Wall clock time and date at job start Wed Apr 1 2020 01:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33388 * 125.19964 * 2 1 4 4 C 1.38429 * 114.92201 * 180.02562 * 3 2 1 5 5 C 1.50697 * 122.53975 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.47066 * 90.00095 * 5 4 3 7 7 C 1.46901 * 110.99870 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46916 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.46700 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.46884 * 179.97438 * 9 8 7 11 11 C 1.46502 * 119.99995 * 90.00303 * 10 9 8 12 12 C 1.34780 * 120.00290 * 270.00432 * 10 9 8 13 13 O 1.21285 * 119.99658 * 359.97438 * 12 10 9 14 14 C 1.50694 * 120.00238 * 180.02562 * 12 10 9 15 15 S 1.81005 * 109.47233 * 179.97438 * 14 12 10 16 16 C 1.76204 * 99.99857 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00342 * 0.02562 * 16 15 14 18 18 C 1.38802 * 119.99504 * 180.02562 * 16 15 14 19 19 N 1.31632 * 119.99532 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00088 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46909 * 90.00598 * 20 18 16 22 22 H 1.48503 * 109.46827 * 210.00145 * 20 18 16 23 23 H 1.48492 * 109.47474 * 330.00042 * 20 18 16 24 24 C 1.33388 * 114.91925 * 0.24683 * 4 3 2 25 25 S 1.75884 * 125.20671 * 180.02562 * 2 1 3 26 26 H 1.08997 * 109.47107 * 90.00204 * 1 2 3 27 27 H 1.09005 * 109.46713 * 209.99619 * 1 2 3 28 28 H 1.08996 * 109.47170 * 329.99224 * 1 2 3 29 29 H 1.07998 * 122.54253 * 0.02562 * 3 2 1 30 30 H 1.09001 * 109.47558 * 330.00258 * 5 4 3 31 31 H 1.08998 * 109.47216 * 209.99921 * 5 4 3 32 32 H 1.00901 * 110.99869 * 56.04737 * 6 5 4 33 33 H 1.09004 * 109.47031 * 299.99620 * 7 6 5 34 34 H 1.08995 * 109.47111 * 59.99900 * 7 6 5 35 35 H 1.08995 * 109.46615 * 299.99641 * 8 7 6 36 36 H 1.08996 * 109.46939 * 60.00272 * 8 7 6 37 37 H 1.08993 * 109.47740 * 299.99810 * 9 8 7 38 38 H 1.09005 * 109.47573 * 59.99976 * 9 8 7 39 39 H 1.08996 * 109.47449 * 89.99787 * 11 10 9 40 40 H 1.09000 * 109.47129 * 210.00406 * 11 10 9 41 41 H 1.08997 * 109.46927 * 329.99946 * 11 10 9 42 42 H 1.08999 * 109.47164 * 299.99591 * 14 12 10 43 43 H 1.09001 * 109.47550 * 59.99679 * 14 12 10 44 44 H 0.97001 * 119.99671 * 179.97438 * 19 18 16 45 45 H 1.07999 * 125.20151 * 179.75071 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6380 0.8430 -0.0006 5 6 4.6622 1.9484 -0.0012 6 7 4.9956 2.3078 1.3836 7 6 5.9933 3.3854 1.4221 8 6 6.3148 3.7309 2.8776 9 6 7.3543 4.8528 2.9176 10 7 7.6617 5.1841 4.3112 11 6 8.7461 4.4874 5.0077 12 6 6.9469 6.1297 4.9526 13 8 6.0494 6.7068 4.3758 14 6 7.2635 6.4709 6.3858 15 16 6.1386 7.7675 6.9601 16 6 6.7170 7.9644 8.6128 17 1 7.5388 7.3632 8.9726 18 6 6.1163 8.8923 9.4523 19 7 6.5480 9.0390 10.6871 20 14 4.6953 9.9328 8.8297 21 1 3.4139 9.2315 9.0973 22 1 4.6978 11.2430 9.5286 23 1 4.8444 10.1510 7.3685 24 6 3.9751 -0.4476 -0.0062 25 16 2.5210 -1.4371 -0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.8668 2.0895 0.0004 30 1 4.2561 2.8198 -0.5150 31 1 5.5617 1.6099 -0.5154 32 1 5.3138 1.5014 1.8999 33 1 6.9022 3.0573 0.9177 34 1 5.5960 4.2665 0.9184 35 1 5.4061 4.0589 3.3823 36 1 6.7123 2.8496 3.3809 37 1 8.2629 4.5246 2.4130 38 1 6.9573 5.7343 2.4141 39 1 9.6793 5.0317 4.8634 40 1 8.5181 4.4328 6.0722 41 1 8.8475 3.4794 4.6056 42 1 7.1417 5.5829 7.0061 43 1 8.2919 6.8251 6.4565 44 1 6.1284 9.6877 11.2737 45 1 4.9863 -0.8268 -0.0114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498516694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:18 Heat of formation + Delta-G solvation = -9.932128 kcal Electronic energy + Delta-G solvation = -23519.453403 eV Core-core repulsion = 19982.588529 eV Total energy + Delta-G solvation = -3536.864874 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.118 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.59441 -38.97774 -36.68723 -35.36339 -33.04603 -32.42438 -31.61387 -29.28028 -27.41632 -26.98422 -26.16592 -25.59186 -23.95009 -21.88204 -21.56471 -19.28666 -19.21394 -17.67183 -17.60404 -16.73669 -16.29539 -15.75870 -15.63233 -15.46979 -15.01070 -14.86095 -14.44634 -14.15511 -13.77459 -13.74342 -13.52248 -13.31974 -13.11979 -12.92491 -12.77488 -12.62830 -12.53538 -12.29378 -12.20879 -11.97322 -11.88995 -11.69929 -11.56526 -11.24254 -11.01280 -10.99267 -10.84438 -10.56402 -9.84158 -9.45262 -8.98837 -8.96642 -8.82073 -8.65391 -8.57428 -8.47096 -6.90133 -6.27644 -3.99101 0.64497 1.28782 1.63993 2.32231 2.73850 2.96200 3.22016 3.34899 3.52240 3.61078 4.00889 4.34611 4.36562 4.60285 4.62988 4.78228 4.80979 4.89435 4.96093 5.02810 5.09971 5.11489 5.13090 5.13159 5.14493 5.21857 5.30949 5.36851 5.40639 5.46207 5.53947 5.58851 5.65592 5.80234 5.80562 6.00440 6.02753 6.05330 6.11962 6.18598 6.59172 6.68732 7.03657 7.45544 7.95431 8.42663 8.46592 9.18705 10.81544 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.001731 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.350779 B =16176.350039 C =17338.309841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.179 4.179 3 C -0.122 4.122 4 C -0.089 4.089 5 C 0.118 3.882 6 N -0.683 5.683 7 C 0.064 3.936 8 C -0.133 4.133 9 C 0.120 3.880 10 N -0.624 5.624 11 C 0.079 3.921 12 C 0.531 3.469 13 O -0.516 6.516 14 C -0.121 4.121 15 S -0.144 6.144 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.095 3.905 19 N -0.881 5.881 20 Si 0.857 3.143 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C -0.215 4.215 25 S 0.089 5.911 26 H 0.074 0.926 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.141 0.859 30 H 0.083 0.917 31 H 0.038 0.962 32 H 0.341 0.659 33 H 0.029 0.971 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.270 0.730 45 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.315 -21.691 -24.553 32.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.296 4.296 3 C -0.152 4.152 4 C -0.102 4.102 5 C -0.013 4.013 6 N -0.315 5.315 7 C -0.066 4.066 8 C -0.172 4.172 9 C -0.003 4.003 10 N -0.359 5.359 11 C -0.064 4.064 12 C 0.318 3.682 13 O -0.390 6.390 14 C -0.272 4.272 15 S 0.083 5.917 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.682 3.318 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.159 1.159 24 C -0.351 4.351 25 S 0.353 5.647 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.159 0.841 30 H 0.101 0.899 31 H 0.056 0.944 32 H 0.159 0.841 33 H 0.047 0.953 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.103 0.897 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.080 0.920 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.463 -21.879 -25.156 33.637 hybrid contribution 1.764 0.673 0.571 1.972 sum -2.699 -21.206 -24.585 32.579 Atomic orbital electron populations 1.20348 0.87755 1.03364 1.02722 1.24477 1.00039 0.95535 1.09521 1.19975 0.92240 0.99483 1.03510 1.18783 0.94764 0.93772 1.02925 1.20581 0.94992 0.95594 0.90158 1.60419 1.45797 1.12624 1.12618 1.21890 0.92758 0.94991 0.96935 1.21928 1.00607 0.98607 0.96099 1.21308 0.97947 0.98639 0.82433 1.47822 1.35443 1.39698 1.12972 1.21787 0.89667 0.96693 0.98261 1.20315 0.81217 0.78368 0.88254 1.90694 1.29896 1.50800 1.67628 1.23313 1.05081 1.04144 0.94613 1.84794 1.45928 1.45875 1.15128 1.22312 1.22614 1.27060 0.94830 0.89421 1.24715 0.96714 0.95875 0.94022 1.69941 1.41237 1.34858 1.05677 0.86731 0.82903 0.80343 0.81865 1.19197 1.19965 1.15916 1.25414 1.01834 0.96247 1.11591 1.84228 0.96937 1.09804 1.73685 0.90755 0.91325 0.90295 0.84126 0.89888 0.94400 0.84066 0.95264 0.90524 0.90179 0.92114 0.91012 0.89733 0.92590 0.90552 0.91408 0.88575 0.88562 0.91965 0.82200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.38 36.01 0.37 -0.11 16 2 C -0.18 -1.44 6.51 -36.00 -0.23 -1.68 16 3 C -0.12 -1.07 9.85 -41.21 -0.41 -1.48 16 4 C -0.09 -0.75 5.31 -106.25 -0.56 -1.31 16 5 C 0.12 0.91 5.94 -4.97 -0.03 0.88 16 6 N -0.68 -6.07 6.49 -115.05 -0.75 -6.82 16 7 C 0.06 0.55 5.69 -3.82 -0.02 0.53 16 8 C -0.13 -1.38 5.80 -26.73 -0.16 -1.53 16 9 C 0.12 1.33 5.41 -4.04 -0.02 1.31 16 10 N -0.62 -8.34 2.87 -181.58 -0.52 -8.86 16 11 C 0.08 0.78 10.24 59.85 0.61 1.39 16 12 C 0.53 9.70 7.69 -10.99 -0.08 9.62 16 13 O -0.52 -11.27 15.44 5.55 0.09 -11.19 16 14 C -0.12 -2.39 4.71 36.00 0.17 -2.22 16 15 S -0.14 -3.69 18.55 -107.50 -1.99 -5.68 16 16 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 17 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 18 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 19 N -0.88 -26.66 13.97 55.49 0.78 -25.88 16 20 Si 0.86 21.96 27.74 -169.99 -4.71 17.25 16 21 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.24 -6.03 6.74 56.52 0.38 -5.65 16 24 C -0.21 -1.64 10.98 29.04 0.32 -1.32 16 25 S 0.09 0.68 23.33 -107.50 -2.51 -1.83 16 26 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 30 H 0.08 0.64 8.13 -51.93 -0.42 0.22 16 31 H 0.04 0.25 8.12 -51.93 -0.42 -0.17 16 32 H 0.34 2.82 8.72 -39.29 -0.34 2.48 16 33 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 38 H 0.08 1.08 7.42 -51.93 -0.39 0.70 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.78 6.44 -51.93 -0.33 0.45 16 41 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 42 H 0.10 1.77 7.40 -51.92 -0.38 1.39 16 43 H 0.10 1.78 8.11 -51.91 -0.42 1.35 16 44 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 401.45 15.07 6.05 6.05 Total: -1.00 -34.33 401.45 -10.76 -45.09 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -7.35 Total: -0.12 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: 0.17 Total: -8.00 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: -0.49 Total: -41.57 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.71 Total: 17.25 kcal Atomic # 16 Polarization: -3.01 SS G_CDS: -4.50 Total: -7.51 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.33 -10.76 -45.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498516694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.156 kcal (2) G-P(sol) polarization free energy of solvation -34.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds