Wall clock time and date at job start Wed Apr 1 2020 01:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33386 * 125.20043 * 2 1 4 4 C 1.38432 * 114.91918 * 179.97438 * 3 2 1 5 5 C 1.50703 * 122.53732 * 180.02562 * 4 3 2 6 6 N 1.46897 * 109.46745 * 90.00131 * 5 4 3 7 7 C 1.46903 * 110.99638 * 179.97438 * 6 5 4 8 8 H 1.08990 * 109.47155 * 35.00052 * 7 6 5 9 9 C 1.53000 * 109.47233 * 275.00141 * 7 6 5 10 10 C 1.53006 * 109.47161 * 155.00316 * 7 6 5 11 11 H 1.08999 * 109.46836 * 59.99472 * 10 7 6 12 12 C 1.53000 * 109.46904 * 300.00027 * 10 7 6 13 13 N 1.46499 * 109.47253 * 180.02562 * 10 7 6 14 14 C 1.34774 * 119.99944 * 204.99882 * 13 10 7 15 15 O 1.21279 * 120.00273 * 359.97438 * 14 13 10 16 16 C 1.50696 * 119.99718 * 179.97438 * 14 13 10 17 17 S 1.81007 * 109.46971 * 180.02562 * 16 14 13 18 18 C 1.76202 * 99.99859 * 180.02562 * 17 16 14 19 19 H 1.07992 * 120.00055 * 359.97438 * 18 17 16 20 20 C 1.38796 * 119.99561 * 179.97438 * 18 17 16 21 21 N 1.31634 * 120.00329 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99857 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46985 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47136 * 120.00058 * 22 20 18 25 25 H 1.48498 * 109.47262 * 240.00228 * 22 20 18 26 26 C 1.33386 * 114.92087 * 0.02562 * 4 3 2 27 27 S 1.75882 * 125.20464 * 179.69172 * 2 1 3 28 28 H 1.09002 * 109.47152 * 90.00037 * 1 2 3 29 29 H 1.09001 * 109.46980 * 330.00137 * 1 2 3 30 30 H 1.09004 * 109.47113 * 210.00118 * 1 2 3 31 31 H 1.07996 * 122.54357 * 359.97438 * 3 2 1 32 32 H 1.09004 * 109.46752 * 209.99818 * 5 4 3 33 33 H 1.09001 * 109.47127 * 330.00016 * 5 4 3 34 34 H 1.00901 * 111.00067 * 56.04913 * 6 5 4 35 35 H 1.09003 * 109.47301 * 299.99979 * 9 7 6 36 36 H 1.08998 * 109.47360 * 59.99948 * 9 7 6 37 37 H 1.08996 * 109.47351 * 180.02562 * 9 7 6 38 38 H 1.09008 * 109.47010 * 59.99600 * 12 10 7 39 39 H 1.08992 * 109.47036 * 179.97438 * 12 10 7 40 40 H 1.08998 * 109.46959 * 300.00355 * 12 10 7 41 41 H 0.97006 * 119.99820 * 24.99858 * 13 10 7 42 42 H 1.09002 * 109.47344 * 299.99866 * 16 14 13 43 43 H 1.09001 * 109.47259 * 60.00359 * 16 14 13 44 44 H 0.97002 * 119.99859 * 179.97438 * 21 20 18 45 45 H 1.07996 * 125.20196 * 180.02562 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8429 0.0006 5 6 4.6623 1.9483 0.0012 6 7 4.9945 2.3071 1.3864 7 6 5.9930 3.3839 1.4263 8 1 5.8235 4.0675 0.5945 9 6 7.3957 2.7830 1.3148 10 6 5.8683 4.1465 2.7468 11 1 6.0378 3.4627 3.5786 12 6 4.4656 4.7473 2.8582 13 7 6.8637 5.2207 2.7863 14 6 7.3000 5.6918 3.9713 15 8 6.8683 5.2269 5.0049 16 6 8.3244 6.7964 4.0118 17 16 8.7033 7.2048 5.7340 18 6 9.8894 8.4850 5.4909 19 1 10.1654 8.7825 4.4902 20 6 10.4690 9.1109 6.5858 21 7 10.1330 8.7479 7.8057 22 14 11.7270 10.4676 6.3282 23 1 11.9292 10.6855 4.8733 24 1 11.2366 11.7225 6.9527 25 1 13.0149 10.0738 6.9538 26 6 3.9751 -0.4477 0.0005 27 16 2.5210 -1.4371 0.0077 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3633 -0.8900 0.5139 31 1 1.8669 2.0895 -0.0004 32 1 5.5623 1.6099 -0.5123 33 1 4.2567 2.8198 -0.5126 34 1 5.3122 1.5005 1.9027 35 1 7.5652 2.0993 2.1467 36 1 7.4846 2.2397 0.3741 37 1 8.1366 3.5819 1.3449 38 1 3.7247 3.9483 2.8286 39 1 4.3766 5.2902 3.7991 40 1 4.2961 5.4310 2.0264 41 1 7.2087 5.5928 1.9596 42 1 9.2335 6.4675 3.5083 43 1 7.9283 7.6779 3.5077 44 1 10.5384 9.1851 8.5708 45 1 4.9863 -0.8270 0.0013 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570590231.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:26 Heat of formation + Delta-G solvation = -38.465742 kcal Electronic energy + Delta-G solvation = -24018.314993 eV Core-core repulsion = 20480.212809 eV Total energy + Delta-G solvation = -3538.102184 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.118 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.87115 -39.62723 -38.19080 -35.52022 -34.57856 -33.32325 -32.04769 -30.43385 -29.80730 -27.65835 -27.56792 -26.62057 -24.50435 -22.33606 -21.86262 -21.53149 -19.88808 -19.73677 -18.12972 -17.86380 -17.43190 -16.87724 -16.39328 -16.22259 -16.16898 -15.79766 -15.32510 -14.96918 -14.78471 -14.65226 -14.48371 -14.35583 -14.09051 -13.79906 -13.71099 -13.48581 -13.30604 -13.15111 -13.08486 -12.90813 -12.73493 -12.64001 -12.59618 -12.48556 -12.33675 -12.18170 -11.73578 -11.64189 -11.49604 -11.15423 -10.89353 -10.25566 -10.11487 -9.50526 -9.38619 -9.18855 -8.65626 -8.34233 -6.12060 0.10347 0.75503 1.10306 1.27870 1.41654 1.47705 1.58491 1.66552 1.75633 2.26291 2.31157 2.99979 3.31146 3.45519 3.67645 3.87443 3.99932 4.05529 4.16345 4.23644 4.32070 4.37502 4.46542 4.51405 4.52535 4.55174 4.64162 4.67918 4.74798 4.82446 4.85575 4.89487 4.99489 5.12063 5.12736 5.24651 5.27252 5.40241 5.42691 5.52675 5.58462 5.63702 6.04961 6.20622 6.39919 6.57083 7.07213 7.31419 8.75231 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.035126 B = 0.001614 C = 0.001591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.942037 B =17344.524221 C =17594.581331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.188 4.188 3 C -0.136 4.136 4 C -0.097 4.097 5 C 0.125 3.875 6 N -0.678 5.678 7 C 0.094 3.906 8 H 0.102 0.898 9 C -0.181 4.181 10 C 0.155 3.845 11 H 0.058 0.942 12 C -0.143 4.143 13 N -0.706 5.706 14 C 0.536 3.464 15 O -0.566 6.566 16 C -0.129 4.129 17 S -0.153 6.153 18 C -0.545 4.545 19 H 0.083 0.917 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.218 4.218 27 S 0.081 5.919 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.145 0.855 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.345 0.655 35 H 0.048 0.952 36 H 0.072 0.928 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.022 0.978 40 H 0.065 0.935 41 H 0.414 0.586 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.271 0.729 45 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.243 -18.221 -24.658 34.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.305 4.305 3 C -0.166 4.166 4 C -0.110 4.110 5 C -0.006 4.006 6 N -0.309 5.309 7 C -0.017 4.017 8 H 0.120 0.880 9 C -0.240 4.240 10 C 0.050 3.950 11 H 0.077 0.923 12 C -0.202 4.202 13 N -0.361 5.361 14 C 0.322 3.678 15 O -0.444 6.444 16 C -0.280 4.280 17 S 0.074 5.926 18 C -0.693 4.693 19 H 0.101 0.899 20 C -0.192 4.192 21 N -0.548 5.548 22 Si 0.821 3.179 23 H -0.180 1.180 24 H -0.200 1.200 25 H -0.199 1.199 26 C -0.355 4.355 27 S 0.345 5.655 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.091 0.909 31 H 0.163 0.837 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.163 0.837 35 H 0.067 0.933 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.041 0.959 40 H 0.084 0.916 41 H 0.251 0.749 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.080 0.920 45 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -16.783 -20.143 -22.721 34.694 hybrid contribution 2.477 2.329 -1.165 3.594 sum -14.306 -17.814 -23.886 33.054 Atomic orbital electron populations 1.20416 0.86562 1.03768 1.03489 1.24787 1.01044 0.95443 1.09185 1.20132 0.92569 0.99780 1.04110 1.18891 0.94851 0.94077 1.03197 1.20588 0.95169 0.95567 0.89242 1.60357 1.44590 1.12398 1.13568 1.21584 0.90075 0.93824 0.96186 0.88045 1.22475 0.97543 1.01782 1.02157 1.20828 0.87749 0.88004 0.98427 0.92349 1.21947 0.96524 1.01332 1.00362 1.45760 1.43933 1.38735 1.07628 1.20009 0.81385 0.82578 0.83876 1.90693 1.58933 1.60002 1.34766 1.23377 1.01269 1.00374 1.03019 1.85606 1.54860 1.47907 1.04224 1.23245 1.27508 1.22405 0.96165 0.89880 1.26133 0.99120 0.99992 0.93948 1.70197 1.43251 1.42440 0.98944 0.84901 0.77041 0.76876 0.79094 1.17976 1.19970 1.19947 1.25649 1.02408 0.96265 1.11144 1.84277 0.97377 1.10172 1.73657 0.89788 0.89819 0.90945 0.83711 0.93120 0.89341 0.83673 0.93333 0.90927 0.91737 0.89894 0.95881 0.91602 0.74878 0.87224 0.87306 0.92024 0.80906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.38 71.24 0.74 -0.03 16 2 C -0.19 -2.57 6.51 24.59 0.16 -2.41 16 3 C -0.14 -1.94 9.85 21.22 0.21 -1.74 16 4 C -0.10 -1.32 5.31 -20.92 -0.11 -1.43 16 5 C 0.12 1.39 5.73 85.56 0.49 1.88 16 6 N -0.68 -9.29 5.47 -495.57 -2.71 -12.00 16 7 C 0.09 1.34 2.22 44.92 0.10 1.44 16 8 H 0.10 1.14 7.80 -2.39 -0.02 1.12 16 9 C -0.18 -2.51 9.00 71.98 0.65 -1.86 16 10 C 0.16 3.48 2.34 44.99 0.11 3.59 16 11 H 0.06 1.69 7.58 -2.39 -0.02 1.67 16 12 C -0.14 -3.31 9.33 71.98 0.67 -2.63 16 13 N -0.71 -17.34 4.38 -442.54 -1.94 -19.28 16 14 C 0.54 19.72 7.81 87.66 0.68 20.40 16 15 O -0.57 -26.55 15.53 -3.03 -0.05 -26.60 16 16 C -0.13 -5.09 6.16 71.23 0.44 -4.65 16 17 S -0.15 -8.56 20.57 -56.49 -1.16 -9.72 16 18 C -0.55 -31.23 9.50 67.95 0.65 -30.59 16 19 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 20 C 0.01 0.72 5.49 84.86 0.47 1.19 16 21 N -0.91 -56.32 13.22 21.65 0.29 -56.04 16 22 Si 1.00 43.68 29.55 68.60 2.03 45.70 16 23 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 24 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 C -0.22 -2.87 10.98 66.72 0.73 -2.13 16 27 S 0.08 1.10 23.33 -56.49 -1.32 -0.21 16 28 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.15 1.84 8.06 -2.91 -0.02 1.81 16 32 H 0.05 0.47 7.41 -2.39 -0.02 0.45 16 33 H 0.09 0.90 8.04 -2.39 -0.02 0.88 16 34 H 0.34 4.98 8.46 -89.69 -0.76 4.22 16 35 H 0.05 0.81 8.13 -2.39 -0.02 0.79 16 36 H 0.07 0.77 7.45 -2.39 -0.02 0.75 16 37 H 0.06 0.95 7.45 -2.39 -0.02 0.93 16 38 H 0.08 1.79 7.60 -2.38 -0.02 1.77 16 39 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.41 7.14 8.39 -92.70 -0.78 6.37 16 42 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 43 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 44 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 45 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -76.36 401.53 0.58 -75.78 By element: Atomic # 1 Polarization: 21.90 SS G_CDS: -0.54 Total: 21.36 kcal Atomic # 6 Polarization: -24.96 SS G_CDS: 5.98 Total: -18.98 kcal Atomic # 7 Polarization: -82.96 SS G_CDS: -4.37 Total: -87.32 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.05 Total: -26.60 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: -7.45 SS G_CDS: -2.48 Total: -9.93 kcal Total: -76.36 0.58 -75.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570590231.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.315 kcal (2) G-P(sol) polarization free energy of solvation -76.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds