Wall clock time and date at job start Wed Apr 1 2020 01:33:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30276 * 126.28250 * 2 1 4 4 N 1.28674 * 109.37873 * 179.97438 * 3 2 1 5 5 C 1.30272 * 109.38187 * 0.02562 * 4 3 2 6 6 C 1.50701 * 126.28028 * 180.02562 * 5 4 3 7 7 C 1.50697 * 109.47433 * 89.97372 * 6 5 4 8 8 O 1.21290 * 119.99589 * 0.02562 * 7 6 5 9 9 N 1.34770 * 120.00366 * 179.97438 * 7 6 5 10 10 C 1.46504 * 119.99944 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.46694 * 180.02562 * 10 9 7 12 12 N 1.46508 * 109.47159 * 180.02562 * 11 10 9 13 13 C 1.46497 * 119.99941 * 89.99525 * 12 11 10 14 14 C 1.34778 * 119.99705 * 270.00598 * 12 11 10 15 15 O 1.21281 * 119.99812 * 359.97438 * 14 12 11 16 16 C 1.50697 * 119.99883 * 179.97438 * 14 12 11 17 17 S 1.80997 * 109.47061 * 179.97438 * 16 14 12 18 18 C 1.76200 * 99.99714 * 179.97438 * 17 16 14 19 19 H 1.07994 * 120.00517 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99989 * 180.02562 * 18 17 16 21 21 N 1.31639 * 119.99673 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00356 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46741 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47056 * 119.99950 * 22 20 18 25 25 H 1.48495 * 109.47013 * 239.99921 * 22 20 18 26 26 O 1.34364 * 107.43764 * 359.97438 * 5 4 3 27 27 H 1.08997 * 109.47444 * 90.01974 * 1 2 3 28 28 H 1.09002 * 109.46698 * 210.02579 * 1 2 3 29 29 H 1.09002 * 109.47090 * 330.01523 * 1 2 3 30 30 H 1.09006 * 109.47243 * 209.97514 * 6 5 4 31 31 H 1.09004 * 109.47210 * 329.97528 * 6 5 4 32 32 H 0.97002 * 119.99798 * 359.97438 * 9 7 6 33 33 H 1.08992 * 109.47261 * 299.99742 * 10 9 7 34 34 H 1.08998 * 109.47220 * 60.00528 * 10 9 7 35 35 H 1.09001 * 109.47552 * 299.99677 * 11 10 9 36 36 H 1.08997 * 109.47602 * 60.00101 * 11 10 9 37 37 H 1.09006 * 109.46880 * 90.00801 * 13 12 11 38 38 H 1.09001 * 109.47184 * 210.00327 * 13 12 11 39 39 H 1.08994 * 109.47502 * 330.00362 * 13 12 11 40 40 H 1.09006 * 109.46867 * 299.99503 * 16 14 12 41 41 H 1.09001 * 109.47038 * 59.99125 * 16 14 12 42 42 H 0.96998 * 119.99407 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0502 0.0000 4 7 3.5091 0.6760 0.0005 5 6 3.5654 -0.6255 0.0004 6 6 4.8176 -1.4639 0.0014 7 6 5.2342 -1.7431 1.4225 8 8 4.5783 -1.3048 2.3438 9 7 6.3347 -2.4806 1.6696 10 6 6.7399 -2.7515 3.0512 11 6 8.0112 -3.6028 3.0522 12 7 8.4161 -3.8743 4.4338 13 6 7.9125 -5.0642 5.1243 14 6 9.2517 -3.0292 5.0695 15 8 9.6687 -2.0443 4.4977 16 6 9.6677 -3.3081 6.4908 17 16 10.7845 -2.0024 7.0598 18 6 11.1022 -2.5645 8.6992 19 1 10.6431 -3.4743 9.0567 20 6 11.9419 -1.8375 9.5317 21 7 12.5012 -0.7282 9.0962 22 14 12.2783 -2.4330 11.2700 23 1 11.5344 -3.6950 11.5134 24 1 13.7338 -2.6754 11.4372 25 1 11.8335 -1.4016 12.2413 26 8 2.3021 -1.0832 0.0002 27 1 -0.3634 -0.0004 -1.0276 28 1 -0.3633 -0.8898 0.5143 29 1 -0.3633 0.8901 0.5136 30 1 4.6248 -2.4057 -0.5124 31 1 5.6151 -0.9265 -0.5120 32 1 6.8586 -2.8320 0.9328 33 1 6.9334 -1.8097 3.5645 34 1 5.9424 -3.2882 3.5651 35 1 7.8182 -4.5448 2.5389 36 1 8.8085 -3.0658 2.5384 37 1 8.5930 -5.8985 4.9537 38 1 7.8456 -4.8628 6.1934 39 1 6.9245 -5.3167 4.7396 40 1 8.7846 -3.3352 7.1292 41 1 10.1794 -4.2695 6.5376 42 1 13.0883 -0.2204 9.6779 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495993944.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:30 Heat of formation + Delta-G solvation = -66.135230 kcal Electronic energy + Delta-G solvation = -25844.633865 eV Core-core repulsion = 21759.038627 eV Total energy + Delta-G solvation = -4085.595237 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.32395 -41.15448 -40.64756 -37.29017 -37.22761 -35.74109 -34.69786 -34.59529 -32.47945 -31.52325 -29.63930 -28.27891 -27.70817 -27.28006 -24.64151 -23.80401 -23.45805 -21.91101 -20.65625 -19.57362 -18.97211 -18.36733 -18.13813 -17.81038 -17.59839 -16.96963 -16.88733 -16.79859 -16.56696 -15.87177 -15.76928 -15.35774 -15.10380 -14.95666 -14.50796 -14.32050 -14.26158 -13.99226 -13.61124 -13.57612 -13.51895 -13.42313 -13.23271 -13.16777 -13.05631 -12.98402 -12.91309 -12.63686 -12.37667 -12.04765 -11.70985 -11.43399 -11.16927 -10.95396 -10.58733 -10.30344 -10.27521 -9.79678 -8.68753 -8.35957 -6.14340 0.02605 1.10297 1.24183 1.26091 1.39485 1.40701 1.44099 1.51944 1.56288 1.87846 2.25762 2.35987 2.76571 2.98431 3.25308 3.35965 3.59317 3.69622 3.78893 3.84246 4.02520 4.09149 4.20582 4.32198 4.32404 4.37904 4.39453 4.47423 4.54555 4.55403 4.69138 4.70181 4.74174 4.90004 4.97271 5.02429 5.17799 5.40916 5.53562 6.18139 6.20374 6.35100 7.05403 7.05883 7.10681 7.17919 8.73571 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.019933 B = 0.001701 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.387723 B =16460.141720 C =17021.585778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.172 3.828 3 N -0.336 5.336 4 N -0.317 5.317 5 C 0.178 3.822 6 C -0.036 4.036 7 C 0.515 3.485 8 O -0.589 6.589 9 N -0.699 5.699 10 C 0.111 3.889 11 C 0.112 3.888 12 N -0.610 5.610 13 C 0.069 3.931 14 C 0.530 3.470 15 O -0.561 6.561 16 C -0.125 4.125 17 S -0.157 6.157 18 C -0.545 4.545 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.912 5.912 22 Si 1.000 3.000 23 H -0.255 1.255 24 H -0.273 1.273 25 H -0.276 1.276 26 O -0.226 6.226 27 H 0.127 0.873 28 H 0.113 0.887 29 H 0.114 0.886 30 H 0.182 0.818 31 H 0.172 0.828 32 H 0.427 0.573 33 H 0.028 0.972 34 H 0.074 0.926 35 H 0.135 0.865 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.102 0.898 40 H 0.106 0.894 41 H 0.111 0.889 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.294 -13.957 -22.797 34.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.039 4.039 3 N -0.182 5.182 4 N -0.162 5.162 5 C -0.035 4.035 6 C -0.076 4.076 7 C 0.301 3.699 8 O -0.469 6.469 9 N -0.353 5.353 10 C -0.015 4.015 11 C -0.011 4.011 12 N -0.344 5.344 13 C -0.072 4.072 14 C 0.317 3.683 15 O -0.439 6.439 16 C -0.276 4.276 17 S 0.071 5.929 18 C -0.692 4.692 19 H 0.102 0.898 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.179 1.179 24 H -0.198 1.198 25 H -0.201 1.201 26 O -0.105 6.105 27 H 0.145 0.855 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.199 0.801 31 H 0.189 0.811 32 H 0.266 0.734 33 H 0.046 0.954 34 H 0.092 0.908 35 H 0.153 0.847 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.129 0.871 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.659 -10.850 -22.960 33.377 hybrid contribution -0.056 -1.897 1.692 2.542 sum -21.716 -12.747 -21.268 32.961 Atomic orbital electron populations 1.20744 0.76360 1.07173 1.07273 1.29096 0.99524 0.78723 0.96527 1.74315 0.96378 1.27379 1.20126 1.74274 1.13185 1.10781 1.17972 1.27591 0.85947 0.91135 0.98796 1.20376 0.89209 1.02940 0.95055 1.20672 0.80616 0.77505 0.91117 1.90800 1.55347 1.52559 1.48215 1.45450 1.27320 1.53406 1.09165 1.21567 0.97519 0.99108 0.83271 1.21653 0.95038 1.01840 0.82609 1.47729 1.46573 1.25583 1.14500 1.22161 1.01310 0.85728 0.98032 1.20192 0.78178 0.82295 0.87620 1.90694 1.56088 1.29190 1.67953 1.23387 1.03725 1.04472 0.96000 1.85610 1.58566 1.33191 1.15581 1.23231 1.34270 1.13179 0.98560 0.89803 1.26153 0.94441 0.94565 1.04078 1.70200 1.30214 1.15933 1.38487 0.84892 0.78321 0.78665 0.75987 1.17859 1.19804 1.20133 1.84758 1.17408 1.38528 1.69841 0.85531 0.86835 0.86734 0.80073 0.81058 0.73351 0.95389 0.90770 0.84696 0.90258 0.90232 0.91117 0.87944 0.87619 0.87054 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.38 10.51 71.24 0.75 0.37 16 2 C 0.17 3.30 8.48 88.34 0.75 4.05 16 3 N -0.34 -9.11 12.22 -165.50 -2.02 -11.13 16 4 N -0.32 -8.97 12.22 -165.50 -2.02 -10.99 16 5 C 0.18 3.73 6.97 88.34 0.62 4.34 16 6 C -0.04 -0.36 6.33 29.10 0.18 -0.17 16 7 C 0.52 9.71 7.82 87.66 0.69 10.40 16 8 O -0.59 -18.87 16.03 -3.06 -0.05 -18.92 16 9 N -0.70 -9.27 5.56 -463.07 -2.57 -11.84 16 10 C 0.11 2.23 6.00 86.38 0.52 2.75 16 11 C 0.11 1.87 5.52 86.38 0.48 2.35 16 12 N -0.61 -14.20 2.87 -846.75 -2.43 -16.63 16 13 C 0.07 1.00 10.24 127.77 1.31 2.31 16 14 C 0.53 19.24 7.69 87.66 0.67 19.92 16 15 O -0.56 -25.67 15.44 -3.03 -0.05 -25.72 16 16 C -0.12 -4.93 4.71 71.23 0.34 -4.59 16 17 S -0.16 -8.78 20.57 -56.49 -1.16 -9.94 16 18 C -0.54 -31.23 9.50 67.96 0.65 -30.58 16 19 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 20 C 0.01 0.70 5.49 84.86 0.47 1.17 16 21 N -0.91 -56.55 13.22 21.65 0.29 -56.26 16 22 Si 1.00 43.79 29.55 68.60 2.03 45.82 16 23 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 26 O -0.23 -4.45 10.87 -3.71 -0.04 -4.49 16 27 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 28 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.18 -0.12 8.14 -2.38 -0.02 -0.14 16 31 H 0.17 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.43 1.55 8.47 -92.71 -0.79 0.77 16 33 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.14 0.91 8.07 -2.39 -0.02 0.89 16 36 H 0.08 1.62 7.42 -2.39 -0.02 1.60 16 37 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 38 H 0.07 1.17 6.44 -2.39 -0.02 1.15 16 39 H 0.10 0.86 8.07 -2.39 -0.02 0.84 16 40 H 0.11 3.83 7.40 -2.39 -0.02 3.81 16 41 H 0.11 3.90 8.11 -2.39 -0.02 3.88 16 42 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -102.06 384.40 -0.35 -102.41 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 0.28 Total: 5.38 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 7.41 Total: 12.31 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -8.77 Total: -106.86 kcal Atomic # 8 Polarization: -48.98 SS G_CDS: -0.14 Total: -49.12 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -8.78 SS G_CDS: -1.16 Total: -9.94 kcal Total: -102.06 -0.35 -102.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495993944.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.278 kcal (2) G-P(sol) polarization free energy of solvation -102.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds