Wall clock time and date at job start Wed Apr 1 2020 01:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30276 * 126.28250 * 2 1 4 4 N 1.28674 * 109.37873 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38187 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.28028 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47433 * 89.97372 * 6 5 4 8 8 O 1.21290 * 119.99589 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00366 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99944 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46694 * 180.02562 * 10 9 7 12 12 N 1.46508 * 109.47159 * 180.02562 * 11 10 9 13 13 C 1.46497 * 119.99941 * 89.99525 * 12 11 10 14 14 C 1.34778 * 119.99705 * 270.00598 * 12 11 10 15 15 O 1.21281 * 119.99812 * 359.97438 * 14 12 11 16 16 C 1.50697 * 119.99883 * 179.97438 * 14 12 11 17 17 S 1.80997 * 109.47061 * 179.97438 * 16 14 12 18 18 C 1.76200 * 99.99714 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00517 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99989 * 180.02562 * 18 17 16 21 21 N 1.31639 * 119.99673 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00356 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46741 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47056 * 119.99950 * 22 20 18 25 25 H 1.48495 * 109.47013 * 239.99921 * 22 20 18 26 26 O 1.34364 * 107.43764 * 359.97438 * 5 4 3 27 27 H 1.08997 * 109.47444 * 90.01974 * 1 2 3 28 28 H 1.09002 * 109.46698 * 210.02579 * 1 2 3 29 29 H 1.09002 * 109.47090 * 330.01523 * 1 2 3 30 30 H 1.09006 * 109.47243 * 209.97514 * 6 5 4 31 31 H 1.09004 * 109.47210 * 329.97528 * 6 5 4 32 32 H 0.97002 * 119.99798 * 359.97438 * 9 7 6 33 33 H 1.08992 * 109.47261 * 299.99742 * 10 9 7 34 34 H 1.08998 * 109.47220 * 60.00528 * 10 9 7 35 35 H 1.09001 * 109.47552 * 299.99677 * 11 10 9 36 36 H 1.08997 * 109.47602 * 60.00101 * 11 10 9 37 37 H 1.09006 * 109.46880 * 90.00801 * 13 12 11 38 38 H 1.09001 * 109.47184 * 210.00327 * 13 12 11 39 39 H 1.08994 * 109.47502 * 330.00362 * 13 12 11 40 40 H 1.09006 * 109.46867 * 299.99503 * 16 14 12 41 41 H 1.09001 * 109.47038 * 59.99125 * 16 14 12 42 42 H 0.96998 * 119.99407 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0014 7 6 5.2342 -1.7431 1.4225 8 8 4.5783 -1.3048 2.3438 9 7 6.3347 -2.4806 1.6696 10 6 6.7399 -2.7515 3.0512 11 6 8.0112 -3.6028 3.0522 12 7 8.4161 -3.8743 4.4338 13 6 7.9125 -5.0642 5.1243 14 6 9.2517 -3.0292 5.0695 15 8 9.6687 -2.0443 4.4977 16 6 9.6677 -3.3081 6.4908 17 16 10.7845 -2.0024 7.0598 18 6 11.1022 -2.5645 8.6992 19 1 10.6431 -3.4743 9.0567 20 6 11.9419 -1.8375 9.5317 21 7 12.5012 -0.7282 9.0962 22 14 12.2783 -2.4330 11.2700 23 1 11.5344 -3.6950 11.5134 24 1 13.7338 -2.6754 11.4372 25 1 11.8335 -1.4016 12.2413 26 8 2.3021 -1.0832 0.0002 27 1 -0.3634 -0.0004 -1.0276 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3633 0.8901 0.5136 30 1 4.6248 -2.4057 -0.5124 31 1 5.6151 -0.9265 -0.5120 32 1 6.8586 -2.8320 0.9328 33 1 6.9334 -1.8097 3.5645 34 1 5.9424 -3.2882 3.5651 35 1 7.8182 -4.5448 2.5389 36 1 8.8085 -3.0658 2.5384 37 1 8.5930 -5.8985 4.9537 38 1 7.8456 -4.8628 6.1934 39 1 6.9245 -5.3167 4.7396 40 1 8.7846 -3.3352 7.1292 41 1 10.1794 -4.2695 6.5376 42 1 13.0883 -0.2204 9.6779 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495993944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:31 Heat of formation + Delta-G solvation = -27.916624 kcal Electronic energy + Delta-G solvation = -25842.976582 eV Core-core repulsion = 21759.038627 eV Total energy + Delta-G solvation = -4083.937954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.55463 -40.20550 -39.47040 -36.48702 -36.12801 -34.74829 -34.03039 -32.44040 -31.75739 -30.51659 -28.51380 -27.55297 -26.41614 -25.49615 -23.74505 -23.02942 -22.66668 -21.11212 -19.33276 -18.20170 -17.72623 -17.61661 -17.09760 -16.79011 -16.66284 -16.03592 -15.79829 -15.37930 -15.09211 -14.81711 -14.71126 -14.22428 -14.14659 -13.90550 -13.64895 -13.28811 -13.27065 -13.06471 -12.84760 -12.68799 -12.58757 -12.45026 -12.41171 -12.15361 -11.86730 -11.56225 -11.28759 -11.08001 -11.03430 -10.76931 -10.53969 -9.82705 -9.81511 -9.50097 -9.46047 -9.08602 -8.72847 -8.24802 -6.52166 -6.23047 -3.93969 0.75027 1.77700 2.03105 2.15039 2.53288 2.93946 3.04552 3.20876 3.25883 3.30439 3.36933 3.58082 3.93678 4.18564 4.19004 4.31719 4.53752 4.60542 4.66774 4.76976 4.81727 4.96334 5.01483 5.02575 5.11936 5.12275 5.15423 5.17353 5.35391 5.38981 5.51144 5.61833 5.70945 5.75157 5.86222 5.93868 6.09180 6.48547 6.98185 7.37270 7.58614 7.73333 7.97212 8.33958 8.43878 9.22385 10.84443 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.019933 B = 0.001701 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.387723 B =16460.141720 C =17021.585778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.165 3.835 3 N -0.287 5.287 4 N -0.269 5.269 5 C 0.180 3.820 6 C -0.044 4.044 7 C 0.518 3.482 8 O -0.524 6.524 9 N -0.720 5.720 10 C 0.102 3.898 11 C 0.109 3.891 12 N -0.623 5.623 13 C 0.080 3.920 14 C 0.533 3.467 15 O -0.511 6.511 16 C -0.151 4.151 17 S -0.061 6.061 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 O -0.222 6.222 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.108 0.892 30 H 0.130 0.870 31 H 0.144 0.856 32 H 0.404 0.596 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.077 0.923 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.831 -10.171 -21.899 31.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.046 4.046 3 N -0.135 5.135 4 N -0.116 5.116 5 C -0.032 4.032 6 C -0.086 4.086 7 C 0.301 3.699 8 O -0.399 6.399 9 N -0.373 5.373 10 C -0.022 4.022 11 C -0.015 4.015 12 N -0.360 5.360 13 C -0.064 4.064 14 C 0.321 3.679 15 O -0.384 6.384 16 C -0.301 4.301 17 S 0.165 5.835 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.502 5.502 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 O -0.101 6.101 27 H 0.118 0.882 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.148 0.852 31 H 0.162 0.838 32 H 0.238 0.762 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.110 0.890 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.087 0.913 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -20.188 -7.007 -22.002 30.671 hybrid contribution -0.378 -2.980 1.515 3.364 sum -20.567 -9.987 -20.487 30.699 Atomic orbital electron populations 1.20376 0.80052 1.05947 1.05209 1.28026 0.97848 0.79516 0.99174 1.74417 0.95943 1.25562 1.17542 1.74388 1.12363 1.08878 1.15957 1.26801 0.84682 0.91333 1.00349 1.20076 0.90379 1.00757 0.97351 1.20012 0.81074 0.78613 0.90175 1.90819 1.53172 1.49984 1.45954 1.45674 1.27857 1.54276 1.09495 1.21845 0.96915 1.01440 0.82043 1.21428 0.96248 0.99591 0.84257 1.47751 1.48769 1.26011 1.13470 1.21815 0.99040 0.86998 0.98512 1.20440 0.77218 0.82008 0.88211 1.90711 1.53642 1.26861 1.67171 1.23560 1.05086 1.06999 0.94456 1.85426 1.55520 1.28159 1.14367 1.22894 1.34128 1.12851 0.98474 0.90853 1.25002 0.94911 0.94602 0.99083 1.70031 1.29283 1.14336 1.36552 0.86110 0.78181 0.78724 0.82437 1.19615 1.20551 1.20554 1.84735 1.17347 1.38385 1.69635 0.88238 0.88790 0.87377 0.85242 0.83802 0.76163 0.90283 0.91135 0.90125 0.88983 0.92429 0.90388 0.91339 0.89104 0.89120 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 36.00 0.38 0.14 16 2 C 0.16 1.61 8.48 -12.94 -0.11 1.50 16 3 N -0.29 -3.76 12.22 32.55 0.40 -3.36 16 4 N -0.27 -3.69 12.22 32.55 0.40 -3.30 16 5 C 0.18 1.94 6.97 -12.94 -0.09 1.85 16 6 C -0.04 -0.28 6.33 -29.04 -0.18 -0.46 16 7 C 0.52 5.17 7.82 -10.99 -0.09 5.09 16 8 O -0.52 -8.18 16.03 5.55 0.09 -8.10 16 9 N -0.72 -5.51 5.56 -60.30 -0.33 -5.85 16 10 C 0.10 1.08 6.00 -4.04 -0.02 1.06 16 11 C 0.11 1.06 5.52 -4.04 -0.02 1.03 16 12 N -0.62 -7.91 2.87 -181.57 -0.52 -8.43 16 13 C 0.08 0.73 10.24 59.85 0.61 1.34 16 14 C 0.53 9.69 7.69 -10.99 -0.08 9.61 16 15 O -0.51 -11.23 15.44 5.56 0.09 -11.14 16 16 C -0.15 -2.99 4.71 36.00 0.17 -2.82 16 17 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 18 C -0.54 -15.17 9.50 30.94 0.29 -14.88 16 19 H 0.07 1.96 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.09 5.49 -17.42 -0.10 1.99 16 21 N -0.87 -26.15 13.22 55.49 0.73 -25.42 16 22 Si 0.92 21.37 29.55 -169.99 -5.02 16.35 16 23 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 26 O -0.22 -2.28 10.87 5.37 0.06 -2.23 16 27 H 0.10 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.11 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.13 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.14 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.40 1.45 8.47 -40.82 -0.35 1.11 16 33 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 36 H 0.09 1.01 7.42 -51.93 -0.39 0.62 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.08 0.76 6.44 -51.93 -0.33 0.42 16 39 H 0.07 0.46 8.07 -51.93 -0.42 0.04 16 40 H 0.09 1.67 7.40 -51.91 -0.38 1.29 16 41 H 0.09 1.65 8.11 -51.91 -0.42 1.23 16 42 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 384.40 15.07 5.79 5.79 Total: -1.00 -42.33 384.40 -5.41 -47.74 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: -5.64 Total: -3.63 kcal Atomic # 6 Polarization: 4.69 SS G_CDS: 0.76 Total: 5.44 kcal Atomic # 7 Polarization: -47.03 SS G_CDS: 0.67 Total: -46.36 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: 0.23 Total: -21.46 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -42.33 -5.41 -47.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495993944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.824 kcal (2) G-P(sol) polarization free energy of solvation -42.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds