Wall clock time and date at job start Wed Apr 1 2020 00:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86803 * 119.99927 * 2 1 4 4 H 1.48506 * 109.46827 * 269.99985 * 3 2 1 5 5 H 1.48495 * 109.47192 * 29.99811 * 3 2 1 6 6 H 1.48493 * 109.47084 * 149.99907 * 3 2 1 7 7 C 1.38795 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99951 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00091 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99911 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47017 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00133 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00028 * 179.97438 * 11 10 9 14 14 C 1.46502 * 119.99947 * 179.97438 * 13 11 10 15 15 C 1.53004 * 109.46925 * 180.02562 * 14 13 11 16 16 H 1.08995 * 109.47216 * 295.00133 * 15 14 13 17 17 C 1.52999 * 109.47083 * 175.00128 * 15 14 13 18 18 O 1.42898 * 109.47018 * 305.00136 * 17 15 14 19 19 N 1.46498 * 109.47065 * 55.00022 * 15 14 13 20 20 C 1.34777 * 119.99828 * 204.72115 * 19 15 14 21 21 O 1.21283 * 120.00222 * 0.28168 * 20 19 15 22 22 C 1.50703 * 120.00290 * 180.27728 * 20 19 15 23 23 C 1.50701 * 109.47355 * 180.02562 * 22 20 19 24 24 N 1.30492 * 125.64939 * 305.02343 * 23 22 20 25 25 C 1.34130 * 109.25533 * 179.97438 * 24 23 22 26 26 C 1.34675 * 108.01737 * 0.02562 * 25 24 23 27 27 N 1.35038 * 125.64629 * 124.71930 * 23 22 20 28 28 H 0.97001 * 126.40255 * 0.02562 * 27 23 22 29 29 H 0.97002 * 120.00285 * 0.02562 * 1 2 3 30 30 H 1.08992 * 109.47492 * 60.00212 * 10 9 7 31 31 H 1.08999 * 109.47004 * 299.99759 * 10 9 7 32 32 H 0.96997 * 119.99994 * 0.02562 * 13 11 10 33 33 H 1.08997 * 109.46993 * 60.00870 * 14 13 11 34 34 H 1.08999 * 109.47017 * 300.00291 * 14 13 11 35 35 H 1.09003 * 109.47083 * 65.00130 * 17 15 14 36 36 H 1.08995 * 109.47300 * 184.99893 * 17 15 14 37 37 H 0.96709 * 114.00043 * 179.97438 * 18 17 15 38 38 H 0.97001 * 120.00384 * 25.00562 * 19 15 14 39 39 H 1.08998 * 109.46954 * 300.00581 * 22 20 19 40 40 H 1.09002 * 109.46946 * 59.99717 * 22 20 19 41 41 H 1.08002 * 125.99234 * 180.02562 * 25 24 23 42 42 H 1.08001 * 126.58421 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4002 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7911 -5.5023 -0.0011 13 7 2.8441 -6.3431 -0.0018 14 6 2.3303 -7.7151 -0.0019 15 6 3.5024 -8.6985 -0.0020 16 1 4.0599 -8.5993 -0.9333 17 6 2.9695 -10.1272 0.1237 18 8 2.1423 -10.2266 1.2847 19 7 4.3858 -8.4056 1.1294 20 6 5.6846 -8.7623 1.0803 21 8 6.1232 -9.3212 0.0973 22 6 6.5919 -8.4666 2.2466 23 6 7.9816 -8.9626 1.9404 24 7 8.2948 -10.1805 1.5918 25 6 9.6199 -10.2585 1.3991 26 6 10.1479 -9.0428 1.6379 27 7 9.1083 -8.2190 1.9757 28 1 9.1698 -7.2775 2.2010 29 1 -0.4851 0.8400 -0.0004 30 1 3.1244 -3.7314 0.8894 31 1 3.1244 -3.7313 -0.8905 32 1 3.8008 -6.1835 -0.0015 33 1 1.7214 -7.8750 -0.8916 34 1 1.7221 -7.8753 0.8884 35 1 2.3843 -10.3758 -0.7617 36 1 3.8058 -10.8204 0.2129 37 1 1.7687 -11.1071 1.4272 38 1 4.0351 -7.9586 1.9156 39 1 6.6206 -7.3910 2.4210 40 1 6.2143 -8.9690 3.1372 41 1 10.1675 -11.1414 1.1041 42 1 11.1906 -8.7695 1.5714 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001510852554.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:44 Heat of formation + Delta-G solvation = -98.519589 kcal Electronic energy + Delta-G solvation = -26429.175087 eV Core-core repulsion = 22342.175558 eV Total energy + Delta-G solvation = -4086.999529 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.94502 -41.11462 -40.31815 -38.26245 -36.36881 -34.69825 -34.56318 -33.42975 -33.15434 -31.66780 -30.27868 -28.16048 -27.68877 -26.40989 -23.17784 -22.45167 -21.80779 -21.66576 -21.18308 -19.85962 -18.93260 -18.65894 -18.09649 -17.69588 -17.60562 -16.86889 -16.70866 -16.48943 -16.35129 -15.85860 -15.68802 -15.18065 -15.03771 -14.84950 -14.73443 -14.64678 -14.44284 -14.32198 -14.00194 -13.79466 -13.32288 -13.21598 -13.15155 -12.89539 -12.84702 -12.61460 -12.35017 -11.71857 -11.13796 -11.13177 -10.97698 -10.96383 -10.88911 -10.80320 -10.25390 -10.16175 -10.12309 -9.32601 -8.64864 -8.33410 -6.11109 1.10517 1.27774 1.43261 1.48074 1.57755 1.62263 1.65227 1.90973 2.23817 2.27272 2.29550 2.50655 3.00835 3.31638 3.33673 3.39814 3.61712 3.93342 3.98020 4.04252 4.09098 4.28257 4.34837 4.41824 4.46918 4.49861 4.52667 4.60562 4.63979 4.71409 4.80956 4.96051 5.17188 5.33986 5.43150 5.44683 5.84667 6.21017 6.45628 6.48725 6.59851 6.87655 7.08050 7.22156 7.23113 7.26057 8.75639 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.011118 B = 0.002305 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2517.781397 B =12143.013207 C =14382.959124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.256 1.256 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.129 4.129 11 C 0.536 3.464 12 O -0.563 6.563 13 N -0.712 5.712 14 C 0.123 3.877 15 C 0.148 3.852 16 H 0.102 0.898 17 C 0.072 3.928 18 O -0.580 6.580 19 N -0.710 5.710 20 C 0.520 3.480 21 O -0.562 6.562 22 C -0.052 4.052 23 C 0.201 3.799 24 N -0.512 5.512 25 C -0.068 4.068 26 C -0.038 4.038 27 N -0.555 5.555 28 H 0.435 0.565 29 H 0.271 0.729 30 H 0.114 0.886 31 H 0.107 0.893 32 H 0.413 0.587 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.071 0.929 36 H 0.048 0.952 37 H 0.397 0.603 38 H 0.415 0.585 39 H 0.148 0.852 40 H 0.138 0.862 41 H 0.176 0.824 42 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.717 -19.890 6.100 28.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.180 1.180 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.076 5.924 10 C -0.281 4.281 11 C 0.321 3.679 12 O -0.441 6.441 13 N -0.366 5.366 14 C -0.001 4.001 15 C 0.043 3.957 16 H 0.120 0.880 17 C -0.008 4.008 18 O -0.388 6.388 19 N -0.364 5.364 20 C 0.306 3.694 21 O -0.439 6.439 22 C -0.093 4.093 23 C -0.064 4.064 24 N -0.232 5.232 25 C -0.216 4.216 26 C -0.173 4.173 27 N -0.160 5.160 28 H 0.276 0.724 29 H 0.080 0.920 30 H 0.132 0.868 31 H 0.125 0.875 32 H 0.250 0.750 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.247 0.753 38 H 0.252 0.748 39 H 0.166 0.834 40 H 0.156 0.844 41 H 0.193 0.807 42 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 17.516 -20.616 5.345 27.575 hybrid contribution 2.164 1.661 0.193 2.735 sum 19.680 -18.955 5.538 27.879 Atomic orbital electron populations 1.70184 1.07969 1.28568 1.48063 1.26126 0.95957 1.03328 0.93836 0.84959 0.78266 0.76088 0.78698 1.19518 1.20420 1.18017 1.23197 0.95343 0.91979 1.58715 0.89844 1.85615 1.10538 0.99215 1.97043 1.23367 1.03551 0.94280 1.06857 1.20036 0.86161 0.86578 0.75082 1.90710 1.17385 1.86048 1.49932 1.45682 1.10143 1.04914 1.75851 1.21502 0.95712 0.79259 1.03593 1.21191 0.89871 0.93250 0.91416 0.88007 1.22419 0.93915 0.95346 0.89070 1.86423 1.67940 1.38348 1.46124 1.45850 1.08405 1.61482 1.20649 1.20611 0.82422 0.77727 0.88596 1.90775 1.75869 1.42169 1.35083 1.20062 0.85561 1.05629 0.98071 1.22692 0.90390 0.87798 1.05549 1.70149 1.15484 1.19839 1.17758 1.22749 0.90549 0.99403 1.08880 1.23277 0.95386 0.91309 1.07349 1.43227 1.06654 1.13480 1.52678 0.72388 0.92043 0.86807 0.87478 0.75035 0.90658 0.90492 0.91073 0.93327 0.75265 0.74794 0.83447 0.84382 0.80722 0.77078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.29 13.22 21.65 0.29 -55.00 16 2 C 0.01 0.69 5.49 84.86 0.47 1.15 16 3 Si 1.00 42.67 29.55 68.60 2.03 44.70 16 4 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 5 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 6 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 7 C -0.54 -30.33 9.50 67.95 0.65 -29.68 16 8 H 0.08 4.28 7.80 -2.91 -0.02 4.26 16 9 S -0.15 -8.19 20.57 -56.49 -1.16 -9.35 16 10 C -0.13 -4.84 6.16 71.24 0.44 -4.40 16 11 C 0.54 18.58 7.85 87.66 0.69 19.26 16 12 O -0.56 -25.11 15.86 -3.03 -0.05 -25.16 16 13 N -0.71 -16.27 5.39 -463.06 -2.49 -18.76 16 14 C 0.12 2.55 5.12 86.38 0.44 2.99 16 15 C 0.15 2.43 2.53 44.99 0.11 2.54 16 16 H 0.10 1.83 7.58 -2.39 -0.02 1.81 16 17 C 0.07 1.08 6.84 71.98 0.49 1.58 16 18 O -0.58 -8.55 12.64 -148.98 -1.88 -10.43 16 19 N -0.71 -9.75 4.46 -442.53 -1.98 -11.72 16 20 C 0.52 8.93 7.78 87.66 0.68 9.62 16 21 O -0.56 -15.09 15.22 -3.04 -0.05 -15.14 16 22 C -0.05 -0.56 6.33 29.10 0.18 -0.37 16 23 C 0.20 3.48 6.96 138.13 0.96 4.45 16 24 N -0.51 -12.51 10.58 -188.13 -1.99 -14.50 16 25 C -0.07 -1.31 11.87 83.52 0.99 -0.32 16 26 C -0.04 -0.48 12.04 83.09 1.00 0.52 16 27 N -0.56 -6.32 6.15 -186.28 -1.15 -7.47 16 28 H 0.44 1.70 8.96 -92.71 -0.83 0.87 16 29 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 30 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 31 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 32 H 0.41 7.06 8.14 -92.71 -0.75 6.31 16 33 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 34 H 0.08 1.81 7.39 -2.39 -0.02 1.80 16 35 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.40 2.79 9.12 -74.05 -0.68 2.12 16 38 H 0.42 4.37 8.60 -92.71 -0.80 3.58 16 39 H 0.15 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.14 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.18 2.72 8.06 -2.91 -0.02 2.69 16 42 H 0.21 0.88 8.06 -2.91 -0.02 0.86 16 Total: -1.00 -92.32 382.44 -3.28 -95.59 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -1.95 Total: 19.92 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: 7.11 Total: 7.33 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -7.32 Total: -107.46 kcal Atomic # 8 Polarization: -48.76 SS G_CDS: -1.98 Total: -50.73 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Atomic # 16 Polarization: -8.19 SS G_CDS: -1.16 Total: -9.35 kcal Total: -92.32 -3.28 -95.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001510852554.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.927 kcal (2) G-P(sol) polarization free energy of solvation -92.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds