Wall clock time and date at job start Wed Apr 1 2020 00:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86800 * 119.99885 * 2 1 4 4 H 1.48494 * 109.47417 * 270.00014 * 3 2 1 5 5 H 1.48495 * 109.47080 * 30.00361 * 3 2 1 6 6 H 1.48504 * 109.46898 * 150.00162 * 3 2 1 7 7 C 1.38804 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99738 * 180.02562 * 7 2 1 9 9 S 1.76203 * 119.99651 * 359.97438 * 7 2 1 10 10 C 1.80997 * 99.99721 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47088 * 180.02562 * 10 9 7 12 12 O 1.21272 * 119.99642 * 0.02562 * 11 10 9 13 13 N 1.34776 * 119.99846 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99923 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47226 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.47434 * 64.99688 * 15 14 13 17 17 C 1.52997 * 109.47114 * 184.99495 * 15 14 13 18 18 O 1.42903 * 109.47059 * 55.00009 * 17 15 14 19 19 N 1.46498 * 109.46963 * 304.99288 * 15 14 13 20 20 C 1.34777 * 119.99828 * 154.72290 * 19 15 14 21 21 O 1.21283 * 120.00222 * 0.28168 * 20 19 15 22 22 C 1.50703 * 120.00290 * 180.27728 * 20 19 15 23 23 N 1.46492 * 109.47441 * 180.02562 * 22 20 19 24 24 C 1.36884 * 126.39768 * 89.99641 * 23 22 20 25 25 C 1.34672 * 106.81684 * 180.02562 * 24 23 22 26 26 N 1.34131 * 108.02140 * 0.02562 * 25 24 23 27 27 C 1.30504 * 109.25414 * 359.72624 * 26 25 24 28 28 H 0.97001 * 119.99726 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47716 * 59.99936 * 10 9 7 30 30 H 1.09008 * 109.47216 * 299.99949 * 10 9 7 31 31 H 0.96998 * 119.99957 * 359.97438 * 13 11 10 32 32 H 1.08995 * 109.47176 * 59.99567 * 14 13 11 33 33 H 1.09008 * 109.46559 * 299.99697 * 14 13 11 34 34 H 1.08997 * 109.47241 * 175.00015 * 17 15 14 35 35 H 1.09002 * 109.47280 * 295.00109 * 17 15 14 36 36 H 0.96700 * 113.99965 * 180.02562 * 18 17 15 37 37 H 0.97001 * 120.00384 * 335.00737 * 19 15 14 38 38 H 1.08998 * 109.46954 * 300.00581 * 22 20 19 39 39 H 1.09002 * 109.46946 * 59.99717 * 22 20 19 40 40 H 1.07997 * 126.58945 * 359.97438 * 24 23 22 41 41 H 1.08002 * 125.98785 * 180.02562 * 25 24 23 42 42 H 1.08000 * 125.64775 * 180.29419 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9873 -5.3027 -0.0012 12 8 0.7911 -5.5022 -0.0021 13 7 2.8441 -6.3431 -0.0008 14 6 2.3303 -7.7151 -0.0019 15 6 3.5024 -8.6986 -0.0005 16 1 4.0586 -8.5997 0.9317 17 6 2.9695 -10.1271 -0.1274 18 8 2.1440 -10.2262 -1.2896 19 7 4.3872 -8.4053 -1.1307 20 6 5.6885 -8.7520 -1.0753 21 8 6.1257 -9.3114 -0.0920 22 6 6.6002 -8.4448 -2.2353 23 7 7.9528 -8.9186 -1.9321 24 6 8.4611 -10.1582 -2.2126 25 6 9.7315 -10.1686 -1.7658 26 7 9.9916 -8.9683 -1.2266 27 6 8.9325 -8.2126 -1.3276 28 1 -0.4850 0.8401 0.0004 29 1 3.1245 -3.7314 0.8894 30 1 3.1244 -3.7313 -0.8906 31 1 3.8008 -6.1835 -0.0004 32 1 1.7226 -7.8747 -0.8926 33 1 1.7208 -7.8755 0.8874 34 1 3.8060 -10.8204 -0.2157 35 1 2.3831 -10.3761 0.7571 36 1 1.7706 -11.1066 -1.4329 37 1 4.0376 -7.9579 -1.9171 38 1 6.2317 -8.9467 -3.1298 39 1 6.6215 -7.3683 -2.4054 40 1 7.9427 -10.9718 -2.6981 41 1 10.4202 -10.9981 -1.8302 42 1 8.8522 -7.1922 -0.9829 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001510852579.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:28:09 Heat of formation + Delta-G solvation = -83.652743 kcal Electronic energy + Delta-G solvation = -26498.749694 eV Core-core repulsion = 22412.394840 eV Total energy + Delta-G solvation = -4086.354854 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.98268 -41.19841 -40.38908 -38.35924 -36.43340 -34.96796 -34.74752 -34.56831 -32.03647 -30.57302 -30.30347 -28.42680 -27.69329 -26.44708 -23.25497 -22.27708 -21.94324 -21.75346 -21.48946 -19.88032 -18.96013 -18.63575 -18.13103 -17.76903 -17.58783 -16.87098 -16.72625 -16.55378 -16.36575 -15.95732 -15.60987 -15.28076 -15.08030 -14.88825 -14.78741 -14.67483 -14.55415 -14.34334 -14.10836 -13.94231 -13.42303 -13.30833 -13.15517 -12.96176 -12.88113 -12.62510 -12.40614 -11.72525 -11.53136 -11.13418 -11.06046 -10.96155 -10.94473 -10.48497 -10.28782 -10.25855 -10.16510 -9.41678 -8.65244 -8.33985 -6.11481 1.02805 1.27530 1.41191 1.43070 1.47906 1.57699 1.60621 1.69532 2.14732 2.25020 2.28073 2.31448 3.00437 3.26520 3.32591 3.53228 3.62938 3.81082 3.89828 3.92153 4.02081 4.04033 4.20244 4.25005 4.32911 4.46129 4.52469 4.55930 4.59364 4.65108 4.78116 4.90813 5.25119 5.28912 5.37072 5.43115 5.82936 6.18484 6.20676 6.40260 6.43875 6.84149 7.04598 7.07819 7.15688 7.21475 8.74982 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.011243 B = 0.002314 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2489.822731 B =12097.912843 C =14285.669440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.259 1.259 7 C -0.545 4.545 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.130 4.130 11 C 0.536 3.464 12 O -0.562 6.562 13 N -0.712 5.712 14 C 0.122 3.878 15 C 0.148 3.852 16 H 0.103 0.897 17 C 0.073 3.927 18 O -0.580 6.580 19 N -0.703 5.703 20 C 0.502 3.498 21 O -0.568 6.568 22 C 0.086 3.914 23 N -0.446 5.446 24 C -0.043 4.043 25 C -0.061 4.061 26 N -0.540 5.540 27 C 0.182 3.818 28 H 0.271 0.729 29 H 0.107 0.893 30 H 0.114 0.886 31 H 0.413 0.587 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.398 0.602 37 H 0.418 0.582 38 H 0.156 0.844 39 H 0.159 0.841 40 H 0.199 0.801 41 H 0.178 0.822 42 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.692 -23.363 -6.945 27.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.192 1.192 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.692 4.692 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.281 4.281 11 C 0.322 3.678 12 O -0.440 6.440 13 N -0.367 5.367 14 C -0.002 4.002 15 C 0.042 3.958 16 H 0.121 0.879 17 C -0.007 4.007 18 O -0.389 6.389 19 N -0.357 5.357 20 C 0.288 3.712 21 O -0.446 6.446 22 C -0.040 4.040 23 N -0.128 5.128 24 C -0.176 4.176 25 C -0.207 4.207 26 N -0.259 5.259 27 C -0.100 4.100 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.132 0.868 31 H 0.250 0.750 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.070 0.930 35 H 0.089 0.911 36 H 0.249 0.751 37 H 0.256 0.744 38 H 0.173 0.827 39 H 0.177 0.823 40 H 0.216 0.784 41 H 0.195 0.805 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 12.631 -23.136 -5.972 27.027 hybrid contribution 0.775 0.553 -0.301 0.999 sum 13.406 -22.583 -6.273 27.001 Atomic orbital electron populations 1.70180 1.07941 1.28560 1.48069 1.26111 0.95946 1.03292 0.93838 0.84973 0.78193 0.76150 0.78797 1.19244 1.20529 1.18248 1.23197 0.95341 0.92001 1.58704 0.89856 1.85598 1.10531 0.99213 1.97047 1.23375 1.03559 0.94317 1.06885 1.20019 0.86154 0.86569 0.75039 1.90712 1.17405 1.86036 1.49849 1.45674 1.10130 1.04895 1.75978 1.21516 0.95745 0.79244 1.03690 1.21236 0.89823 0.93441 0.91289 0.87907 1.22402 0.94047 0.95038 0.89164 1.86428 1.68071 1.38488 1.45863 1.45835 1.08039 1.60990 1.20799 1.21202 0.82918 0.78181 0.88948 1.90811 1.76020 1.42957 1.34823 1.22011 0.78459 1.06163 0.97342 1.45152 1.11192 1.11928 1.44529 1.23102 0.96535 0.89697 1.08239 1.22635 0.96677 0.96819 1.04613 1.70239 1.28340 1.04957 1.22335 1.25451 0.83821 1.00601 1.00160 0.92044 0.87500 0.86758 0.75010 0.90356 0.90718 0.92993 0.91148 0.75142 0.74424 0.82691 0.82299 0.78413 0.80487 0.75946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.95 13.22 21.65 0.29 -54.67 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 42.60 29.55 68.60 2.03 44.62 16 4 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 7 C -0.54 -30.11 9.50 67.96 0.65 -29.47 16 8 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 9 S -0.15 -8.06 20.57 -56.49 -1.16 -9.22 16 10 C -0.13 -4.73 6.16 71.24 0.44 -4.29 16 11 C 0.54 17.75 7.85 87.66 0.69 18.44 16 12 O -0.56 -24.25 15.86 -3.00 -0.05 -24.30 16 13 N -0.71 -14.70 5.39 -463.07 -2.50 -17.19 16 14 C 0.12 2.19 5.12 86.38 0.44 2.63 16 15 C 0.15 1.86 2.53 44.99 0.11 1.97 16 16 H 0.10 1.49 7.57 -2.39 -0.02 1.47 16 17 C 0.07 0.80 6.85 71.98 0.49 1.29 16 18 O -0.58 -6.26 12.64 -148.98 -1.88 -8.14 16 19 N -0.70 -6.26 4.46 -442.53 -1.97 -8.23 16 20 C 0.50 5.68 7.87 87.66 0.69 6.37 16 21 O -0.57 -12.11 16.09 -3.04 -0.05 -12.16 16 22 C 0.09 0.43 6.63 85.64 0.57 1.00 16 23 N -0.45 -5.88 2.24 -533.15 -1.19 -7.07 16 24 C -0.04 -0.62 11.58 83.09 0.96 0.34 16 25 C -0.06 -1.19 11.87 83.52 0.99 -0.20 16 26 N -0.54 -12.81 11.25 -200.30 -2.25 -15.06 16 27 C 0.18 3.21 12.56 180.26 2.26 5.48 16 28 H 0.27 15.18 8.31 -92.71 -0.77 14.40 16 29 H 0.11 3.54 8.14 -2.40 -0.02 3.52 16 30 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 31 H 0.41 6.08 8.14 -92.71 -0.75 5.32 16 32 H 0.08 1.62 7.39 -2.39 -0.02 1.61 16 33 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.63 16 36 H 0.40 1.29 9.12 -74.06 -0.68 0.62 16 37 H 0.42 2.41 8.60 -92.71 -0.80 1.61 16 38 H 0.16 -0.13 8.14 -2.39 -0.02 -0.15 16 39 H 0.16 -0.14 8.14 -2.39 -0.02 -0.16 16 40 H 0.20 1.53 8.06 -2.91 -0.02 1.51 16 41 H 0.18 2.70 8.06 -2.91 -0.02 2.68 16 42 H 0.22 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -91.00 384.71 -1.12 -92.13 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -1.14 Total: 14.55 kcal Atomic # 6 Polarization: -4.01 SS G_CDS: 8.76 Total: 4.75 kcal Atomic # 7 Polarization: -94.59 SS G_CDS: -7.63 Total: -102.23 kcal Atomic # 8 Polarization: -42.62 SS G_CDS: -1.98 Total: -44.60 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: -8.06 SS G_CDS: -1.16 Total: -9.22 kcal Total: -91.00 -1.12 -92.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001510852579.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.476 kcal (2) G-P(sol) polarization free energy of solvation -91.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds