Wall clock time and date at job start Wed Apr 1 2020 01:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.35836 * 126.46045 * 2 1 4 4 H 0.96996 * 124.92000 * 359.97438 * 3 2 1 5 5 N 1.28459 * 110.16975 * 180.02562 * 3 2 1 6 6 C 1.31933 * 110.20795 * 0.02562 * 5 3 2 7 7 C 1.47528 * 126.45986 * 179.97438 * 6 5 3 8 8 O 1.21593 * 120.00046 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99944 * 359.74786 * 7 6 5 10 10 C 1.46499 * 120.00195 * 180.27864 * 9 7 6 11 11 C 1.52990 * 109.47304 * 179.97438 * 10 9 7 12 12 C 1.53009 * 109.47205 * 179.97438 * 11 10 9 13 13 N 1.46499 * 109.46958 * 179.97438 * 12 11 10 14 14 C 1.34776 * 119.99769 * 179.97438 * 13 12 11 15 15 O 1.21287 * 120.00123 * 0.02562 * 14 13 12 16 16 C 1.50701 * 119.99977 * 179.97438 * 14 13 12 17 17 S 1.81005 * 109.47025 * 179.97438 * 16 14 13 18 18 C 1.76202 * 99.99764 * 180.02562 * 17 16 14 19 19 H 1.07997 * 120.00105 * 0.02562 * 18 17 16 20 20 C 1.38801 * 119.99768 * 180.02562 * 18 17 16 21 21 N 1.31634 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00190 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47179 * 89.99507 * 22 20 18 24 24 H 1.48493 * 109.47230 * 210.00027 * 22 20 18 25 25 H 1.48501 * 109.46822 * 330.00111 * 22 20 18 26 26 C 1.35785 * 126.46210 * 180.35325 * 2 1 3 27 27 O 1.36091 * 127.26438 * 359.97438 * 26 2 1 28 28 H 1.09007 * 109.47300 * 89.97130 * 1 2 3 29 29 H 1.08994 * 109.47373 * 209.97005 * 1 2 3 30 30 H 1.08999 * 109.47452 * 329.97451 * 1 2 3 31 31 H 0.97000 * 119.99736 * 0.27136 * 9 7 6 32 32 H 1.08998 * 109.46795 * 299.99885 * 10 9 7 33 33 H 1.09002 * 109.47196 * 59.99076 * 10 9 7 34 34 H 1.09006 * 109.47037 * 299.99466 * 11 10 9 35 35 H 1.08997 * 109.47401 * 59.99831 * 11 10 9 36 36 H 1.08992 * 109.46730 * 299.99570 * 12 11 10 37 37 H 1.08997 * 109.47029 * 59.99665 * 12 11 10 38 38 H 0.97003 * 120.00644 * 359.97438 * 13 12 11 39 39 H 1.08998 * 109.47477 * 300.00192 * 16 14 13 40 40 H 1.08997 * 109.47150 * 60.00298 * 16 14 13 41 41 H 0.96998 * 119.99795 * 180.02562 * 21 20 18 42 42 H 0.96698 * 113.99587 * 270.17161 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3142 1.0925 0.0000 4 1 2.0045 2.0117 -0.0004 5 7 3.5472 0.7321 -0.0005 6 6 3.6373 -0.5841 -0.0015 7 6 4.8810 -1.3777 -0.0028 8 8 4.8270 -2.5924 -0.0041 9 7 6.0769 -0.7563 -0.0084 10 6 7.3119 -1.5443 -0.0159 11 6 8.5177 -0.6026 -0.0217 12 6 9.8075 -1.4257 -0.0290 13 7 10.9621 -0.5240 -0.0352 14 6 12.2116 -1.0291 -0.0416 15 8 12.3801 -2.2302 -0.0427 16 6 13.3993 -0.1016 -0.0486 17 16 14.9251 -1.0753 -0.0554 18 6 16.1165 0.2230 -0.0620 19 1 15.7924 1.2532 -0.0606 20 6 17.4713 -0.0784 -0.0689 21 7 17.8662 -1.3342 -0.0712 22 14 18.7344 1.2978 -0.0766 23 1 19.0764 1.6636 1.3213 24 1 19.9586 0.8422 -0.7828 25 1 18.1720 2.4818 -0.7745 26 6 2.3139 -1.0920 -0.0067 27 8 1.9325 -2.3984 -0.0143 28 1 -0.3634 0.0005 -1.0277 29 1 -0.3634 -0.8902 0.5133 30 1 -0.3634 0.8897 0.5142 31 1 6.1199 0.2128 -0.0075 32 1 7.3464 -2.1739 0.8731 33 1 7.3370 -2.1719 -0.9068 34 1 8.4829 0.0267 -0.9111 35 1 8.4927 0.0252 0.8689 36 1 9.8420 -2.0546 0.8605 37 1 9.8327 -2.0538 -0.9194 38 1 10.8274 0.4367 -0.0346 39 1 13.3647 0.5265 -0.9387 40 1 13.3742 0.5275 0.8412 41 1 18.8130 -1.5448 -0.0757 42 1 1.8201 -2.7803 0.8669 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575711063.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:08:30 Heat of formation + Delta-G solvation = -87.827435 kcal Electronic energy + Delta-G solvation = -25087.289625 eV Core-core repulsion = 21000.753743 eV Total energy + Delta-G solvation = -4086.535882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.76062 -40.69223 -40.41864 -38.23771 -37.20602 -35.54248 -34.57410 -33.79022 -32.68563 -31.95695 -30.48163 -27.85622 -27.68814 -26.83479 -24.57183 -22.82563 -22.37099 -21.72183 -21.18466 -19.80907 -19.32381 -18.25065 -18.04267 -17.63428 -17.48018 -17.21035 -16.89753 -16.87040 -16.59228 -16.27450 -15.75309 -15.40637 -15.19135 -15.01651 -14.74882 -14.62475 -14.35056 -14.09906 -13.75209 -13.35831 -13.32675 -13.21841 -13.15380 -12.88008 -12.74242 -12.62611 -12.58390 -12.09211 -11.72306 -11.60761 -11.18237 -11.13268 -10.95195 -10.53500 -10.25951 -10.14107 -10.09246 -9.76327 -8.65834 -8.33611 -6.11875 0.35509 0.82977 1.27758 1.43517 1.47856 1.57912 1.62778 1.72050 2.01254 2.20918 2.28189 2.38546 3.00700 3.09670 3.33414 3.63361 3.69593 3.83353 3.96233 3.97022 3.98441 4.13209 4.32242 4.41277 4.51932 4.53149 4.57574 4.73766 4.77107 4.82860 4.95713 5.08955 5.09432 5.19505 5.31458 5.42773 5.44132 5.96231 6.20867 6.37737 6.53136 6.71164 6.78544 7.07706 7.10061 7.26893 8.75710 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.038891 B = 0.001318 C = 0.001277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.796586 B =21234.877410 C =21915.828424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.010 3.990 3 N -0.352 5.352 4 H 0.469 0.531 5 N -0.244 5.244 6 C -0.060 4.060 7 C 0.596 3.404 8 O -0.564 6.564 9 N -0.704 5.704 10 C 0.123 3.877 11 C -0.122 4.122 12 C 0.122 3.878 13 N -0.711 5.711 14 C 0.531 3.469 15 O -0.568 6.568 16 C -0.129 4.129 17 S -0.156 6.156 18 C -0.546 4.546 19 H 0.084 0.916 20 C 0.013 3.987 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.268 1.268 24 H -0.279 1.279 25 H -0.257 1.257 26 C 0.013 3.987 27 O -0.469 6.469 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.418 0.582 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.419 0.581 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.271 0.729 42 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -40.066 12.302 1.942 41.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.117 4.117 3 N -0.073 5.073 4 H 0.319 0.681 5 N -0.083 5.083 6 C -0.221 4.221 7 C 0.381 3.619 8 O -0.441 6.441 9 N -0.356 5.356 10 C -0.001 4.001 11 C -0.160 4.160 12 C -0.003 4.003 13 N -0.365 5.365 14 C 0.317 3.683 15 O -0.446 6.446 16 C -0.280 4.280 17 S 0.071 5.929 18 C -0.694 4.694 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.204 1.204 25 H -0.181 1.181 26 C -0.042 4.042 27 O -0.276 6.276 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.120 0.880 31 H 0.255 0.745 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.256 0.744 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.080 0.920 42 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -39.013 10.268 1.328 40.363 hybrid contribution 0.320 1.904 0.457 1.984 sum -38.693 12.172 1.785 40.602 Atomic orbital electron populations 1.20485 0.83058 1.05623 1.04647 1.22007 0.96894 0.86263 1.06487 1.43209 1.01940 1.10370 1.51788 0.68081 1.73511 1.03236 1.12960 1.18583 1.22261 0.95252 0.90885 1.13656 1.17067 0.82566 0.86148 0.76078 1.90820 1.87298 1.14471 1.51504 1.45682 1.04527 1.11394 1.74000 1.21223 0.82152 0.94104 1.02630 1.21793 0.90372 0.98170 1.05659 1.21211 0.84076 0.92827 1.02140 1.45659 1.03929 1.11386 1.75532 1.20103 0.84719 0.88328 0.75143 1.90705 1.86219 1.17522 1.50169 1.23372 0.95740 1.01926 1.06968 1.85628 0.96434 1.13743 1.97062 1.23216 0.93341 0.94005 1.58841 0.89783 1.26134 1.00161 0.99119 0.93716 1.70191 1.16907 1.19728 1.48054 0.84944 0.76638 0.77555 0.78785 1.19298 1.20388 1.18107 1.18152 0.89359 0.85900 1.10825 1.84869 1.88687 1.19603 1.34485 0.89269 0.89032 0.88027 0.74484 0.91428 0.91731 0.88452 0.88294 0.92130 0.92262 0.74355 0.87034 0.86989 0.92019 0.74303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.06 10.44 71.23 0.74 0.68 16 2 C 0.01 0.09 7.27 41.37 0.30 0.39 16 3 N -0.35 -2.31 6.87 -47.27 -0.32 -2.63 16 4 H 0.47 -0.94 8.96 -220.00 -1.97 -2.91 16 5 N -0.24 -3.24 11.91 -48.09 -0.57 -3.81 16 6 C -0.06 -1.14 7.13 42.45 0.30 -0.84 16 7 C 0.60 13.51 7.82 86.69 0.68 14.18 16 8 O -0.56 -17.12 16.53 -1.92 -0.03 -17.15 16 9 N -0.70 -11.39 5.55 -466.29 -2.59 -13.97 16 10 C 0.12 2.00 5.67 86.38 0.49 2.49 16 11 C -0.12 -1.45 5.44 30.59 0.17 -1.28 16 12 C 0.12 2.51 5.67 86.38 0.49 3.00 16 13 N -0.71 -16.64 5.56 -463.05 -2.57 -19.21 16 14 C 0.53 19.34 7.85 87.66 0.69 20.03 16 15 O -0.57 -26.57 15.86 -3.05 -0.05 -26.62 16 16 C -0.13 -5.01 6.16 71.24 0.44 -4.58 16 17 S -0.16 -8.69 20.57 -56.49 -1.16 -9.85 16 18 C -0.55 -31.16 9.50 67.95 0.65 -30.51 16 19 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.76 5.49 84.86 0.47 1.23 16 21 N -0.91 -56.35 13.22 21.65 0.29 -56.07 16 22 Si 1.00 43.50 29.55 68.60 2.03 45.53 16 23 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 24 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 26 C 0.01 0.22 7.28 22.57 0.16 0.39 16 27 O -0.47 -8.29 13.20 -92.49 -1.22 -9.51 16 28 H 0.09 0.03 8.14 -2.38 -0.02 0.01 16 29 H 0.09 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.10 -0.46 8.14 -2.39 -0.02 -0.48 16 31 H 0.42 4.70 8.19 -92.71 -0.76 3.94 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.42 6.44 8.47 -92.71 -0.79 5.65 16 39 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 40 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 41 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 42 H 0.40 3.84 9.07 -74.06 -0.67 3.17 16 Total: -1.00 -92.67 386.23 -3.71 -96.38 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -3.08 Total: 11.75 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 5.57 Total: 5.17 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -5.77 Total: -95.70 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: -1.30 Total: -53.28 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -8.69 SS G_CDS: -1.16 Total: -9.85 kcal Total: -92.67 -3.71 -96.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575711063.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.554 kcal (2) G-P(sol) polarization free energy of solvation -92.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds