Wall clock time and date at job start Wed Apr 1 2020 00:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86790 * 119.99920 * 2 1 4 4 H 1.48503 * 109.47471 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47473 * 120.00043 * 3 2 1 6 6 H 1.48500 * 109.47380 * 239.99943 * 3 2 1 7 7 C 1.38810 * 119.99779 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99963 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00222 * 0.02562 * 7 2 1 10 10 C 1.46506 * 120.00288 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47272 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.47276 * 59.99937 * 11 10 9 13 13 O 1.42899 * 109.47188 * 299.99648 * 11 10 9 14 14 C 1.52998 * 109.46734 * 179.97438 * 11 10 9 15 15 N 1.46502 * 109.46854 * 185.00024 * 14 11 10 16 16 C 1.34776 * 120.00161 * 180.02562 * 15 14 11 17 17 O 1.21278 * 119.99887 * 355.14607 * 16 15 14 18 18 C 1.50707 * 120.00167 * 175.14268 * 16 15 14 19 19 H 1.09001 * 109.52305 * 322.20109 * 18 16 15 20 20 O 1.43071 * 109.52349 * 202.06961 * 18 16 15 21 21 C 1.43201 * 113.51566 * 297.98267 * 20 18 16 22 22 C 1.53136 * 109.18951 * 302.09392 * 21 20 18 23 23 O 1.43078 * 109.15323 * 55.31512 * 22 21 20 24 24 C 1.43073 * 113.59038 * 302.04829 * 23 22 21 25 25 H 1.09001 * 109.58081 * 298.01730 * 24 23 22 26 26 C 1.52999 * 109.52315 * 177.85009 * 24 23 22 27 27 F 1.39900 * 109.47259 * 307.21014 * 26 24 23 28 28 F 1.39902 * 109.46944 * 67.21422 * 26 24 23 29 29 F 1.39901 * 109.46990 * 187.20916 * 26 24 23 30 30 H 0.96999 * 120.00078 * 179.97438 * 1 2 3 31 31 H 0.97004 * 120.00493 * 359.97438 * 9 7 2 32 32 H 1.09007 * 109.46610 * 299.99597 * 10 9 7 33 33 H 1.08997 * 109.47021 * 59.99786 * 10 9 7 34 34 H 0.96699 * 113.99658 * 300.00267 * 13 11 10 35 35 H 1.09001 * 109.47406 * 304.99577 * 14 11 10 36 36 H 1.08996 * 109.47135 * 65.00365 * 14 11 10 37 37 H 0.97001 * 120.00090 * 359.97438 * 15 14 11 38 38 H 1.09001 * 109.50261 * 182.17833 * 21 20 18 39 39 H 1.09002 * 109.51054 * 62.01033 * 21 20 18 40 40 H 1.08997 * 109.52459 * 295.41211 * 22 21 20 41 41 H 1.09002 * 109.52696 * 175.21874 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 2.0580 -3.6568 -0.0016 11 6 1.0638 -4.8197 -0.0035 12 1 0.4382 -4.7614 -0.8942 13 8 0.2409 -4.7449 1.1624 14 6 1.8288 -6.1447 -0.0042 15 7 0.8815 -7.2555 -0.1264 16 6 1.3315 -8.5257 -0.1482 17 8 2.5240 -8.7465 -0.1555 18 6 0.3529 -9.6717 -0.1635 19 1 -0.4990 -9.4318 0.4728 20 8 0.9943 -10.8547 0.3222 21 6 2.1008 -11.2764 -0.4831 22 6 1.6175 -11.5175 -1.9160 23 8 0.9756 -10.3341 -2.4003 24 6 -0.1305 -9.9129 -1.5965 25 1 -0.8979 -10.6869 -1.5966 26 6 -0.7114 -8.6167 -2.1651 27 9 0.3108 -7.6732 -2.3136 28 9 -1.2936 -8.8737 -3.4110 29 9 -1.6829 -8.1180 -1.2905 30 1 -0.4850 -0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0016 32 1 2.6853 -3.7142 -0.8912 33 1 2.6840 -3.7150 0.8888 34 1 0.7322 -4.7908 1.9940 35 1 2.5216 -6.1639 -0.8455 36 1 2.3858 -6.2431 0.9276 37 1 -0.0698 -7.0768 -0.1909 38 1 2.5148 -12.1998 -0.0779 39 1 2.8675 -10.5015 -0.4828 40 1 0.9097 -12.3464 -1.9271 41 1 2.4695 -11.7563 -2.5526 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497000457.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:47 Heat of formation + Delta-G solvation = -283.060413 kcal Electronic energy + Delta-G solvation = -32280.288786 eV Core-core repulsion = 27168.384604 eV Total energy + Delta-G solvation = -5111.904182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.128 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.64292 -48.15626 -48.01932 -41.39953 -39.17416 -37.72631 -36.69292 -34.74420 -34.29518 -33.11757 -31.33404 -29.42874 -29.00972 -27.20535 -25.07465 -23.98394 -23.14976 -22.35021 -21.63943 -20.62242 -19.17250 -19.02895 -18.76180 -17.82836 -17.33395 -17.29796 -17.16630 -16.60257 -16.14280 -16.01479 -15.60506 -15.25900 -14.99450 -14.77341 -14.69989 -14.61199 -14.46216 -14.25946 -14.17010 -14.12524 -13.89769 -13.70686 -13.29690 -13.06550 -12.86451 -12.70455 -12.45756 -12.37832 -11.97551 -11.80907 -11.37568 -10.89479 -10.71492 -10.50428 -10.42003 -10.03728 -9.88796 -9.35835 -9.23710 -9.12131 -8.91244 -7.02215 -6.10192 -3.10529 1.78169 2.06716 2.57674 2.80099 2.95936 3.24566 3.31772 3.52009 3.55782 3.73370 3.76698 3.95322 4.09259 4.33348 4.40981 4.43826 4.52881 4.62179 4.66097 4.79764 4.82421 5.13354 5.16659 5.45942 5.53477 5.58855 5.70695 5.84807 5.97266 6.03438 6.18860 6.23320 6.42106 6.57108 7.12886 7.75885 7.81417 7.85946 8.77036 9.22851 10.09354 10.24000 11.38421 Molecular weight = 342.13amu Principal moments of inertia in cm(-1) A = 0.021099 B = 0.002689 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.779408 B =10409.086815 C =10984.278185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.044 4.044 3 Si 1.081 2.919 4 H -0.284 1.284 5 H -0.295 1.295 6 H -0.295 1.295 7 C -0.336 4.336 8 H 0.064 0.936 9 N -0.737 5.737 10 C 0.133 3.867 11 C 0.087 3.913 12 H 0.104 0.896 13 O -0.553 6.553 14 C 0.092 3.908 15 N -0.711 5.711 16 C 0.494 3.506 17 O -0.519 6.519 18 C 0.043 3.957 19 H 0.148 0.852 20 O -0.339 6.339 21 C -0.013 4.013 22 C 0.031 3.969 23 O -0.352 6.352 24 C 0.022 3.978 25 H 0.125 0.875 26 C 0.460 3.540 27 F -0.158 7.158 28 F -0.168 7.168 29 F -0.169 7.169 30 H 0.257 0.743 31 H 0.372 0.628 32 H 0.030 0.970 33 H 0.024 0.976 34 H 0.374 0.626 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.403 0.597 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.066 0.934 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.843 -28.198 -2.341 28.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.242 4.242 3 Si 0.912 3.088 4 H -0.210 1.210 5 H -0.223 1.223 6 H -0.222 1.222 7 C -0.467 4.467 8 H 0.082 0.918 9 N -0.383 5.383 10 C 0.005 3.995 11 C 0.027 3.973 12 H 0.122 0.878 13 O -0.358 6.358 14 C -0.032 4.032 15 N -0.365 5.365 16 C 0.279 3.721 17 O -0.396 6.396 18 C -0.019 4.019 19 H 0.165 0.835 20 O -0.256 6.256 21 C -0.089 4.089 22 C -0.045 4.045 23 O -0.270 6.270 24 C -0.039 4.039 25 H 0.143 0.857 26 C 0.405 3.595 27 F -0.139 7.139 28 F -0.149 7.149 29 F -0.151 7.151 30 H 0.068 0.932 31 H 0.206 0.794 32 H 0.048 0.952 33 H 0.042 0.958 34 H 0.222 0.778 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.239 0.761 38 H 0.129 0.871 39 H 0.136 0.864 40 H 0.085 0.915 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -0.374 -26.614 -2.790 26.763 hybrid contribution -0.127 -1.580 0.201 1.598 sum -0.501 -28.195 -2.590 28.318 Atomic orbital electron populations 1.70862 1.06033 1.28634 1.53145 1.25807 0.97070 1.01013 1.00272 0.83230 0.74193 0.75529 0.75852 1.20979 1.22254 1.22246 1.20017 0.91986 0.85759 1.48970 0.91812 1.42222 1.05149 1.00320 1.90619 1.21116 0.93347 0.86049 0.99035 1.22412 0.93340 0.91892 0.89626 0.87837 1.86568 1.37066 1.96435 1.15766 1.22127 0.92273 0.85602 1.03184 1.46184 1.11600 1.05414 1.73334 1.20904 0.89950 0.84296 0.76966 1.90543 1.16303 1.83523 1.49224 1.22715 0.96954 0.87094 0.95141 0.83510 1.88275 1.46891 1.39547 1.50856 1.24031 0.90994 1.03737 0.90098 1.23448 0.98396 0.86019 0.96669 1.88182 1.44198 1.45830 1.48827 1.23726 0.93456 0.95274 0.91482 0.85731 1.19997 0.76727 0.85995 0.76761 1.93331 1.58353 1.66848 1.95396 1.93243 1.84797 1.93984 1.42875 1.93220 1.64184 1.88657 1.69015 0.93190 0.79371 0.95223 0.95816 0.77827 0.89970 0.90758 0.76053 0.87117 0.86444 0.91526 0.86354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.64 13.70 55.49 0.76 -28.88 16 2 C -0.04 -1.29 5.50 -17.43 -0.10 -1.39 16 3 Si 1.08 26.21 29.92 -169.99 -5.09 21.12 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.30 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.34 -9.67 9.99 -15.06 -0.15 -9.82 16 8 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 9 N -0.74 -18.83 5.49 -59.91 -0.33 -19.16 16 10 C 0.13 2.63 5.92 -4.04 -0.02 2.61 16 11 C 0.09 1.36 3.09 -26.73 -0.08 1.28 16 12 H 0.10 1.69 8.14 -51.93 -0.42 1.27 16 13 O -0.55 -8.70 13.03 -35.23 -0.46 -9.16 16 14 C 0.09 1.22 5.32 -4.04 -0.02 1.20 16 15 N -0.71 -8.48 3.47 -60.29 -0.21 -8.69 16 16 C 0.49 6.03 5.50 -10.98 -0.06 5.97 16 17 O -0.52 -7.70 13.50 -13.25 -0.18 -7.88 16 18 C 0.04 0.40 3.06 -27.80 -0.09 0.31 16 19 H 0.15 0.97 7.81 -51.93 -0.41 0.56 16 20 O -0.34 -3.27 10.62 -61.99 -0.66 -3.92 16 21 C -0.01 -0.11 6.61 37.23 0.25 0.14 16 22 C 0.03 0.21 7.05 37.23 0.26 0.47 16 23 O -0.35 -3.45 10.06 -48.72 -0.49 -3.94 16 24 C 0.02 0.18 2.64 -26.66 -0.07 0.11 16 25 H 0.13 0.68 8.14 -51.93 -0.42 0.25 16 26 C 0.46 4.52 2.54 37.16 0.09 4.62 16 27 F -0.16 -1.95 13.13 2.25 0.03 -1.92 16 28 F -0.17 -1.75 17.32 2.25 0.04 -1.72 16 29 F -0.17 -1.51 15.12 2.25 0.03 -1.48 16 30 H 0.26 8.01 6.77 -40.82 -0.28 7.73 16 31 H 0.37 9.90 6.38 -40.82 -0.26 9.64 16 32 H 0.03 0.60 8.14 -51.92 -0.42 0.17 16 33 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.37 4.90 9.05 45.56 0.41 5.31 16 35 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 37 H 0.40 4.46 6.06 -40.82 -0.25 4.21 16 38 H 0.11 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.12 1.29 5.04 -51.93 -0.26 1.03 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.12 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -35.78 346.11 -5.37 -41.15 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -4.05 Total: 13.77 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 0.01 Total: 5.49 kcal Atomic # 7 Polarization: -56.95 SS G_CDS: 0.22 Total: -56.73 kcal Atomic # 8 Polarization: -23.12 SS G_CDS: -1.79 Total: -24.91 kcal Atomic # 9 Polarization: -5.21 SS G_CDS: 0.10 Total: -5.11 kcal Atomic # 14 Polarization: 26.21 SS G_CDS: -5.09 Total: 21.12 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.78 -5.37 -41.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497000457.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -241.911 kcal (2) G-P(sol) polarization free energy of solvation -35.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -277.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -283.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds