 -15.64029 -15.56894 -15.43166 -15.28253 -15.16069 -14.98523 -14.89219 -14.87166 -14.75412 -14.55620 -14.40119 -13.70217 -13.52826 -13.40474 -13.03594 -12.98070 -12.74338 -12.64566 -12.47489 -12.27394 -11.93369 -11.87399 -11.72235 -11.05654 -10.95625 -10.72958 -10.11363 -9.96643 -9.00213 -7.88841 -5.18210 1.16256 1.30268 1.51054 1.52389 1.58398 1.90676 2.15212 2.31488 2.58666 2.60168 2.71567 3.14152 3.30491 3.39194 3.46439 3.60137 3.81418 3.85658 3.88064 3.91174 4.00534 4.21322 4.36098 4.41113 4.53938 4.59270 4.69442 4.80324 4.94623 5.00558 5.19529 5.43257 5.52349 5.55462 5.62434 6.29723 6.37619 7.01673 7.06585 7.38180 8.08760 8.35317 9.33675 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.012710 B = 0.004438 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.500773 B = 6307.834789 C = 7199.191901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.066 4.066 3 Si 0.966 3.034 4 H -0.277 1.277 5 H -0.300 1.300 6 H -0.282 1.282 7 C -0.240 4.240 8 H 0.078 0.922 9 N -0.721 5.721 10 C 0.160 3.840 11 H 0.073 0.927 12 C 0.067 3.933 13 O -0.582 6.582 14 C 0.132 3.868 15 N -0.705 5.705 16 C 0.488 3.512 17 O -0.554 6.554 18 C 0.044 3.956 19 H 0.156 0.844 20 O -0.348 6.348 21 C -0.018 4.018 22 C 0.031 3.969 23 O -0.372 6.372 24 C 0.032 3.968 25 H 0.159 0.841 26 C 0.456 3.544 27 F -0.174 7.174 28 F -0.170 7.170 29 F -0.169 7.169 30 H 0.249 0.751 31 H 0.373 0.627 32 H 0.064 0.936 33 H 0.037 0.963 34 H 0.386 0.614 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.405 0.595 38 H 0.136 0.864 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.535 -13.931 -12.228 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.259 4.259 3 Si 0.796 3.204 4 H -0.203 1.203 5 H -0.226 1.226 6 H -0.209 1.209 7 C -0.371 4.371 8 H 0.096 0.904 9 N -0.361 5.361 10 C 0.051 3.949 11 H 0.090 0.910 12 C -0.014 4.014 13 O -0.389 6.389 14 C 0.008 3.992 15 N -0.358 5.358 16 C 0.274 3.726 17 O -0.433 6.433 18 C -0.018 4.018 19 H 0.174 0.826 20 O -0.265 6.265 21 C -0.094 4.094 22 C -0.045 4.045 23 O -0.291 6.291 24 C -0.029 4.029 25 H 0.176 0.824 26 C 0.401 3.599 27 F -0.155 7.155 28 F -0.151 7.151 29 F -0.150 7.150 30 H 0.058 0.942 31 H 0.205 0.795 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.234 0.766 35 H 0.094 0.906 36 H 0.074 0.926 37 H 0.243 0.757 38 H 0.154 0.846 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 1.233 -14.434 -12.501 19.135 hybrid contribution 0.593 1.505 0.892 1.847 sum 1.826 -12.929 -11.610 17.472 Atomic orbital electron populations 1.69824 1.06531 1.25895 1.59177 1.25438 0.96137 1.00643 1.03700 0.85326 0.77209 0.79786 0.78061 1.20265 1.22648 1.20869 1.19540 0.91384 0.84882 1.41325 0.90388 1.42426 1.05323 1.00081 1.88251 1.20819 0.94956 0.85502 0.93621 0.90952 1.22833 0.86641 0.98561 0.93389 1.86515 1.32809 1.92173 1.27400 1.21367 0.98522 0.97184 0.82115 1.46281 1.49550 1.21612 1.18345 1.21411 0.78660 0.85312 0.87253 1.90495 1.60008 1.20508 1.72336 1.22757 0.88691 1.00333 0.90060 0.82645 1.88263 1.27874 1.20608 1.89797 1.24123 1.02266 0.81512 1.01488 1.23654 0.84655 0.98140 0.98009 1.88126 1.34372 1.14969 1.91658 1.23759 0.89977 0.86894 1.02242 0.82415 1.20255 0.86512 0.77638 0.75452 1.93277 1.87176 1.81748 1.53294 1.93213 1.69842 1.96187 1.55906 1.93267 1.93500 1.35547 1.92697 0.94183 0.79498 0.91768 0.94436 0.76636 0.90615 0.92585 0.75699 0.84608 0.89423 0.88958 0.84553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.48 13.06 21.65 0.28 -57.20 16 2 C -0.07 -3.66 5.50 84.86 0.47 -3.20 16 3 Si 0.97 44.80 29.55 68.60 2.03 46.83 16 4 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 5 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.24 -12.57 9.93 84.03 0.83 -11.74 16 8 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 9 N -0.72 -34.62 4.51 -322.94 -1.46 -36.08 16 10 C 0.16 6.13 2.84 44.99 0.13 6.25 16 11 H 0.07 2.67 8.08 -2.39 -0.02 2.65 16 12 C 0.07 2.23 6.86 71.98 0.49 2.73 16 13 O -0.58 -20.29 12.64 -148.98 -1.88 -22.17 16 14 C 0.13 4.82 5.12 86.38 0.44 5.26 16 15 N -0.70 -25.00 3.36 -463.06 -1.56 -26.56 16 16 C 0.49 16.56 5.50 87.66 0.48 17.04 16 17 O -0.55 -20.96 13.50 14.96 0.20 -20.76 16 18 C 0.04 1.18 3.06 29.90 0.09 1.27 16 19 H 0.16 3.87 7.81 -2.39 -0.02 3.85 16 20 O -0.35 -9.03 10.62 -123.39 -1.31 -10.34 16 21 C -0.02 -0.39 6.61 72.03 0.48 0.09 16 22 C 0.03 0.50 7.05 72.03 0.51 1.00 16 23 O -0.37 -8.59 10.06 -136.08 -1.37 -9.96 16 24 C 0.03 0.71 2.64 30.64 0.08 0.79 16 25 H 0.16 2.37 8.14 -2.39 -0.02 2.35 16 26 C 0.46 11.94 2.54 71.98 0.18 12.13 16 27 F -0.17 -5.34 13.13 44.97 0.59 -4.75 16 28 F -0.17 -4.28 17.32 44.97 0.78 -3.50 16 29 F -0.17 -4.75 15.11 44.97 0.68 -4.07 16 30 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 31 H 0.37 20.14 7.80 -92.70 -0.72 19.42 16 32 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.39 9.39 9.12 -74.06 -0.68 8.71 16 35 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.06 2.28 7.39 -2.39 -0.02 2.26 16 37 H 0.41 14.86 5.72 -92.71 -0.53 14.32 16 38 H 0.14 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.09 2.44 5.04 -2.41 -0.01 2.43 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.14 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -70.65 345.94 0.37 -70.28 By element: Atomic # 1 Polarization: 47.47 SS G_CDS: -0.80 Total: 46.67 kcal Atomic # 6 Polarization: 27.43 SS G_CDS: 4.19 Total: 31.62 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -2.73 Total: -119.84 kcal Atomic # 8 Polarization: -58.87 SS G_CDS: -4.36 Total: -63.23 kcal Atomic # 9 Polarization: -14.37 SS G_CDS: 2.05 Total: -12.32 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -70.65 0.37 -70.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486008561.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -235.827 kcal (2) G-P(sol) polarization free energy of solvation -70.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -306.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -306.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds