Wall clock time and date at job start Wed Apr 1 2020 01:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.33388 * 125.20080 * 2 1 4 4 C 1.38422 * 114.91993 * 180.20755 * 3 2 1 5 5 C 1.50708 * 122.54207 * 179.76172 * 4 3 2 6 6 N 1.46900 * 109.46947 * 269.73612 * 5 4 3 7 7 C 1.46899 * 111.00108 * 179.97438 * 6 5 4 8 8 H 1.09007 * 109.46973 * 35.00255 * 7 6 5 9 9 C 1.53002 * 109.47577 * 275.00585 * 7 6 5 10 10 C 1.52999 * 109.47168 * 154.99638 * 7 6 5 11 11 H 1.09000 * 109.47486 * 295.00719 * 10 7 6 12 12 C 1.53006 * 109.46623 * 55.00548 * 10 7 6 13 13 N 1.46500 * 109.46944 * 175.00288 * 10 7 6 14 14 C 1.34781 * 119.99732 * 155.00564 * 13 10 7 15 15 O 1.21283 * 119.99585 * 359.97438 * 14 13 10 16 16 C 1.50697 * 119.99747 * 179.97438 * 14 13 10 17 17 S 1.81010 * 109.46802 * 179.97438 * 16 14 13 18 18 C 1.76205 * 99.99832 * 179.97438 * 17 16 14 19 19 H 1.07995 * 119.99715 * 0.02562 * 18 17 16 20 20 C 1.38798 * 120.00013 * 179.97438 * 18 17 16 21 21 N 1.31629 * 120.00139 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99630 * 0.02562 * 20 18 17 23 23 H 1.48503 * 109.46957 * 89.99891 * 22 20 18 24 24 H 1.48507 * 109.46936 * 209.99484 * 22 20 18 25 25 H 1.48495 * 109.47562 * 329.99429 * 22 20 18 26 26 C 1.33386 * 114.92330 * 359.48989 * 4 3 2 27 27 S 1.75881 * 109.59065 * 0.27164 * 26 4 3 28 28 H 1.09004 * 109.47059 * 180.28743 * 1 2 3 29 29 H 1.09000 * 109.47830 * 300.28694 * 1 2 3 30 30 H 1.08998 * 109.47269 * 60.29147 * 1 2 3 31 31 H 1.08008 * 122.54235 * 359.96867 * 3 2 1 32 32 H 1.08998 * 109.47328 * 149.73480 * 5 4 3 33 33 H 1.09000 * 109.46829 * 29.73125 * 5 4 3 34 34 H 1.00890 * 111.00026 * 303.95250 * 6 5 4 35 35 H 1.08993 * 109.47092 * 180.02562 * 9 7 6 36 36 H 1.09006 * 109.46455 * 299.99344 * 9 7 6 37 37 H 1.08998 * 109.47381 * 59.99081 * 9 7 6 38 38 H 1.09001 * 109.47002 * 179.97438 * 12 10 7 39 39 H 1.08993 * 109.46955 * 300.00075 * 12 10 7 40 40 H 1.09000 * 109.47050 * 59.99904 * 12 10 7 41 41 H 0.96998 * 120.00364 * 335.00076 * 13 10 7 42 42 H 1.08998 * 109.47252 * 299.99651 * 16 14 13 43 43 H 1.09004 * 109.47120 * 60.00384 * 16 14 13 44 44 H 0.96999 * 119.99711 * 180.02562 * 21 20 18 45 45 H 1.08004 * 125.20526 * 180.29085 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2758 1.0900 0.0000 4 6 3.6378 0.8429 -0.0045 5 6 4.6622 1.9483 -0.0106 6 7 4.9946 2.3003 -1.3975 7 6 5.9923 3.3776 -1.4426 8 1 6.6871 3.2644 -0.6103 9 6 5.2866 4.7311 -1.3374 10 6 6.7620 3.3049 -2.7629 11 1 7.3357 2.3788 -2.7985 12 6 5.7746 3.3385 -3.9313 13 7 7.6732 4.4479 -2.8604 14 6 8.7780 4.3653 -3.6279 15 8 9.0181 3.3445 -4.2373 16 6 9.7150 5.5412 -3.7288 17 16 11.0933 5.1221 -4.8247 18 6 12.0031 6.6298 -4.7623 19 1 11.6441 7.4527 -4.1620 20 6 13.1817 6.7595 -5.4838 21 7 13.8617 7.8856 -5.4368 22 14 13.8030 5.3359 -6.5215 23 1 13.2432 5.4419 -7.8929 24 1 15.2859 5.3815 -6.5873 25 1 13.3739 4.0529 -5.9094 26 6 3.9750 -0.4476 0.0025 27 16 2.5210 -1.4371 0.0079 28 1 -0.3633 -1.0277 0.0052 29 1 -0.3635 0.5183 0.8874 30 1 -0.3634 0.5093 -0.8926 31 1 1.8667 2.0896 -0.0005 32 1 5.5621 1.6125 0.5047 33 1 4.2565 2.8224 0.4989 34 1 5.3123 1.4912 -1.9097 35 1 6.0269 5.5303 -1.3713 36 1 4.5919 4.8442 -2.1697 37 1 4.7383 4.7828 -0.3968 38 1 6.3230 3.2871 -4.8719 39 1 5.0967 2.4881 -3.8586 40 1 5.2009 4.2646 -3.8956 41 1 7.4813 5.2641 -2.3728 42 1 9.1782 6.4000 -4.1317 43 1 10.0999 5.7851 -2.7385 44 1 14.6851 7.9764 -5.9413 45 1 4.9863 -0.8269 0.0049 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570590236.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:01:48 Heat of formation + Delta-G solvation = -34.090062 kcal Electronic energy + Delta-G solvation = -24062.252593 eV Core-core repulsion = 20524.340153 eV Total energy + Delta-G solvation = -3537.912440 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.118 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.01001 -39.65036 -38.32987 -35.50077 -34.67335 -33.37929 -32.06525 -30.35785 -29.71621 -27.85166 -27.58423 -27.01528 -24.96674 -22.35075 -21.90577 -20.77100 -19.97707 -19.77020 -18.31327 -17.94992 -17.41107 -17.08891 -16.67956 -16.26404 -16.20277 -15.94157 -15.58307 -15.16470 -14.94458 -14.72806 -14.55664 -14.20002 -14.14413 -13.97763 -13.58460 -13.41307 -13.34964 -13.25449 -13.10246 -13.01333 -12.87287 -12.77705 -12.66077 -12.56034 -12.19583 -11.90356 -11.86501 -11.65094 -11.56148 -11.17357 -10.99552 -10.53711 -10.16061 -9.55072 -9.42632 -9.24453 -8.99677 -8.51729 -6.22453 0.08896 0.74380 0.98503 1.08445 1.31115 1.46274 1.54895 1.56534 1.73868 2.20466 2.25664 2.71389 2.86598 3.33634 3.60426 3.85484 3.88181 3.93429 4.12216 4.21305 4.23771 4.35039 4.41943 4.46407 4.50022 4.54613 4.66383 4.66602 4.76572 4.79276 4.83374 4.90567 5.01501 5.04703 5.12012 5.25327 5.28537 5.47804 5.50986 5.51527 5.62034 5.70588 5.99863 6.11317 6.33710 6.46410 6.93580 7.19582 8.60602 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.031135 B = 0.001687 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.104825 B =16594.860208 C =17020.806747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.185 4.185 3 C -0.136 4.136 4 C -0.095 4.095 5 C 0.121 3.879 6 N -0.672 5.672 7 C 0.089 3.911 8 H 0.053 0.947 9 C -0.143 4.143 10 C 0.144 3.856 11 H 0.066 0.934 12 C -0.149 4.149 13 N -0.706 5.706 14 C 0.537 3.463 15 O -0.561 6.561 16 C -0.112 4.112 17 S -0.176 6.176 18 C -0.530 4.530 19 H 0.063 0.937 20 C 0.046 3.954 21 N -0.916 5.916 22 Si 0.914 3.086 23 H -0.263 1.263 24 H -0.259 1.259 25 H -0.237 1.237 26 C -0.223 4.223 27 S 0.083 5.917 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.148 0.852 32 H 0.042 0.958 33 H 0.090 0.910 34 H 0.343 0.657 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.030 0.970 39 H 0.082 0.918 40 H 0.070 0.930 41 H 0.414 0.586 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.277 0.723 45 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.183 -14.692 15.415 36.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.302 4.302 3 C -0.165 4.165 4 C -0.108 4.108 5 C -0.010 4.010 6 N -0.304 5.304 7 C -0.021 4.021 8 H 0.071 0.929 9 C -0.201 4.201 10 C 0.039 3.961 11 H 0.084 0.916 12 C -0.207 4.207 13 N -0.362 5.362 14 C 0.322 3.678 15 O -0.440 6.440 16 C -0.263 4.263 17 S 0.051 5.949 18 C -0.677 4.677 19 H 0.081 0.919 20 C -0.159 4.159 21 N -0.554 5.554 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.161 1.161 26 C -0.360 4.360 27 S 0.348 5.652 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.165 0.835 32 H 0.060 0.940 33 H 0.108 0.892 34 H 0.162 0.838 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.253 0.747 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.086 0.914 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -29.466 -17.415 14.321 37.102 hybrid contribution 1.641 2.390 0.544 2.950 sum -27.825 -15.024 14.865 34.941 Atomic orbital electron populations 1.20408 0.86382 1.03445 1.03877 1.24809 1.01075 0.95300 1.09016 1.20074 0.92295 0.99909 1.04262 1.18864 0.94936 0.93862 1.03154 1.20631 0.95133 0.95672 0.89514 1.60607 1.44293 1.12169 1.13357 1.21614 0.92028 0.93981 0.94524 0.92876 1.21881 1.00748 0.94255 1.03216 1.21041 0.89919 0.89064 0.96071 0.91593 1.22047 0.98562 1.03749 0.96363 1.45887 1.22875 1.18483 1.48964 1.19950 0.81482 0.87857 0.78501 1.90687 1.74780 1.32534 1.45951 1.23280 0.98005 1.00404 1.04600 1.84717 1.25068 1.22126 1.63017 1.22469 1.11299 0.99480 1.34472 0.91914 1.25549 0.95492 0.98230 0.96629 1.70015 1.16775 1.26600 1.42031 0.85875 0.79106 0.81177 0.80251 1.18736 1.18317 1.16129 1.25643 1.02440 0.96454 1.11429 1.84295 0.97204 1.10234 1.73491 0.91053 0.89496 0.89805 0.83454 0.93962 0.89161 0.83804 0.91724 0.91486 0.91410 0.95110 0.89960 0.91083 0.74669 0.86858 0.86791 0.91378 0.81313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.38 71.23 0.74 0.08 16 2 C -0.18 -2.39 6.51 24.59 0.16 -2.23 16 3 C -0.14 -1.83 9.85 21.22 0.21 -1.63 16 4 C -0.10 -1.31 5.31 -20.92 -0.11 -1.43 16 5 C 0.12 1.46 5.74 85.56 0.49 1.95 16 6 N -0.67 -8.97 5.50 -495.56 -2.73 -11.70 16 7 C 0.09 1.25 2.66 44.92 0.12 1.37 16 8 H 0.05 0.76 7.80 -2.38 -0.02 0.75 16 9 C -0.14 -1.68 8.93 71.98 0.64 -1.04 16 10 C 0.14 2.91 2.30 44.99 0.10 3.01 16 11 H 0.07 1.63 7.58 -2.39 -0.02 1.61 16 12 C -0.15 -3.03 9.02 71.98 0.65 -2.38 16 13 N -0.71 -16.16 4.99 -442.52 -2.21 -18.37 16 14 C 0.54 18.11 7.81 87.66 0.68 18.79 16 15 O -0.56 -23.71 15.52 -3.04 -0.05 -23.75 16 16 C -0.11 -4.16 6.16 71.23 0.44 -3.72 16 17 S -0.18 -8.86 18.55 -56.49 -1.05 -9.91 16 18 C -0.53 -30.79 10.04 67.95 0.68 -30.11 16 19 H 0.06 3.84 8.03 -2.91 -0.02 3.81 16 20 C 0.05 2.73 5.50 84.86 0.47 3.19 16 21 N -0.92 -55.72 13.97 21.65 0.30 -55.42 16 22 Si 0.91 45.06 27.74 68.60 1.90 46.96 16 23 H -0.26 -12.65 7.11 99.48 0.71 -11.95 16 24 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 25 H -0.24 -11.69 6.74 99.48 0.67 -11.02 16 26 C -0.22 -3.11 10.98 66.72 0.73 -2.38 16 27 S 0.08 1.14 23.33 -56.49 -1.32 -0.18 16 28 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 29 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 32 H 0.04 0.50 8.03 -2.39 -0.02 0.48 16 33 H 0.09 0.97 7.42 -2.39 -0.02 0.96 16 34 H 0.34 4.92 7.91 -89.70 -0.71 4.21 16 35 H 0.06 0.67 6.29 -2.39 -0.02 0.65 16 36 H 0.07 0.87 6.57 -2.38 -0.02 0.85 16 37 H 0.07 0.69 7.45 -2.39 -0.02 0.67 16 38 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.08 1.48 7.17 -2.39 -0.02 1.46 16 40 H 0.07 1.29 6.56 -2.39 -0.02 1.27 16 41 H 0.41 6.98 6.58 -92.71 -0.61 6.37 16 42 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 43 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 44 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 45 H 0.17 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -72.18 392.39 0.52 -71.66 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -0.35 Total: 17.23 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 6.01 Total: -16.51 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -4.63 Total: -85.48 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.05 Total: -23.75 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.90 Total: 46.96 kcal Atomic # 16 Polarization: -7.73 SS G_CDS: -2.37 Total: -10.09 kcal Total: -72.18 0.52 -71.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570590236.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.567 kcal (2) G-P(sol) polarization free energy of solvation -72.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds