Wall clock time and date at job start Wed Apr 1 2020 00:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86796 * 119.99981 * 2 1 4 4 H 1.48500 * 109.47485 * 240.00326 * 3 2 1 5 5 H 1.48504 * 109.47193 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46930 * 120.00470 * 3 2 1 7 7 C 1.38949 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99908 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00065 * 359.97438 * 7 2 1 10 10 C 1.34773 * 120.00356 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99613 * 0.02562 * 10 9 7 12 12 C 1.50701 * 120.00392 * 179.97438 * 10 9 7 13 13 N 1.46898 * 109.47149 * 180.02562 * 12 10 9 14 14 C 1.46896 * 111.00184 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.47691 * 179.97438 * 14 13 12 16 16 H 1.09008 * 109.46613 * 59.99853 * 15 14 13 17 17 O 1.42902 * 109.47069 * 300.00484 * 15 14 13 18 18 C 1.52996 * 109.47530 * 180.02562 * 15 14 13 19 19 N 1.46498 * 109.47059 * 184.99929 * 18 15 14 20 20 C 1.34777 * 119.99828 * 179.72339 * 19 18 15 21 21 O 1.21283 * 120.00222 * 0.28168 * 20 19 18 22 22 C 1.50703 * 120.00290 * 180.27728 * 20 19 18 23 23 C 1.50701 * 109.47355 * 180.02562 * 22 20 19 24 24 C 1.33638 * 126.03381 * 89.71546 * 23 22 20 25 25 N 1.31784 * 114.49655 * 179.78579 * 24 23 22 26 26 C 1.29027 * 117.12270 * 0.52297 * 25 24 23 27 27 S 1.70974 * 110.16759 * 359.71398 * 26 25 24 28 28 H 0.96997 * 120.00276 * 359.97438 * 1 2 3 29 29 H 0.96997 * 120.00441 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.46978 * 60.00245 * 12 10 9 31 31 H 1.09001 * 109.47129 * 300.00001 * 12 10 9 32 32 H 1.00897 * 111.00140 * 303.95525 * 13 12 10 33 33 H 1.09000 * 109.47356 * 59.99846 * 14 13 12 34 34 H 1.09002 * 109.47612 * 300.00310 * 14 13 12 35 35 H 0.96696 * 113.99765 * 299.99828 * 17 15 14 36 36 H 1.09004 * 109.47066 * 65.00196 * 18 15 14 37 37 H 1.08994 * 109.46974 * 305.00344 * 18 15 14 38 38 H 0.97001 * 120.00384 * 0.02562 * 19 18 15 39 39 H 1.08998 * 109.46954 * 300.00581 * 22 20 19 40 40 H 1.09002 * 109.46946 * 59.99717 * 22 20 19 41 41 H 1.08001 * 122.74832 * 359.97438 * 24 23 22 42 42 H 1.07996 * 124.91330 * 179.67302 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6965 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2437 -4.8629 0.0000 13 7 2.1983 -5.9795 0.0005 14 6 1.4981 -7.2708 0.0017 15 6 2.5230 -8.4069 0.0016 16 1 3.1485 -8.3319 0.8911 17 8 3.3414 -8.3098 -1.1658 18 6 1.7936 -9.7518 0.0022 19 7 2.7704 -10.8369 0.1224 20 6 2.3540 -12.1185 0.1499 21 8 1.1710 -12.3736 0.0700 22 6 3.3583 -13.2345 0.2799 23 6 2.6395 -14.5591 0.2853 24 6 2.3436 -15.2974 -0.7886 25 7 1.7124 -16.4228 -0.5209 26 6 1.4502 -16.6699 0.7180 27 16 2.0341 -15.4040 1.7079 28 1 -0.4850 0.8400 0.0004 29 1 0.3534 -2.3907 -0.0005 30 1 0.6168 -4.9209 -0.8897 31 1 0.6174 -4.9205 0.8903 32 1 2.8332 -5.9128 -0.7808 33 1 0.8729 -7.3459 -0.8880 34 1 0.8734 -7.3447 0.8919 35 1 2.8501 -8.3687 -1.9966 36 1 1.2383 -9.8644 -0.9290 37 1 1.1026 -9.7900 0.8442 38 1 3.7166 -10.6330 0.1866 39 1 4.0502 -13.2005 -0.5616 40 1 3.9128 -13.1178 1.2110 41 1 2.6034 -14.9978 -1.7931 42 1 0.9357 -17.5487 1.0776 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568565267.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:44:43 Heat of formation + Delta-G solvation = -109.797670 kcal Electronic energy + Delta-G solvation = -25465.811780 eV Core-core repulsion = 21378.323197 eV Total energy + Delta-G solvation = -4087.488583 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.08316 -40.33511 -40.13143 -38.96204 -36.30387 -35.65552 -35.26461 -33.84447 -33.26584 -31.37395 -29.22401 -28.18725 -26.56440 -25.52116 -24.31776 -22.72933 -21.72057 -21.10440 -20.91264 -19.91397 -19.13629 -18.34988 -18.16692 -17.45850 -17.30195 -16.99423 -16.50438 -16.35920 -16.26722 -15.96857 -15.69845 -15.45425 -15.17272 -14.97079 -14.85202 -14.39518 -14.36170 -14.17772 -13.84667 -13.68493 -13.45030 -13.19666 -13.12964 -12.91623 -12.69350 -12.43130 -12.14906 -12.12192 -11.97091 -11.50043 -11.28860 -11.01147 -10.63901 -10.33728 -10.21193 -10.13218 -10.01672 -9.86886 -9.32800 -8.46488 -5.95457 -0.26649 0.44086 0.79285 1.40344 1.42409 1.53267 1.59851 1.80886 2.05403 2.18633 2.30680 2.91330 3.20835 3.42902 3.44390 3.51088 3.68662 3.87614 3.92927 4.06545 4.11979 4.17608 4.31873 4.37946 4.44454 4.50780 4.56361 4.57514 4.70882 4.75388 4.77426 5.10275 5.18012 5.37383 5.40849 5.86612 6.08630 6.40698 6.51259 6.60190 6.73912 6.78620 7.12619 7.21695 7.56218 8.11679 8.70558 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.047581 B = 0.001336 C = 0.001325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 588.327174 B =20951.052976 C =21128.706319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.011 4.011 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.337 4.337 8 H 0.079 0.921 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.623 6.623 12 C 0.065 3.935 13 N -0.679 5.679 14 C 0.030 3.970 15 C 0.114 3.886 16 H 0.110 0.890 17 O -0.565 6.565 18 C 0.097 3.903 19 N -0.711 5.711 20 C 0.511 3.489 21 O -0.579 6.579 22 C -0.059 4.059 23 C -0.210 4.210 24 C 0.025 3.975 25 N -0.507 5.507 26 C 0.011 3.989 27 S 0.149 5.851 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.067 0.933 31 H 0.104 0.896 32 H 0.349 0.651 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.386 0.614 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.418 0.582 39 H 0.146 0.854 40 H 0.134 0.866 41 H 0.182 0.818 42 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.918 -31.074 1.663 31.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.211 4.211 3 Si 0.816 3.184 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.197 1.197 7 C -0.466 4.466 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.223 3.777 11 O -0.510 6.510 12 C -0.068 4.068 13 N -0.313 5.313 14 C -0.100 4.100 15 C 0.054 3.946 16 H 0.127 0.873 17 O -0.372 6.372 18 C -0.028 4.028 19 N -0.364 5.364 20 C 0.298 3.702 21 O -0.459 6.459 22 C -0.101 4.101 23 C -0.332 4.332 24 C -0.126 4.126 25 N -0.221 5.221 26 C -0.285 4.285 27 S 0.402 5.598 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.085 0.915 31 H 0.122 0.878 32 H 0.168 0.832 33 H 0.067 0.933 34 H 0.110 0.890 35 H 0.235 0.765 36 H 0.088 0.912 37 H 0.093 0.907 38 H 0.255 0.745 39 H 0.164 0.836 40 H 0.152 0.848 41 H 0.198 0.802 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 3.088 -31.269 3.398 31.604 hybrid contribution -0.634 1.208 -2.142 2.539 sum 2.453 -30.061 1.256 30.187 Atomic orbital electron populations 1.69662 1.06826 1.29375 1.50204 1.26029 0.96531 1.02386 0.96187 0.84992 0.77769 0.76640 0.78960 1.19663 1.19488 1.19747 1.19646 0.92748 0.84096 1.50138 0.90312 1.41926 1.09327 1.04716 1.65033 1.20918 0.88285 0.86233 0.82242 1.90498 1.15893 1.87970 1.56630 1.21543 0.93991 0.88105 1.03129 1.59948 1.18820 1.00520 1.51968 1.22645 0.96054 0.88502 1.02771 1.22005 0.92172 0.90470 0.89946 0.87269 1.86630 1.38157 1.95937 1.16487 1.21913 0.91869 0.86047 1.02964 1.45770 1.11726 1.04781 1.74107 1.20944 0.89573 0.84266 0.75429 1.90740 1.19754 1.84379 1.51033 1.20155 0.96237 0.85107 1.08616 1.25589 1.09039 1.02775 0.95801 1.21940 0.99351 0.90388 1.00901 1.66327 1.15456 1.19979 1.20315 1.28867 1.03977 1.04593 0.91077 1.83915 1.50480 1.14143 1.11256 0.91290 0.76964 0.91535 0.87754 0.83185 0.93283 0.89027 0.76466 0.91155 0.90682 0.74453 0.83650 0.84794 0.80153 0.75896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.32 13.05 21.66 0.28 -49.04 16 2 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 3 Si 0.99 42.65 29.55 68.60 2.03 44.68 16 4 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.34 -19.08 9.68 84.04 0.81 -18.27 16 8 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 9 N -0.57 -29.18 5.29 -306.99 -1.62 -30.80 16 10 C 0.44 20.50 7.82 87.66 0.69 21.18 16 11 O -0.62 -34.45 15.78 -3.08 -0.05 -34.50 16 12 C 0.06 2.12 6.17 85.56 0.53 2.64 16 13 N -0.68 -19.82 6.12 -517.94 -3.17 -23.00 16 14 C 0.03 0.56 5.39 86.30 0.47 1.03 16 15 C 0.11 1.73 3.27 30.59 0.10 1.83 16 16 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 17 O -0.57 -9.24 12.62 -148.98 -1.88 -11.12 16 18 C 0.10 1.32 5.31 86.38 0.46 1.77 16 19 N -0.71 -8.20 5.50 -463.07 -2.55 -10.75 16 20 C 0.51 7.71 7.82 87.66 0.69 8.40 16 21 O -0.58 -14.36 16.03 -3.04 -0.05 -14.41 16 22 C -0.06 -0.49 6.24 29.10 0.18 -0.31 16 23 C -0.21 -2.96 5.09 24.64 0.13 -2.83 16 24 C 0.03 0.42 11.25 83.66 0.94 1.36 16 25 N -0.51 -9.77 10.54 -203.75 -2.15 -11.92 16 26 C 0.01 0.16 12.23 130.65 1.60 1.76 16 27 S 0.15 1.88 23.22 -56.49 -1.31 0.57 16 28 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 29 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 32 H 0.35 11.08 7.82 -89.70 -0.70 10.38 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.39 4.11 9.04 -74.06 -0.67 3.44 16 36 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.42 3.07 8.47 -92.71 -0.79 2.28 16 39 H 0.15 0.40 8.14 -2.39 -0.02 0.39 16 40 H 0.13 0.45 8.14 -2.39 -0.02 0.44 16 41 H 0.18 2.45 8.06 -2.91 -0.02 2.43 16 42 H 0.22 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -80.24 382.90 -5.20 -85.44 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: -1.78 Total: 36.41 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: 7.05 Total: 18.43 kcal Atomic # 7 Polarization: -116.30 SS G_CDS: -9.21 Total: -125.51 kcal Atomic # 8 Polarization: -58.05 SS G_CDS: -1.98 Total: -60.03 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -1.31 Total: 0.57 kcal Total: -80.24 -5.20 -85.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568565267.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.356 kcal (2) G-P(sol) polarization free energy of solvation -80.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds