Wall clock time and date at job start Wed Apr 1 2020 01:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.35836 * 126.46045 * 2 1 4 4 H 0.96996 * 124.92000 * 359.97438 * 3 2 1 5 5 N 1.28459 * 110.16975 * 180.02562 * 3 2 1 6 6 C 1.31933 * 110.20795 * 0.02562 * 5 3 2 7 7 C 1.47528 * 126.45986 * 179.97438 * 6 5 3 8 8 O 1.21593 * 120.00046 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99944 * 359.74786 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27864 * 9 7 6 11 11 C 1.52990 * 109.47304 * 179.97438 * 10 9 7 12 12 C 1.53009 * 109.47205 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.46958 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99769 * 179.97438 * 13 12 11 15 15 O 1.21287 * 120.00123 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99977 * 179.97438 * 14 13 12 17 17 S 1.81005 * 109.47025 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99764 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00105 * 0.02562 * 18 17 16 20 20 C 1.38801 * 119.99768 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00190 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47179 * 89.99507 * 22 20 18 24 24 H 1.48493 * 109.47230 * 210.00027 * 22 20 18 25 25 H 1.48501 * 109.46822 * 330.00111 * 22 20 18 26 26 C 1.35785 * 126.46210 * 180.35325 * 2 1 3 27 27 O 1.36091 * 127.26438 * 359.97438 * 26 2 1 28 28 H 1.09007 * 109.47300 * 89.97130 * 1 2 3 29 29 H 1.08994 * 109.47373 * 209.97005 * 1 2 3 30 30 H 1.08999 * 109.47452 * 329.97451 * 1 2 3 31 31 H 0.97000 * 119.99736 * 0.27136 * 9 7 6 32 32 H 1.08998 * 109.46795 * 299.99885 * 10 9 7 33 33 H 1.09002 * 109.47196 * 59.99076 * 10 9 7 34 34 H 1.09006 * 109.47037 * 299.99466 * 11 10 9 35 35 H 1.08997 * 109.47401 * 59.99831 * 11 10 9 36 36 H 1.08992 * 109.46730 * 299.99570 * 12 11 10 37 37 H 1.08997 * 109.47029 * 59.99665 * 12 11 10 38 38 H 0.97003 * 120.00644 * 359.97438 * 13 12 11 39 39 H 1.08998 * 109.47477 * 300.00192 * 16 14 13 40 40 H 1.08997 * 109.47150 * 60.00298 * 16 14 13 41 41 H 0.96998 * 119.99795 * 180.02562 * 21 20 18 42 42 H 0.96698 * 113.99587 * 270.17161 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3142 1.0925 0.0000 4 1 2.0045 2.0117 -0.0004 5 7 3.5472 0.7321 -0.0005 6 6 3.6373 -0.5841 -0.0015 7 6 4.8810 -1.3777 -0.0028 8 8 4.8270 -2.5924 -0.0041 9 7 6.0769 -0.7563 -0.0084 10 6 7.3119 -1.5443 -0.0159 11 6 8.5177 -0.6026 -0.0217 12 6 9.8075 -1.4257 -0.0290 13 7 10.9621 -0.5240 -0.0352 14 6 12.2116 -1.0291 -0.0416 15 8 12.3801 -2.2302 -0.0427 16 6 13.3993 -0.1016 -0.0486 17 16 14.9251 -1.0753 -0.0554 18 6 16.1165 0.2230 -0.0620 19 1 15.7924 1.2532 -0.0606 20 6 17.4713 -0.0784 -0.0689 21 7 17.8662 -1.3342 -0.0712 22 14 18.7344 1.2978 -0.0766 23 1 19.0764 1.6636 1.3213 24 1 19.9586 0.8422 -0.7828 25 1 18.1720 2.4818 -0.7745 26 6 2.3139 -1.0920 -0.0067 27 8 1.9325 -2.3984 -0.0143 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3634 -0.8902 0.5133 30 1 -0.3634 0.8897 0.5142 31 1 6.1199 0.2128 -0.0075 32 1 7.3464 -2.1739 0.8731 33 1 7.3370 -2.1719 -0.9068 34 1 8.4829 0.0267 -0.9111 35 1 8.4927 0.0252 0.8689 36 1 9.8420 -2.0546 0.8605 37 1 9.8327 -2.0538 -0.9194 38 1 10.8274 0.4367 -0.0346 39 1 13.3647 0.5265 -0.9387 40 1 13.3742 0.5275 0.8412 41 1 18.8130 -1.5448 -0.0757 42 1 1.8201 -2.7803 0.8669 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575711063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:32 Heat of formation + Delta-G solvation = -51.805761 kcal Electronic energy + Delta-G solvation = -25085.727608 eV Core-core repulsion = 21000.753743 eV Total energy + Delta-G solvation = -4084.973865 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.26292 -39.74766 -39.12983 -37.67693 -36.25659 -34.46710 -33.30697 -32.41986 -31.87998 -31.22713 -29.11757 -27.48856 -26.06682 -25.43075 -23.80893 -22.06257 -21.86623 -20.45589 -20.31819 -18.82118 -17.85830 -17.68927 -17.33542 -16.55490 -16.47911 -16.18534 -16.15908 -15.45161 -15.14608 -14.79614 -14.70329 -14.43468 -14.37460 -14.15802 -13.80934 -13.62451 -13.20066 -13.11411 -12.99561 -12.65754 -12.29552 -12.22709 -11.94230 -11.88824 -11.28917 -11.05625 -11.01599 -10.94666 -10.75800 -10.41564 -9.95486 -9.80845 -9.40929 -9.40452 -9.27875 -9.06248 -8.89047 -8.22379 -6.48942 -6.20712 -3.91294 0.97614 1.31647 2.10805 2.66488 2.96611 3.07433 3.11038 3.22977 3.28855 3.33185 3.64800 3.74330 4.02625 4.09974 4.21266 4.38030 4.62263 4.64452 4.70949 4.82586 4.88386 5.10039 5.14422 5.18083 5.19346 5.25692 5.35513 5.50509 5.58405 5.66021 5.81303 5.91330 5.92612 6.03861 6.14552 6.27752 6.60120 7.00029 7.19596 7.27796 7.60312 7.70205 7.85094 8.36032 8.62042 9.24531 10.86748 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.038891 B = 0.001318 C = 0.001277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.796586 B =21234.877410 C =21915.828424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.010 4.010 3 N -0.372 5.372 4 H 0.451 0.549 5 N -0.243 5.243 6 C -0.030 4.030 7 C 0.602 3.398 8 O -0.519 6.519 9 N -0.718 5.718 10 C 0.122 3.878 11 C -0.143 4.143 12 C 0.124 3.876 13 N -0.740 5.740 14 C 0.531 3.469 15 O -0.516 6.516 16 C -0.153 4.153 17 S -0.060 6.060 18 C -0.536 4.536 19 H 0.072 0.928 20 C 0.074 3.926 21 N -0.867 5.867 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.282 1.282 25 H -0.272 1.272 26 C 0.047 3.953 27 O -0.451 6.451 28 H 0.082 0.918 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.406 0.594 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.398 0.602 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.268 0.732 42 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -38.140 8.450 1.812 39.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.136 4.136 3 N -0.090 5.090 4 H 0.297 0.703 5 N -0.081 5.081 6 C -0.191 4.191 7 C 0.385 3.615 8 O -0.392 6.392 9 N -0.370 5.370 10 C -0.002 4.002 11 C -0.181 4.181 12 C 0.000 4.000 13 N -0.395 5.395 14 C 0.317 3.683 15 O -0.390 6.390 16 C -0.304 4.304 17 S 0.166 5.834 18 C -0.684 4.684 19 H 0.091 0.909 20 C -0.135 4.135 21 N -0.503 5.503 22 Si 0.745 3.255 23 H -0.203 1.203 24 H -0.207 1.207 25 H -0.197 1.197 26 C -0.009 4.009 27 O -0.256 6.256 28 H 0.100 0.900 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.241 0.759 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.232 0.768 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -37.039 6.314 1.190 37.592 hybrid contribution -0.075 3.054 0.487 3.093 sum -37.114 9.368 1.677 38.315 Atomic orbital electron populations 1.20313 0.85778 1.04020 1.03756 1.21612 0.95562 0.87321 1.09067 1.43059 1.02787 1.09405 1.53742 0.70325 1.73587 1.01904 1.14075 1.18548 1.22378 0.95437 0.90029 1.11297 1.16747 0.81505 0.86450 0.76780 1.90858 1.86576 1.12602 1.49187 1.45805 1.05211 1.10874 1.75127 1.21291 0.81566 0.93842 1.03478 1.21975 0.93493 0.98966 1.03664 1.21104 0.83341 0.92595 1.03002 1.45963 1.05424 1.09936 1.78146 1.20315 0.83424 0.89394 0.75170 1.90713 1.85379 1.15576 1.47337 1.23530 0.99263 1.02692 1.04919 1.85419 0.91333 1.09900 1.96713 1.22871 0.92831 0.93759 1.58975 0.90935 1.24990 0.97706 0.96322 0.94531 1.70020 1.16340 1.17073 1.46839 0.86167 0.79988 0.81008 0.78331 1.20279 1.20744 1.19715 1.17792 0.88960 0.85239 1.08862 1.84926 1.88689 1.18966 1.33040 0.89975 0.89381 0.90846 0.75851 0.90591 0.90576 0.90393 0.90409 0.91178 0.91176 0.76825 0.89209 0.89221 0.92176 0.75710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.14 10.44 36.00 0.38 0.23 16 2 C -0.01 -0.05 7.27 -81.70 -0.59 -0.64 16 3 N -0.37 -1.65 6.87 33.71 0.23 -1.42 16 4 H 0.45 0.25 8.96 -190.45 -1.71 -1.45 16 5 N -0.24 -1.80 11.91 33.45 0.40 -1.40 16 6 C -0.03 -0.28 7.13 -82.69 -0.59 -0.87 16 7 C 0.60 6.67 7.82 -12.47 -0.10 6.57 16 8 O -0.52 -7.47 16.53 3.10 0.05 -7.42 16 9 N -0.72 -6.07 5.55 -61.36 -0.34 -6.41 16 10 C 0.12 1.03 5.67 -4.05 -0.02 1.00 16 11 C -0.14 -1.02 5.44 -26.73 -0.15 -1.17 16 12 C 0.12 1.36 5.67 -4.04 -0.02 1.34 16 13 N -0.74 -9.48 5.56 -60.29 -0.33 -9.81 16 14 C 0.53 9.87 7.85 -10.99 -0.09 9.78 16 15 O -0.52 -11.82 15.86 5.55 0.09 -11.73 16 16 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 17 S -0.06 -1.64 20.57 -107.50 -2.21 -3.86 16 18 C -0.54 -15.31 9.50 30.94 0.29 -15.01 16 19 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 20 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 21 N -0.87 -26.26 13.22 55.49 0.73 -25.53 16 22 Si 0.92 21.42 29.55 -169.99 -5.02 16.39 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 26 C 0.05 0.40 7.28 -39.12 -0.28 0.12 16 27 O -0.45 -3.85 13.20 -22.21 -0.29 -4.14 16 28 H 0.08 0.13 8.14 -51.92 -0.42 -0.30 16 29 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.07 -0.02 8.14 -51.93 -0.42 -0.44 16 31 H 0.41 2.65 8.19 -40.82 -0.33 2.32 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.40 3.81 8.47 -40.82 -0.35 3.46 16 39 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 40 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.39 1.68 9.07 45.56 0.41 2.09 16 LS Contribution 386.23 15.07 5.82 5.82 Total: -1.00 -40.56 386.23 -8.10 -48.66 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -6.17 Total: 0.34 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -1.05 Total: 0.51 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: 0.69 Total: -44.58 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.15 Total: -23.29 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -40.56 -8.10 -48.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575711063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.148 kcal (2) G-P(sol) polarization free energy of solvation -40.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds