Wall clock time and date at job start Wed Apr 1 2020 01:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.50703 * 122.53732 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.46745 * 90.00131 * 5 4 3 7 7 C 1.46903 * 110.99638 * 179.97438 * 6 5 4 8 8 H 1.08990 * 109.47155 * 35.00052 * 7 6 5 9 9 C 1.53000 * 109.47233 * 275.00141 * 7 6 5 10 10 C 1.53006 * 109.47161 * 155.00316 * 7 6 5 11 11 H 1.08999 * 109.46836 * 59.99472 * 10 7 6 12 12 C 1.53000 * 109.46904 * 300.00027 * 10 7 6 13 13 N 1.46499 * 109.47253 * 180.02562 * 10 7 6 14 14 C 1.34774 * 119.99944 * 204.99882 * 13 10 7 15 15 O 1.21279 * 120.00273 * 359.97438 * 14 13 10 16 16 C 1.50696 * 119.99718 * 179.97438 * 14 13 10 17 17 S 1.81007 * 109.46971 * 180.02562 * 16 14 13 18 18 C 1.76202 * 99.99859 * 180.02562 * 17 16 14 19 19 H 1.07992 * 120.00055 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99561 * 179.97438 * 18 17 16 21 21 N 1.31634 * 120.00329 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99857 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46985 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47136 * 120.00058 * 22 20 18 25 25 H 1.48498 * 109.47262 * 240.00228 * 22 20 18 26 26 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 27 27 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 28 28 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 31 31 H 1.07996 * 122.54357 * 359.97438 * 3 2 1 32 32 H 1.09004 * 109.46752 * 209.99818 * 5 4 3 33 33 H 1.09001 * 109.47127 * 330.00016 * 5 4 3 34 34 H 1.00901 * 111.00067 * 56.04913 * 6 5 4 35 35 H 1.09003 * 109.47301 * 299.99979 * 9 7 6 36 36 H 1.08998 * 109.47360 * 59.99948 * 9 7 6 37 37 H 1.08996 * 109.47351 * 180.02562 * 9 7 6 38 38 H 1.09008 * 109.47010 * 59.99600 * 12 10 7 39 39 H 1.08992 * 109.47036 * 179.97438 * 12 10 7 40 40 H 1.08998 * 109.46959 * 300.00355 * 12 10 7 41 41 H 0.97006 * 119.99820 * 24.99858 * 13 10 7 42 42 H 1.09002 * 109.47344 * 299.99866 * 16 14 13 43 43 H 1.09001 * 109.47259 * 60.00359 * 16 14 13 44 44 H 0.97002 * 119.99859 * 179.97438 * 21 20 18 45 45 H 1.07996 * 125.20196 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 4.6623 1.9483 0.0012 6 7 4.9945 2.3071 1.3864 7 6 5.9930 3.3839 1.4263 8 1 5.8235 4.0675 0.5945 9 6 7.3957 2.7830 1.3148 10 6 5.8683 4.1465 2.7468 11 1 6.0378 3.4627 3.5786 12 6 4.4656 4.7473 2.8582 13 7 6.8637 5.2207 2.7863 14 6 7.3000 5.6918 3.9713 15 8 6.8683 5.2269 5.0049 16 6 8.3244 6.7964 4.0118 17 16 8.7033 7.2048 5.7340 18 6 9.8894 8.4850 5.4909 19 1 10.1654 8.7825 4.4902 20 6 10.4690 9.1109 6.5858 21 7 10.1330 8.7479 7.8057 22 14 11.7270 10.4676 6.3282 23 1 11.9292 10.6855 4.8733 24 1 11.2366 11.7225 6.9527 25 1 13.0149 10.0738 6.9538 26 6 3.9751 -0.4477 0.0005 27 16 2.5210 -1.4371 0.0077 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.8669 2.0895 -0.0004 32 1 5.5623 1.6099 -0.5123 33 1 4.2567 2.8198 -0.5126 34 1 5.3122 1.5005 1.9027 35 1 7.5652 2.0993 2.1467 36 1 7.4846 2.2397 0.3741 37 1 8.1366 3.5819 1.3449 38 1 3.7247 3.9483 2.8286 39 1 4.3766 5.2902 3.7991 40 1 4.2961 5.4310 2.0264 41 1 7.2087 5.5928 1.9596 42 1 9.2335 6.4675 3.5083 43 1 7.9283 7.6779 3.5077 44 1 10.5384 9.1851 8.5708 45 1 4.9863 -0.8270 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570590231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:27 Heat of formation + Delta-G solvation = -16.223950 kcal Electronic energy + Delta-G solvation = -24017.350516 eV Core-core repulsion = 20480.212809 eV Total energy + Delta-G solvation = -3537.137707 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.65304 -38.91535 -37.28539 -34.51234 -32.62506 -32.41627 -30.91460 -29.71494 -28.40621 -27.08115 -26.03779 -25.47161 -23.57714 -21.77506 -20.93286 -20.22645 -19.26170 -17.86165 -17.51313 -16.47510 -16.35998 -15.50203 -15.32167 -14.98697 -14.80092 -14.71593 -14.27930 -14.06335 -13.80197 -13.74351 -13.60042 -13.17813 -13.12481 -12.97316 -12.75857 -12.58295 -12.36579 -12.20532 -12.09163 -11.80847 -11.77629 -11.66047 -11.28780 -11.06528 -11.03612 -11.00633 -10.77794 -10.68607 -9.78953 -9.33187 -9.06862 -8.98470 -8.90646 -8.77728 -8.56318 -8.20959 -6.48110 -6.20725 -3.90856 0.64324 1.28475 1.64094 2.30785 3.04831 3.15959 3.22056 3.28606 3.33070 3.67327 4.17997 4.21436 4.35631 4.48242 4.62174 4.79096 4.83639 4.90799 5.00520 5.06547 5.10832 5.14472 5.17993 5.19105 5.33923 5.40814 5.46737 5.51574 5.58759 5.64545 5.68779 5.78821 5.89814 5.91949 6.00096 6.05424 6.15066 6.16396 6.18063 6.41958 6.61115 6.80533 7.03875 7.60890 7.77906 8.36471 8.68671 9.24745 10.86729 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.035126 B = 0.001614 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.942037 B =17344.524221 C =17594.581331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.180 4.180 3 C -0.121 4.121 4 C -0.090 4.090 5 C 0.120 3.880 6 N -0.672 5.672 7 C 0.079 3.921 8 H 0.082 0.918 9 C -0.184 4.184 10 C 0.155 3.845 11 H 0.086 0.914 12 C -0.152 4.152 13 N -0.734 5.734 14 C 0.534 3.466 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.535 4.535 19 H 0.073 0.927 20 C 0.073 3.927 21 N -0.867 5.867 22 Si 0.918 3.082 23 H -0.272 1.272 24 H -0.280 1.280 25 H -0.280 1.280 26 C -0.213 4.213 27 S 0.090 5.910 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.140 0.860 32 H 0.040 0.960 33 H 0.082 0.918 34 H 0.345 0.655 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.056 0.944 40 H 0.047 0.953 41 H 0.395 0.605 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.647 -18.639 -21.632 32.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.297 4.297 3 C -0.151 4.151 4 C -0.103 4.103 5 C -0.012 4.012 6 N -0.304 5.304 7 C -0.031 4.031 8 H 0.100 0.900 9 C -0.243 4.243 10 C 0.050 3.950 11 H 0.104 0.896 12 C -0.210 4.210 13 N -0.389 5.389 14 C 0.320 3.680 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.683 4.683 19 H 0.091 0.909 20 C -0.136 4.136 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.206 1.206 26 C -0.349 4.349 27 S 0.354 5.646 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.158 0.842 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.164 0.836 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.075 0.925 40 H 0.066 0.934 41 H 0.228 0.772 42 H 0.106 0.894 43 H 0.107 0.893 44 H 0.077 0.923 45 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -17.174 -20.547 -19.623 33.199 hybrid contribution 2.713 2.568 -2.024 4.249 sum -14.461 -17.980 -21.647 31.638 Atomic orbital electron populations 1.20341 0.87824 1.03295 1.02685 1.24468 0.99993 0.95595 1.09641 1.19950 0.92221 0.99385 1.03578 1.18767 0.94703 0.93741 1.03054 1.20595 0.94953 0.95546 0.90061 1.60423 1.44838 1.12468 1.12624 1.21768 0.89615 0.93649 0.98101 0.89992 1.22501 0.98085 1.02007 1.01667 1.20727 0.88440 0.88775 0.97096 0.89584 1.22034 0.96298 1.01126 1.01538 1.46052 1.44865 1.39401 1.08574 1.20248 0.81723 0.82982 0.83086 1.90700 1.57218 1.58431 1.32693 1.23536 0.99642 0.98868 1.08374 1.85406 1.54096 1.47075 0.96800 1.22915 1.27513 1.22396 0.95502 0.90910 1.24992 0.96895 0.97269 0.94447 1.70032 1.41665 1.40780 0.97800 0.86123 0.80306 0.80716 0.78380 1.19643 1.20570 1.20581 1.25433 1.01858 0.96277 1.11334 1.84262 0.96961 1.09801 1.73584 0.90804 0.90362 0.91360 0.84192 0.94229 0.89950 0.83588 0.92061 0.92791 0.91358 0.90674 0.92497 0.93373 0.77179 0.89381 0.89306 0.92254 0.82175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.38 36.01 0.37 -0.06 16 2 C -0.18 -1.33 6.51 -36.00 -0.23 -1.56 16 3 C -0.12 -0.95 9.85 -41.21 -0.41 -1.35 16 4 C -0.09 -0.68 5.31 -106.24 -0.56 -1.25 16 5 C 0.12 0.82 5.73 -4.98 -0.03 0.79 16 6 N -0.67 -5.30 5.47 -107.99 -0.59 -5.89 16 7 C 0.08 0.66 2.22 -67.71 -0.15 0.51 16 8 H 0.08 0.63 7.80 -51.93 -0.41 0.22 16 9 C -0.18 -1.50 9.00 37.16 0.33 -1.17 16 10 C 0.16 1.83 2.34 -67.93 -0.16 1.67 16 11 H 0.09 1.23 7.58 -51.93 -0.39 0.84 16 12 C -0.15 -1.82 9.33 37.16 0.35 -1.48 16 13 N -0.73 -9.62 4.38 -53.81 -0.24 -9.86 16 14 C 0.53 9.90 7.81 -10.99 -0.09 9.81 16 15 O -0.52 -11.74 15.53 5.56 0.09 -11.66 16 16 C -0.15 -3.09 6.16 36.00 0.22 -2.87 16 17 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 18 C -0.53 -15.30 9.50 30.94 0.29 -15.01 16 19 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 20 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 21 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 22 Si 0.92 21.47 29.55 -169.99 -5.02 16.44 16 23 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C -0.21 -1.54 10.98 29.04 0.32 -1.23 16 27 S 0.09 0.65 23.33 -107.50 -2.51 -1.86 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 32 H 0.04 0.25 7.41 -51.93 -0.38 -0.14 16 33 H 0.08 0.55 8.04 -51.93 -0.42 0.13 16 34 H 0.35 2.76 8.46 -39.29 -0.33 2.42 16 35 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 36 H 0.05 0.38 7.45 -51.93 -0.39 -0.01 16 37 H 0.07 0.60 7.45 -51.93 -0.39 0.21 16 38 H 0.07 0.85 7.60 -51.92 -0.39 0.46 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.39 4.03 8.39 -40.82 -0.34 3.69 16 42 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 43 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 44 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 401.53 15.07 6.05 6.05 Total: -1.00 -33.98 401.53 -10.75 -44.73 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -7.22 Total: 2.61 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 0.16 Total: -11.18 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: -0.09 Total: -41.28 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.00 SS G_CDS: -4.72 Total: -5.72 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.98 -10.75 -44.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570590231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.507 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds