Wall clock time and date at job start Wed Apr 1 2020 00:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00212 * 2 1 4 4 H 1.48501 * 109.46922 * 90.00233 * 3 2 1 5 5 H 1.48496 * 109.47354 * 210.00429 * 3 2 1 6 6 H 1.48501 * 109.47428 * 330.00538 * 3 2 1 7 7 C 1.38803 * 119.99752 * 180.28287 * 2 1 3 8 8 H 1.07999 * 120.00074 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99949 * 179.97438 * 7 2 1 10 10 C 1.81000 * 99.99871 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47042 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99649 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00172 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00024 * 179.97438 * 13 11 10 15 15 H 1.09006 * 110.88790 * 31.12806 * 14 13 11 16 16 C 1.55154 * 111.00681 * 267.19933 * 14 13 11 17 17 C 1.54329 * 102.94346 * 206.42496 * 16 14 13 18 18 N 1.47022 * 107.26783 * 22.19270 * 17 16 14 19 19 C 1.34779 * 125.64740 * 181.09302 * 18 17 16 20 20 O 1.21278 * 120.00236 * 179.97438 * 19 18 17 21 21 C 1.50707 * 119.99644 * 359.96322 * 19 18 17 22 22 H 1.08993 * 110.48939 * 319.29627 * 21 19 18 23 23 C 1.54097 * 110.54938 * 82.00022 * 21 19 18 24 24 N 1.47388 * 103.70632 * 118.55482 * 23 21 19 25 25 C 1.33952 * 109.20509 * 0.11472 * 24 23 21 26 26 O 1.21595 * 123.03876 * 179.90018 * 25 24 23 27 27 N 1.33943 * 113.92046 * 359.91926 * 25 24 23 28 28 C 1.47419 * 108.70651 * 1.05803 * 18 17 16 29 29 H 0.97005 * 119.99723 * 359.71791 * 1 2 3 30 30 H 1.09005 * 109.47046 * 299.99880 * 10 9 7 31 31 H 1.09000 * 109.47385 * 60.00042 * 10 9 7 32 32 H 0.96999 * 119.99513 * 0.02562 * 13 11 10 33 33 H 1.08998 * 110.72060 * 324.78683 * 16 14 13 34 34 H 1.09004 * 110.71829 * 88.06227 * 16 14 13 35 35 H 1.09000 * 109.88275 * 262.77903 * 17 16 14 36 36 H 1.08997 * 109.88403 * 141.60959 * 17 16 14 37 37 H 1.09007 * 110.54992 * 237.18591 * 23 21 19 38 38 H 1.08996 * 110.55381 * 359.97438 * 23 21 19 39 39 H 0.96995 * 125.38497 * 180.02562 * 24 23 21 40 40 H 0.97000 * 125.41222 * 179.97438 * 27 25 24 41 41 H 1.08999 * 110.37115 * 217.03035 * 28 18 17 42 42 H 1.08998 * 110.36794 * 94.70965 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 1.4001 5 1 3.5479 1.4401 -0.7001 6 1 1.4479 2.6527 -0.6999 7 6 2.0103 -1.2021 -0.0059 8 1 1.4703 -2.1374 -0.0101 9 16 3.7723 -1.2021 -0.0066 10 6 4.0865 -2.9846 -0.0143 11 6 5.5730 -3.2327 -0.0166 12 8 6.3439 -2.2965 -0.0129 13 7 6.0456 -4.4949 -0.0218 14 6 7.4906 -4.7360 -0.0245 15 1 8.0181 -3.9419 0.5041 16 6 8.0256 -4.8921 -1.4725 17 6 9.2796 -5.7718 -1.2847 18 7 9.1209 -6.4921 -0.0129 19 6 10.0141 -7.3482 0.5218 20 8 9.7775 -7.8878 1.5818 21 6 11.3068 -7.6350 -0.1978 22 1 11.1339 -7.7299 -1.2697 23 6 12.3415 -6.5293 0.0874 24 7 13.4436 -7.2458 0.7539 25 6 13.1307 -8.5447 0.8495 26 8 13.8666 -9.3683 1.3580 27 7 11.9339 -8.8544 0.3339 28 6 7.8234 -6.1223 0.5812 29 1 -0.4850 0.8401 0.0041 30 1 3.6439 -3.4355 0.8740 31 1 3.6432 -3.4279 -0.9060 32 1 5.4289 -5.2436 -0.0244 33 1 7.2923 -5.3955 -2.1024 34 1 8.2942 -3.9221 -1.8911 35 1 10.1702 -5.1445 -1.2467 36 1 9.3596 -6.4835 -2.1063 37 1 12.6843 -6.0768 -0.8432 38 1 11.9203 -5.7725 0.7491 39 1 14.2658 -6.8410 1.0716 40 1 11.5430 -9.7419 0.3139 41 1 7.9088 -6.0520 1.6656 42 1 7.0593 -6.8496 0.3065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576223619.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:53 Heat of formation + Delta-G solvation = -74.299975 kcal Electronic energy + Delta-G solvation = -26560.935039 eV Core-core repulsion = 22474.985751 eV Total energy + Delta-G solvation = -4085.949287 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.88338 -40.42544 -39.34555 -37.77895 -36.64177 -34.45544 -33.53494 -32.49598 -31.63045 -30.15337 -29.69733 -28.06936 -25.68174 -24.97655 -23.38813 -22.29129 -21.82677 -20.77445 -20.08352 -18.37520 -18.28423 -17.91461 -17.21729 -16.80122 -16.49803 -16.42047 -15.91998 -15.34010 -15.15141 -15.02878 -14.88352 -14.59672 -14.41826 -14.05213 -13.87323 -13.81069 -13.55562 -13.29085 -13.14105 -12.85391 -12.81735 -12.61938 -12.22784 -11.85186 -11.33040 -11.31104 -11.06272 -10.87889 -10.70948 -10.67418 -9.94228 -9.92170 -9.71204 -9.45549 -9.32710 -9.19995 -9.05554 -8.58463 -6.99361 -6.34473 -4.07185 1.82163 1.98832 2.34623 2.64637 2.75553 2.76936 3.20137 3.28522 3.38237 3.44560 3.54704 3.60266 3.67364 4.02887 4.14555 4.21324 4.27303 4.50352 4.60166 4.62079 4.68099 4.73472 4.76512 4.93915 5.04559 5.05319 5.15591 5.25255 5.33622 5.50688 5.61242 5.65694 5.71762 5.91652 6.31173 6.45992 6.59705 6.78708 6.84645 7.38524 7.47103 7.88362 8.12045 8.29452 8.36011 9.11382 10.74658 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.038444 B = 0.001749 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.152608 B =16003.845231 C =16270.554150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.235 1.235 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.089 0.911 9 S -0.140 6.140 10 C -0.125 4.125 11 C 0.536 3.464 12 O -0.515 6.515 13 N -0.728 5.728 14 C 0.136 3.864 15 H 0.109 0.891 16 C -0.146 4.146 17 C 0.096 3.904 18 N -0.613 5.613 19 C 0.518 3.482 20 O -0.517 6.517 21 C 0.108 3.892 22 H 0.118 0.882 23 C 0.105 3.895 24 N -0.739 5.739 25 C 0.706 3.294 26 O -0.581 6.581 27 N -0.715 5.715 28 C 0.101 3.899 29 H 0.271 0.729 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.403 0.597 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.434 0.566 40 H 0.435 0.565 41 H 0.089 0.911 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.635 -14.867 -5.863 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.159 1.159 6 H -0.199 1.199 7 C -0.671 4.671 8 H 0.107 0.893 9 S 0.086 5.914 10 C -0.276 4.276 11 C 0.322 3.678 12 O -0.389 6.389 13 N -0.382 5.382 14 C 0.029 3.971 15 H 0.127 0.873 16 C -0.185 4.185 17 C -0.027 4.027 18 N -0.349 5.349 19 C 0.304 3.696 20 O -0.391 6.391 21 C -0.003 4.003 22 H 0.135 0.865 23 C -0.021 4.021 24 N -0.402 5.402 25 C 0.405 3.595 26 O -0.458 6.458 27 N -0.378 5.378 28 C -0.023 4.023 29 H 0.081 0.919 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.237 0.763 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.276 0.724 40 H 0.278 0.722 41 H 0.107 0.893 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 24.053 -13.969 -4.981 28.258 hybrid contribution -1.243 -0.734 -0.018 1.444 sum 22.810 -14.703 -4.999 27.595 Atomic orbital electron populations 1.69939 1.05918 1.27819 1.47847 1.24720 0.94459 0.98981 0.93146 0.86734 0.81849 0.83292 0.79949 1.19203 1.15939 1.19909 1.22304 0.88178 0.97565 1.59018 0.89347 1.84791 1.09435 0.99750 1.97449 1.23285 0.93635 1.04658 1.05996 1.20328 0.90717 0.82041 0.74731 1.90707 1.58723 1.42092 1.47399 1.45804 1.06195 1.08480 1.77738 1.21957 0.82695 0.96684 0.95753 0.87336 1.23117 0.96462 1.00959 0.97960 1.22215 0.99736 0.95218 0.85521 1.48356 1.18975 1.44359 1.23197 1.20442 0.84526 0.78941 0.85716 1.90797 1.77071 1.49565 1.21663 1.21799 0.91726 0.87020 0.99716 0.86478 1.22306 0.86204 0.94007 0.99591 1.45128 1.22028 1.07716 1.65363 1.15847 0.82005 0.83141 0.78501 1.91024 1.53552 1.50854 1.50396 1.44844 1.18429 1.09857 1.64641 1.22428 0.84876 0.95268 0.99697 0.91891 0.88324 0.88300 0.76273 0.89700 0.88774 0.90499 0.90509 0.88283 0.89325 0.72374 0.72236 0.89305 0.90469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.87 13.97 55.49 0.78 -25.09 16 2 C 0.10 2.72 5.50 -17.43 -0.10 2.63 16 3 Si 0.86 21.08 27.74 -169.99 -4.72 16.37 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 5 H -0.24 -5.74 6.73 56.52 0.38 -5.36 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.52 10.04 30.94 0.31 -14.21 16 8 H 0.09 2.56 8.03 -52.49 -0.42 2.14 16 9 S -0.14 -3.36 18.54 -107.50 -1.99 -5.35 16 10 C -0.13 -2.18 6.16 36.01 0.22 -1.95 16 11 C 0.54 8.11 7.85 -10.98 -0.09 8.02 16 12 O -0.52 -9.72 15.50 5.56 0.09 -9.63 16 13 N -0.73 -7.12 5.20 -51.73 -0.27 -7.38 16 14 C 0.14 1.09 3.42 -65.79 -0.23 0.86 16 15 H 0.11 1.08 7.54 -51.93 -0.39 0.69 16 16 C -0.15 -0.82 6.65 -24.90 -0.17 -0.99 16 17 C 0.10 0.32 6.28 -3.06 -0.02 0.30 16 18 N -0.61 -3.63 3.33 -170.52 -0.57 -4.20 16 19 C 0.52 3.92 6.96 -10.98 -0.08 3.85 16 20 O -0.52 -6.35 16.83 5.56 0.09 -6.25 16 21 C 0.11 0.50 3.54 -68.20 -0.24 0.26 16 22 H 0.12 0.17 7.62 -51.93 -0.40 -0.22 16 23 C 0.10 0.35 7.72 -2.98 -0.02 0.33 16 24 N -0.74 -4.49 6.39 -64.47 -0.41 -4.91 16 25 C 0.71 6.98 8.92 -88.40 -0.79 6.19 16 26 O -0.58 -8.38 18.05 5.28 0.10 -8.28 16 27 N -0.72 -5.28 5.62 -59.33 -0.33 -5.62 16 28 C 0.10 0.70 6.55 -2.53 -0.02 0.69 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.10 1.60 8.14 -51.91 -0.42 1.18 16 31 H 0.10 1.58 8.14 -51.92 -0.42 1.15 16 32 H 0.40 2.87 8.57 -40.82 -0.35 2.52 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.08 0.13 8.14 -51.93 -0.42 -0.30 16 36 H 0.08 0.11 7.97 -51.93 -0.41 -0.30 16 37 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 38 H 0.09 0.31 7.72 -51.93 -0.40 -0.09 16 39 H 0.43 1.92 8.96 -40.82 -0.37 1.55 16 40 H 0.43 2.92 8.96 -40.82 -0.37 2.56 16 41 H 0.09 0.76 8.04 -51.93 -0.42 0.34 16 42 H 0.08 0.47 8.00 -51.93 -0.42 0.06 16 LS Contribution 370.28 15.07 5.58 5.58 Total: -1.00 -39.70 370.28 -8.50 -48.19 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.63 Total: 0.61 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: -1.21 Total: 5.97 kcal Atomic # 7 Polarization: -46.39 SS G_CDS: -0.81 Total: -47.20 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: 0.28 Total: -24.17 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.72 Total: 16.37 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -1.99 Total: -5.35 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -39.70 -8.50 -48.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576223619.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.109 kcal (2) G-P(sol) polarization free energy of solvation -39.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds