Wall clock time and date at job start Wed Apr 1 2020 01:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.33388 * 125.20080 * 2 1 4 4 C 1.38422 * 114.91993 * 180.20755 * 3 2 1 5 5 C 1.50708 * 122.54207 * 179.76172 * 4 3 2 6 6 N 1.46900 * 109.46947 * 269.73612 * 5 4 3 7 7 C 1.46899 * 111.00108 * 179.97438 * 6 5 4 8 8 H 1.09007 * 109.46973 * 35.00255 * 7 6 5 9 9 C 1.53002 * 109.47577 * 275.00585 * 7 6 5 10 10 C 1.52999 * 109.47168 * 154.99638 * 7 6 5 11 11 H 1.09000 * 109.47486 * 295.00719 * 10 7 6 12 12 C 1.53006 * 109.46623 * 55.00548 * 10 7 6 13 13 N 1.46500 * 109.46944 * 175.00288 * 10 7 6 14 14 C 1.34781 * 119.99732 * 155.00564 * 13 10 7 15 15 O 1.21283 * 119.99585 * 359.97438 * 14 13 10 16 16 C 1.50697 * 119.99747 * 179.97438 * 14 13 10 17 17 S 1.81010 * 109.46802 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99832 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99715 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00013 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00139 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99630 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46957 * 89.99891 * 22 20 18 24 24 H 1.48507 * 109.46936 * 209.99484 * 22 20 18 25 25 H 1.48495 * 109.47562 * 329.99429 * 22 20 18 26 26 C 1.33386 * 114.92330 * 359.48989 * 4 3 2 27 27 S 1.75881 * 109.59065 * 0.27164 * 26 4 3 28 28 H 1.09004 * 109.47059 * 180.28743 * 1 2 3 29 29 H 1.09000 * 109.47830 * 300.28694 * 1 2 3 30 30 H 1.08998 * 109.47269 * 60.29147 * 1 2 3 31 31 H 1.08008 * 122.54235 * 359.96867 * 3 2 1 32 32 H 1.08998 * 109.47328 * 149.73480 * 5 4 3 33 33 H 1.09000 * 109.46829 * 29.73125 * 5 4 3 34 34 H 1.00890 * 111.00026 * 303.95250 * 6 5 4 35 35 H 1.08993 * 109.47092 * 180.02562 * 9 7 6 36 36 H 1.09006 * 109.46455 * 299.99344 * 9 7 6 37 37 H 1.08998 * 109.47381 * 59.99081 * 9 7 6 38 38 H 1.09001 * 109.47002 * 179.97438 * 12 10 7 39 39 H 1.08993 * 109.46955 * 300.00075 * 12 10 7 40 40 H 1.09000 * 109.47050 * 59.99904 * 12 10 7 41 41 H 0.96998 * 120.00364 * 335.00076 * 13 10 7 42 42 H 1.08998 * 109.47252 * 299.99651 * 16 14 13 43 43 H 1.09004 * 109.47120 * 60.00384 * 16 14 13 44 44 H 0.96999 * 119.99711 * 180.02562 * 21 20 18 45 45 H 1.08004 * 125.20526 * 180.29085 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2758 1.0900 0.0000 4 6 3.6378 0.8429 -0.0045 5 6 4.6622 1.9483 -0.0106 6 7 4.9946 2.3003 -1.3975 7 6 5.9923 3.3776 -1.4426 8 1 6.6871 3.2644 -0.6103 9 6 5.2866 4.7311 -1.3374 10 6 6.7620 3.3049 -2.7629 11 1 7.3357 2.3788 -2.7985 12 6 5.7746 3.3385 -3.9313 13 7 7.6732 4.4479 -2.8604 14 6 8.7780 4.3653 -3.6279 15 8 9.0181 3.3445 -4.2373 16 6 9.7150 5.5412 -3.7288 17 16 11.0933 5.1221 -4.8247 18 6 12.0031 6.6298 -4.7623 19 1 11.6441 7.4527 -4.1620 20 6 13.1817 6.7595 -5.4838 21 7 13.8617 7.8856 -5.4368 22 14 13.8030 5.3359 -6.5215 23 1 13.2432 5.4419 -7.8929 24 1 15.2859 5.3815 -6.5873 25 1 13.3739 4.0529 -5.9094 26 6 3.9750 -0.4476 0.0025 27 16 2.5210 -1.4371 0.0079 28 1 -0.3633 -1.0277 0.0052 29 1 -0.3635 0.5183 0.8874 30 1 -0.3634 0.5093 -0.8926 31 1 1.8667 2.0896 -0.0005 32 1 5.5621 1.6125 0.5047 33 1 4.2565 2.8224 0.4989 34 1 5.3123 1.4912 -1.9097 35 1 6.0269 5.5303 -1.3713 36 1 4.5919 4.8442 -2.1697 37 1 4.7383 4.7828 -0.3968 38 1 6.3230 3.2871 -4.8719 39 1 5.0967 2.4881 -3.8586 40 1 5.2009 4.2646 -3.8956 41 1 7.4813 5.2641 -2.3728 42 1 9.1782 6.4000 -4.1317 43 1 10.0999 5.7851 -2.7385 44 1 14.6851 7.9764 -5.9413 45 1 4.9863 -0.8269 0.0049 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001570590236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:50 Heat of formation + Delta-G solvation = -12.228974 kcal Electronic energy + Delta-G solvation = -24061.304625 eV Core-core repulsion = 20524.340153 eV Total energy + Delta-G solvation = -3536.964472 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.85479 -38.96179 -37.44208 -34.58114 -32.66112 -32.43972 -31.08047 -29.51486 -28.53764 -27.11091 -26.41619 -25.62061 -24.10905 -21.78109 -20.72293 -19.86846 -19.29462 -18.01596 -17.56920 -16.61928 -16.40589 -15.88097 -15.49350 -15.02979 -14.99224 -14.81636 -14.62982 -14.18616 -13.83864 -13.63039 -13.53730 -13.33729 -13.10790 -12.94906 -12.79530 -12.66565 -12.49100 -12.24108 -12.13762 -12.04202 -11.93108 -11.64917 -11.27321 -11.12009 -11.02462 -11.00881 -10.85188 -10.58589 -9.86065 -9.52284 -9.03135 -8.99586 -8.96788 -8.85556 -8.67485 -8.50323 -6.91988 -6.29210 -4.00907 0.62806 1.27099 1.62113 2.28398 2.75754 2.97373 3.28222 3.33493 3.50234 3.62370 4.01575 4.31397 4.32925 4.43692 4.60081 4.71805 4.74774 4.81812 4.89981 4.97051 5.04482 5.09041 5.09920 5.18363 5.22813 5.29753 5.35926 5.44189 5.48505 5.51695 5.62516 5.74418 5.76213 5.76810 5.90595 6.01078 6.03033 6.04719 6.15150 6.30635 6.54368 6.65383 6.98041 7.61368 7.93862 8.41360 8.49671 9.17039 10.80009 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.031135 B = 0.001687 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.104825 B =16594.860208 C =17020.806747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.181 4.181 3 C -0.122 4.122 4 C -0.090 4.090 5 C 0.117 3.883 6 N -0.672 5.672 7 C 0.077 3.923 8 H 0.051 0.949 9 C -0.144 4.144 10 C 0.143 3.857 11 H 0.084 0.916 12 C -0.157 4.157 13 N -0.731 5.731 14 C 0.532 3.468 15 O -0.519 6.519 16 C -0.124 4.124 17 S -0.142 6.142 18 C -0.522 4.522 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.880 5.880 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.236 1.236 26 C -0.213 4.213 27 S 0.092 5.908 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.140 0.860 32 H 0.040 0.960 33 H 0.083 0.917 34 H 0.345 0.655 35 H 0.057 0.943 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.398 0.602 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.271 0.729 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.498 -14.235 14.533 34.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.298 4.298 3 C -0.152 4.152 4 C -0.103 4.103 5 C -0.014 4.014 6 N -0.305 5.305 7 C -0.033 4.033 8 H 0.069 0.931 9 C -0.202 4.202 10 C 0.038 3.962 11 H 0.102 0.898 12 C -0.215 4.215 13 N -0.387 5.387 14 C 0.318 3.682 15 O -0.394 6.394 16 C -0.275 4.275 17 S 0.085 5.915 18 C -0.669 4.669 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.160 1.160 26 C -0.349 4.349 27 S 0.357 5.643 28 H 0.084 0.916 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.157 0.843 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.164 0.836 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.078 0.922 41 H 0.234 0.766 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.081 0.919 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -27.742 -16.985 13.400 35.181 hybrid contribution 1.281 2.228 0.708 2.666 sum -26.462 -14.757 14.109 33.422 Atomic orbital electron populations 1.20323 0.87854 1.02805 1.03062 1.24472 0.99963 0.95641 1.09710 1.19904 0.92205 0.99366 1.03769 1.18750 0.94665 0.93717 1.03144 1.20642 0.95164 0.95541 0.90028 1.60564 1.44807 1.12310 1.12807 1.21733 0.92047 0.93055 0.96451 0.93110 1.21871 1.00638 0.94951 1.02730 1.20941 0.90344 0.90658 0.94280 0.89800 1.22125 0.98785 1.02588 0.98012 1.46106 1.24507 1.17288 1.50810 1.20283 0.80658 0.89164 0.78119 1.90694 1.73567 1.31304 1.43817 1.23284 0.99865 0.99009 1.05349 1.84787 1.22427 1.23704 1.60615 1.22322 1.10750 0.98730 1.35139 0.89394 1.24710 0.95196 0.95908 0.95468 1.69939 1.16027 1.24833 1.40880 0.86735 0.78901 0.84325 0.81884 1.19200 1.19943 1.15952 1.25463 1.01960 0.96291 1.11189 1.84283 0.96902 1.09750 1.73393 0.91566 0.90585 0.90460 0.84262 0.94177 0.89868 0.83599 0.92432 0.91154 0.92497 0.92260 0.91172 0.92199 0.76568 0.88488 0.88525 0.91948 0.82085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.39 10.38 36.00 0.37 -0.02 16 2 C -0.18 -1.29 6.51 -36.01 -0.23 -1.52 16 3 C -0.12 -0.92 9.85 -41.21 -0.41 -1.33 16 4 C -0.09 -0.68 5.31 -106.25 -0.56 -1.25 16 5 C 0.12 0.83 5.74 -4.97 -0.03 0.80 16 6 N -0.67 -5.17 5.50 -107.99 -0.59 -5.76 16 7 C 0.08 0.64 2.66 -67.71 -0.18 0.46 16 8 H 0.05 0.43 7.80 -51.93 -0.41 0.03 16 9 C -0.14 -1.07 8.93 37.16 0.33 -0.73 16 10 C 0.14 1.56 2.30 -67.93 -0.16 1.41 16 11 H 0.08 1.07 7.58 -51.93 -0.39 0.68 16 12 C -0.16 -1.71 9.02 37.16 0.34 -1.37 16 13 N -0.73 -9.09 4.99 -53.80 -0.27 -9.36 16 14 C 0.53 9.30 7.81 -10.98 -0.09 9.21 16 15 O -0.52 -11.04 15.52 5.56 0.09 -10.96 16 16 C -0.12 -2.39 6.16 36.00 0.22 -2.17 16 17 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 18 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 19 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 20 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 21 N -0.88 -26.55 13.97 55.49 0.78 -25.78 16 22 Si 0.86 21.82 27.74 -169.99 -4.71 17.10 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 25 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 26 C -0.21 -1.59 10.98 29.04 0.32 -1.27 16 27 S 0.09 0.67 23.33 -107.50 -2.51 -1.84 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 32 H 0.04 0.28 8.03 -51.93 -0.42 -0.14 16 33 H 0.08 0.56 7.42 -51.93 -0.39 0.17 16 34 H 0.34 2.74 7.91 -39.30 -0.31 2.43 16 35 H 0.06 0.39 6.29 -51.93 -0.33 0.07 16 36 H 0.07 0.56 6.57 -51.93 -0.34 0.22 16 37 H 0.06 0.39 7.45 -51.93 -0.39 0.00 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.68 7.17 -51.93 -0.37 0.31 16 40 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 41 H 0.40 3.94 6.58 -40.82 -0.27 3.68 16 42 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 43 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 44 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 45 H 0.16 1.00 8.06 -52.48 -0.42 0.57 16 LS Contribution 392.39 15.07 5.91 5.91 Total: -1.00 -33.39 392.39 -10.07 -43.46 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.91 Total: 2.62 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 0.14 Total: -9.81 kcal Atomic # 7 Polarization: -40.82 SS G_CDS: -0.09 Total: -40.91 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Atomic # 16 Polarization: -2.92 SS G_CDS: -4.50 Total: -7.42 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.39 -10.07 -43.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570590236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.231 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds