Wall clock time and date at job start Wed Apr 1 2020 01:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33388 * 125.19964 * 2 1 4 4 C 1.38429 * 114.92201 * 180.02562 * 3 2 1 5 5 C 1.50697 * 122.53975 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.47066 * 90.00095 * 5 4 3 7 7 C 1.46901 * 110.99870 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46916 * 180.02562 * 7 6 5 9 9 C 1.52996 * 109.46700 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.46884 * 179.97438 * 9 8 7 11 11 C 1.46502 * 119.99995 * 90.00303 * 10 9 8 12 12 C 1.34780 * 120.00290 * 270.00432 * 10 9 8 13 13 O 1.21285 * 119.99658 * 359.97438 * 12 10 9 14 14 C 1.50694 * 120.00238 * 180.02562 * 12 10 9 15 15 S 1.81005 * 109.47233 * 179.97438 * 14 12 10 16 16 C 1.76204 * 99.99857 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00342 * 0.02562 * 16 15 14 18 18 C 1.38802 * 119.99504 * 180.02562 * 16 15 14 19 19 N 1.31632 * 119.99532 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00088 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.46909 * 90.00598 * 20 18 16 22 22 H 1.48503 * 109.46827 * 210.00145 * 20 18 16 23 23 H 1.48492 * 109.47474 * 330.00042 * 20 18 16 24 24 C 1.33388 * 114.91925 * 0.24683 * 4 3 2 25 25 S 1.75884 * 125.20671 * 180.02562 * 2 1 3 26 26 H 1.08997 * 109.47107 * 90.00204 * 1 2 3 27 27 H 1.09005 * 109.46713 * 209.99619 * 1 2 3 28 28 H 1.08996 * 109.47170 * 329.99224 * 1 2 3 29 29 H 1.07998 * 122.54253 * 0.02562 * 3 2 1 30 30 H 1.09001 * 109.47558 * 330.00258 * 5 4 3 31 31 H 1.08998 * 109.47216 * 209.99921 * 5 4 3 32 32 H 1.00901 * 110.99869 * 56.04737 * 6 5 4 33 33 H 1.09004 * 109.47031 * 299.99620 * 7 6 5 34 34 H 1.08995 * 109.47111 * 59.99900 * 7 6 5 35 35 H 1.08995 * 109.46615 * 299.99641 * 8 7 6 36 36 H 1.08996 * 109.46939 * 60.00272 * 8 7 6 37 37 H 1.08993 * 109.47740 * 299.99810 * 9 8 7 38 38 H 1.09005 * 109.47573 * 59.99976 * 9 8 7 39 39 H 1.08996 * 109.47449 * 89.99787 * 11 10 9 40 40 H 1.09000 * 109.47129 * 210.00406 * 11 10 9 41 41 H 1.08997 * 109.46927 * 329.99946 * 11 10 9 42 42 H 1.08999 * 109.47164 * 299.99591 * 14 12 10 43 43 H 1.09001 * 109.47550 * 59.99679 * 14 12 10 44 44 H 0.97001 * 119.99671 * 179.97438 * 19 18 16 45 45 H 1.07999 * 125.20151 * 179.75071 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6380 0.8430 -0.0006 5 6 4.6622 1.9484 -0.0012 6 7 4.9956 2.3078 1.3836 7 6 5.9933 3.3854 1.4221 8 6 6.3148 3.7309 2.8776 9 6 7.3543 4.8528 2.9176 10 7 7.6617 5.1841 4.3112 11 6 8.7461 4.4874 5.0077 12 6 6.9469 6.1297 4.9526 13 8 6.0494 6.7068 4.3758 14 6 7.2635 6.4709 6.3858 15 16 6.1386 7.7675 6.9601 16 6 6.7170 7.9644 8.6128 17 1 7.5388 7.3632 8.9726 18 6 6.1163 8.8923 9.4523 19 7 6.5480 9.0390 10.6871 20 14 4.6953 9.9328 8.8297 21 1 3.4139 9.2315 9.0973 22 1 4.6978 11.2430 9.5286 23 1 4.8444 10.1510 7.3685 24 6 3.9751 -0.4476 -0.0062 25 16 2.5210 -1.4371 -0.0006 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.8668 2.0895 0.0004 30 1 4.2561 2.8198 -0.5150 31 1 5.5617 1.6099 -0.5154 32 1 5.3138 1.5014 1.8999 33 1 6.9022 3.0573 0.9177 34 1 5.5960 4.2665 0.9184 35 1 5.4061 4.0589 3.3823 36 1 6.7123 2.8496 3.3809 37 1 8.2629 4.5246 2.4130 38 1 6.9573 5.7343 2.4141 39 1 9.6793 5.0317 4.8634 40 1 8.5181 4.4328 6.0722 41 1 8.8475 3.4794 4.6056 42 1 7.1417 5.5829 7.0061 43 1 8.2919 6.8251 6.4565 44 1 6.1284 9.6877 11.2737 45 1 4.9863 -0.8268 -0.0114 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498516694.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:00:16 Heat of formation + Delta-G solvation = -31.889875 kcal Electronic energy + Delta-G solvation = -23520.405562 eV Core-core repulsion = 19982.588529 eV Total energy + Delta-G solvation = -3537.817033 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.118 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.88734 -39.58672 -37.54958 -36.40403 -34.67575 -33.77552 -32.41813 -30.59898 -28.21295 -27.86171 -27.58271 -26.97103 -24.83275 -22.61170 -22.23746 -20.65844 -19.84113 -19.55059 -18.20560 -18.10253 -17.33393 -17.07787 -16.83484 -16.55496 -16.18687 -15.88334 -15.60276 -15.07582 -14.92803 -14.73597 -14.63363 -14.33181 -14.19097 -14.06874 -13.60819 -13.51807 -13.37486 -13.30278 -13.15667 -13.03799 -12.97100 -12.77943 -12.70004 -12.55624 -12.41855 -12.24203 -11.87247 -11.66695 -11.59382 -11.17542 -10.92335 -10.52728 -9.71301 -9.54937 -9.42236 -9.22753 -9.00776 -8.52002 -6.22893 0.05668 0.71542 0.98044 1.05264 1.30910 1.46114 1.53332 1.54981 1.70895 2.12108 2.24897 2.68778 2.86140 3.33453 3.61163 3.81457 3.99672 4.09949 4.10954 4.17654 4.27751 4.34714 4.37409 4.39428 4.44722 4.49010 4.56367 4.63058 4.64348 4.68065 4.71071 4.79268 4.82631 4.94524 5.08267 5.17555 5.22321 5.23867 5.47114 5.58204 5.60004 5.70421 6.04081 6.10674 6.25404 6.43220 6.93260 7.11168 8.60285 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.014677 B = 0.001731 C = 0.001615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1907.350779 B =16176.350039 C =17338.309841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.188 4.188 3 C -0.142 4.142 4 C -0.102 4.102 5 C 0.123 3.877 6 N -0.699 5.699 7 C 0.071 3.929 8 C -0.122 4.122 9 C 0.118 3.882 10 N -0.610 5.610 11 C 0.070 3.930 12 C 0.529 3.471 13 O -0.562 6.562 14 C -0.106 4.106 15 S -0.180 6.180 16 C -0.528 4.528 17 H 0.063 0.937 18 C 0.046 3.954 19 N -0.915 5.915 20 Si 0.914 3.086 21 H -0.263 1.263 22 H -0.258 1.258 23 H -0.238 1.238 24 C -0.215 4.215 25 S 0.093 5.907 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.138 0.862 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.345 0.655 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.038 0.962 36 H 0.076 0.924 37 H 0.114 0.886 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.102 0.898 42 H 0.110 0.890 43 H 0.111 0.889 44 H 0.277 0.723 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.399 -23.270 -26.202 35.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.305 4.305 3 C -0.172 4.172 4 C -0.115 4.115 5 C -0.008 4.008 6 N -0.331 5.331 7 C -0.058 4.058 8 C -0.161 4.161 9 C -0.005 4.005 10 N -0.344 5.344 11 C -0.072 4.072 12 C 0.316 3.684 13 O -0.440 6.440 14 C -0.257 4.257 15 S 0.047 5.953 16 C -0.675 4.675 17 H 0.081 0.919 18 C -0.159 4.159 19 N -0.553 5.553 20 Si 0.736 3.264 21 H -0.188 1.188 22 H -0.182 1.182 23 H -0.162 1.162 24 C -0.351 4.351 25 S 0.357 5.643 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.156 0.844 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.164 0.836 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.095 0.905 37 H 0.132 0.868 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.128 0.872 43 H 0.129 0.871 44 H 0.086 0.914 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -3.505 -23.498 -26.812 35.823 hybrid contribution 1.589 0.992 1.031 2.138 sum -1.916 -22.506 -25.781 34.276 Atomic orbital electron populations 1.20425 0.86529 1.03778 1.03570 1.24799 1.01141 0.95605 1.08966 1.20129 0.92872 0.99672 1.04525 1.18892 0.94732 0.94331 1.03520 1.20541 0.95399 0.95275 0.89587 1.60366 1.46248 1.12938 1.13517 1.21782 0.93729 0.94683 0.95640 1.21785 0.98544 0.98664 0.97131 1.21526 0.99930 0.98103 0.80897 1.47856 1.34839 1.37872 1.13799 1.22110 0.88805 0.98408 0.97903 1.20053 0.81416 0.79373 0.87555 1.90678 1.32116 1.52981 1.68270 1.23288 1.03937 1.02306 0.96131 1.84737 1.48328 1.49129 1.13131 1.22441 1.21884 1.26585 0.96632 0.91908 1.25551 0.99087 0.97063 0.94236 1.70014 1.42675 1.35885 1.06763 0.85877 0.79889 0.79451 0.81221 1.18756 1.18195 1.16201 1.25664 1.02679 0.95964 1.10840 1.84188 0.97010 1.09610 1.73490 0.89651 0.90644 0.90131 0.84447 0.90403 0.92825 0.83621 0.92673 0.91616 0.94309 0.90547 0.86827 0.91836 0.90904 0.91083 0.87939 0.87195 0.87091 0.91354 0.80358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.38 71.24 0.74 -0.19 16 2 C -0.19 -2.93 6.51 24.59 0.16 -2.77 16 3 C -0.14 -2.45 9.85 21.22 0.21 -2.25 16 4 C -0.10 -1.61 5.31 -20.92 -0.11 -1.72 16 5 C 0.12 1.73 5.94 85.55 0.51 2.24 16 6 N -0.70 -11.42 6.49 -517.92 -3.36 -14.78 16 7 C 0.07 1.08 5.69 86.30 0.49 1.57 16 8 C -0.12 -2.31 5.80 30.59 0.18 -2.14 16 9 C 0.12 2.32 5.41 86.38 0.47 2.79 16 10 N -0.61 -14.95 2.87 -846.77 -2.43 -17.38 16 11 C 0.07 1.12 10.24 127.77 1.31 2.42 16 12 C 0.53 18.95 7.69 87.65 0.67 19.62 16 13 O -0.56 -24.83 15.44 -3.05 -0.05 -24.88 16 14 C -0.11 -4.11 4.71 71.23 0.34 -3.78 16 15 S -0.18 -9.30 18.55 -56.49 -1.05 -10.35 16 16 C -0.53 -31.07 10.04 67.95 0.68 -30.39 16 17 H 0.06 3.88 8.03 -2.91 -0.02 3.86 16 18 C 0.05 2.73 5.50 84.86 0.47 3.20 16 19 N -0.92 -55.99 13.97 21.65 0.30 -55.69 16 20 Si 0.91 45.59 27.74 68.60 1.90 47.50 16 21 H -0.26 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.26 -12.00 7.11 99.48 0.71 -11.30 16 23 H -0.24 -11.91 6.74 99.48 0.67 -11.24 16 24 C -0.22 -2.95 10.98 66.72 0.73 -2.22 16 25 S 0.09 1.31 23.33 -56.49 -1.32 -0.01 16 26 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 27 H 0.07 0.71 8.14 -2.38 -0.02 0.70 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.14 2.33 8.06 -2.91 -0.02 2.31 16 30 H 0.08 1.15 8.13 -2.39 -0.02 1.14 16 31 H 0.05 0.58 8.12 -2.39 -0.02 0.56 16 32 H 0.35 5.05 8.72 -89.69 -0.78 4.27 16 33 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.11 1.35 8.07 -2.39 -0.02 1.33 16 38 H 0.06 1.56 7.42 -2.38 -0.02 1.55 16 39 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 40 H 0.07 1.25 6.44 -2.39 -0.02 1.24 16 41 H 0.10 1.00 8.07 -2.39 -0.02 0.98 16 42 H 0.11 3.95 7.40 -2.40 -0.02 3.94 16 43 H 0.11 3.97 8.11 -2.40 -0.02 3.95 16 44 H 0.28 15.66 8.31 -92.71 -0.77 14.89 16 45 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 Total: -1.00 -76.09 401.45 1.00 -75.09 By element: Atomic # 1 Polarization: 13.95 SS G_CDS: 0.16 Total: 14.11 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 6.84 Total: -13.61 kcal Atomic # 7 Polarization: -82.36 SS G_CDS: -5.49 Total: -87.85 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.05 Total: -24.88 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.90 Total: 47.50 kcal Atomic # 16 Polarization: -7.99 SS G_CDS: -2.37 Total: -10.36 kcal Total: -76.09 1.00 -75.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498516694.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.200 kcal (2) G-P(sol) polarization free energy of solvation -76.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds