Wall clock time and date at job start Wed Apr 1 2020 00:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 120.00212 * 2 1 4 4 H 1.48501 * 109.46922 * 90.00233 * 3 2 1 5 5 H 1.48496 * 109.47354 * 210.00429 * 3 2 1 6 6 H 1.48501 * 109.47428 * 330.00538 * 3 2 1 7 7 C 1.38803 * 119.99752 * 180.28287 * 2 1 3 8 8 H 1.07999 * 120.00074 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99949 * 179.97438 * 7 2 1 10 10 C 1.81000 * 99.99871 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47042 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99649 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00172 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00024 * 179.97438 * 13 11 10 15 15 H 1.09006 * 110.88790 * 31.12806 * 14 13 11 16 16 C 1.55154 * 111.00681 * 267.19933 * 14 13 11 17 17 C 1.54329 * 102.94346 * 206.42496 * 16 14 13 18 18 N 1.47022 * 107.26783 * 22.19270 * 17 16 14 19 19 C 1.34779 * 125.64740 * 181.09302 * 18 17 16 20 20 O 1.21278 * 120.00236 * 179.97438 * 19 18 17 21 21 C 1.50707 * 119.99644 * 359.96322 * 19 18 17 22 22 H 1.08993 * 110.48939 * 319.29627 * 21 19 18 23 23 C 1.54097 * 110.54938 * 82.00022 * 21 19 18 24 24 N 1.47388 * 103.70632 * 118.55482 * 23 21 19 25 25 C 1.33952 * 109.20509 * 0.11472 * 24 23 21 26 26 O 1.21595 * 123.03876 * 179.90018 * 25 24 23 27 27 N 1.33943 * 113.92046 * 359.91926 * 25 24 23 28 28 C 1.47419 * 108.70651 * 1.05803 * 18 17 16 29 29 H 0.97005 * 119.99723 * 359.71791 * 1 2 3 30 30 H 1.09005 * 109.47046 * 299.99880 * 10 9 7 31 31 H 1.09000 * 109.47385 * 60.00042 * 10 9 7 32 32 H 0.96999 * 119.99513 * 0.02562 * 13 11 10 33 33 H 1.08998 * 110.72060 * 324.78683 * 16 14 13 34 34 H 1.09004 * 110.71829 * 88.06227 * 16 14 13 35 35 H 1.09000 * 109.88275 * 262.77903 * 17 16 14 36 36 H 1.08997 * 109.88403 * 141.60959 * 17 16 14 37 37 H 1.09007 * 110.54992 * 237.18591 * 23 21 19 38 38 H 1.08996 * 110.55381 * 359.97438 * 23 21 19 39 39 H 0.96995 * 125.38497 * 180.02562 * 24 23 21 40 40 H 0.97000 * 125.41222 * 179.97438 * 27 25 24 41 41 H 1.08999 * 110.37115 * 217.03035 * 28 18 17 42 42 H 1.08998 * 110.36794 * 94.70965 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4979 2.0463 1.4001 5 1 3.5479 1.4401 -0.7001 6 1 1.4479 2.6527 -0.6999 7 6 2.0103 -1.2021 -0.0059 8 1 1.4703 -2.1374 -0.0101 9 16 3.7723 -1.2021 -0.0066 10 6 4.0865 -2.9846 -0.0143 11 6 5.5730 -3.2327 -0.0166 12 8 6.3439 -2.2965 -0.0129 13 7 6.0456 -4.4949 -0.0218 14 6 7.4906 -4.7360 -0.0245 15 1 8.0181 -3.9419 0.5041 16 6 8.0256 -4.8921 -1.4725 17 6 9.2796 -5.7718 -1.2847 18 7 9.1209 -6.4921 -0.0129 19 6 10.0141 -7.3482 0.5218 20 8 9.7775 -7.8878 1.5818 21 6 11.3068 -7.6350 -0.1978 22 1 11.1339 -7.7299 -1.2697 23 6 12.3415 -6.5293 0.0874 24 7 13.4436 -7.2458 0.7539 25 6 13.1307 -8.5447 0.8495 26 8 13.8666 -9.3683 1.3580 27 7 11.9339 -8.8544 0.3339 28 6 7.8234 -6.1223 0.5812 29 1 -0.4850 0.8401 0.0041 30 1 3.6439 -3.4355 0.8740 31 1 3.6432 -3.4279 -0.9060 32 1 5.4289 -5.2436 -0.0244 33 1 7.2923 -5.3955 -2.1024 34 1 8.2942 -3.9221 -1.8911 35 1 10.1702 -5.1445 -1.2467 36 1 9.3596 -6.4835 -2.1063 37 1 12.6843 -6.0768 -0.8432 38 1 11.9203 -5.7725 0.7491 39 1 14.2658 -6.8410 1.0716 40 1 11.5430 -9.7419 0.3139 41 1 7.9088 -6.0520 1.6656 42 1 7.0593 -6.8496 0.3065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576223619.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:52 Heat of formation + Delta-G solvation = -109.801017 kcal Electronic energy + Delta-G solvation = -26562.474479 eV Core-core repulsion = 22474.985751 eV Total energy + Delta-G solvation = -4087.488728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.42327 -41.16403 -40.30650 -38.52956 -37.36083 -35.37348 -34.65386 -34.03136 -32.44431 -30.73151 -30.59452 -28.82040 -27.82448 -25.46919 -23.81837 -22.86692 -22.58984 -21.71754 -20.64284 -19.89061 -18.92434 -18.72888 -18.12344 -17.52569 -17.40059 -17.07785 -17.01997 -16.67598 -16.40583 -16.03302 -15.78744 -15.28783 -15.13578 -14.99499 -14.86287 -14.73450 -14.52224 -14.30694 -13.79675 -13.70661 -13.65453 -13.32498 -13.24737 -13.02306 -12.86173 -12.69663 -12.51764 -11.85185 -11.80803 -11.62438 -11.43010 -11.15686 -11.01831 -10.60675 -10.51651 -10.16721 -9.88529 -9.76824 -8.97064 -8.50041 -6.20490 0.99659 1.29844 1.33202 1.40468 1.49983 1.56292 1.62497 1.86747 2.04391 2.25650 2.33503 2.73319 2.88465 2.98528 3.20666 3.26793 3.50347 3.67477 3.87738 3.94029 4.03191 4.21688 4.27274 4.29149 4.31423 4.51216 4.58833 4.61219 4.67218 4.79588 4.85821 5.01134 5.14392 5.17207 5.46506 5.71936 5.87648 6.13247 6.16701 6.23268 6.35474 6.44875 6.93739 6.95241 7.18404 7.48365 8.62194 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.038444 B = 0.001749 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.152608 B =16003.845231 C =16270.554150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.044 3.956 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.233 1.233 6 H -0.261 1.261 7 C -0.530 4.530 8 H 0.062 0.938 9 S -0.173 6.173 10 C -0.114 4.114 11 C 0.543 3.457 12 O -0.556 6.556 13 N -0.704 5.704 14 C 0.132 3.868 15 H 0.088 0.912 16 C -0.140 4.140 17 C 0.095 3.905 18 N -0.606 5.606 19 C 0.517 3.483 20 O -0.575 6.575 21 C 0.112 3.888 22 H 0.164 0.836 23 C 0.103 3.897 24 N -0.731 5.731 25 C 0.694 3.306 26 O -0.639 6.639 27 N -0.715 5.715 28 C 0.105 3.895 29 H 0.276 0.724 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.418 0.582 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.146 0.854 38 H 0.089 0.911 39 H 0.440 0.560 40 H 0.435 0.565 41 H 0.068 0.932 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.275 -14.871 -7.959 29.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.189 1.189 5 H -0.157 1.157 6 H -0.186 1.186 7 C -0.677 4.677 8 H 0.080 0.920 9 S 0.053 5.947 10 C -0.265 4.265 11 C 0.328 3.672 12 O -0.434 6.434 13 N -0.357 5.357 14 C 0.026 3.974 15 H 0.107 0.893 16 C -0.179 4.179 17 C -0.026 4.026 18 N -0.341 5.341 19 C 0.304 3.696 20 O -0.453 6.453 21 C 0.002 3.998 22 H 0.181 0.819 23 C -0.022 4.022 24 N -0.394 5.394 25 C 0.393 3.607 26 O -0.521 6.521 27 N -0.376 5.376 28 C -0.019 4.019 29 H 0.086 0.914 30 H 0.130 0.870 31 H 0.135 0.865 32 H 0.256 0.744 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.164 0.836 38 H 0.107 0.893 39 H 0.283 0.717 40 H 0.277 0.723 41 H 0.086 0.914 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 25.670 -13.965 -7.133 30.080 hybrid contribution -1.790 -0.859 0.642 2.086 sum 23.880 -14.824 -6.491 28.847 Atomic orbital electron populations 1.70025 1.07376 1.28982 1.49189 1.25588 0.95265 1.02330 0.92940 0.85858 0.80789 0.79546 0.80123 1.18914 1.15679 1.18551 1.22483 0.90460 0.96624 1.58156 0.91991 1.84673 1.06172 1.06221 1.97591 1.23286 0.96033 0.99580 1.07566 1.19845 0.89234 0.83223 0.74871 1.90699 1.59116 1.43681 1.49871 1.45524 1.07681 1.07064 1.75480 1.22033 0.80903 0.96532 0.97897 0.89348 1.23077 0.97718 1.01422 0.95707 1.22479 0.99423 0.95765 0.84934 1.48372 1.18082 1.43768 1.23831 1.20992 0.85312 0.78240 0.85051 1.90782 1.78347 1.51893 1.24276 1.22140 0.90144 0.86126 1.01346 0.81908 1.22666 0.84850 0.93209 1.01427 1.45147 1.22858 1.06636 1.64756 1.16193 0.82327 0.83842 0.78373 1.90969 1.55422 1.52729 1.52967 1.44888 1.17805 1.10895 1.64015 1.22288 0.86120 0.94888 0.98603 0.91443 0.87048 0.86521 0.74397 0.88829 0.89379 0.87890 0.87122 0.83635 0.89279 0.71651 0.72274 0.91361 0.89164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.74 13.97 21.65 0.30 -54.43 16 2 C 0.04 2.52 5.50 84.86 0.47 2.98 16 3 Si 0.91 43.55 27.74 68.60 1.90 45.45 16 4 H -0.26 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.23 -10.92 6.73 99.48 0.67 -10.25 16 6 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 7 C -0.53 -29.72 10.04 67.96 0.68 -29.04 16 8 H 0.06 3.68 8.03 -2.91 -0.02 3.65 16 9 S -0.17 -8.21 18.54 -56.49 -1.05 -9.26 16 10 C -0.11 -3.81 6.16 71.24 0.44 -3.37 16 11 C 0.54 15.59 7.85 87.66 0.69 16.28 16 12 O -0.56 -20.46 15.50 -3.04 -0.05 -20.50 16 13 N -0.70 -12.19 5.20 -435.96 -2.27 -14.46 16 14 C 0.13 1.82 3.42 46.38 0.16 1.98 16 15 H 0.09 1.66 7.54 -2.38 -0.02 1.64 16 16 C -0.14 -1.07 6.65 31.78 0.21 -0.85 16 17 C 0.10 0.15 6.28 86.73 0.54 0.70 16 18 N -0.61 -5.24 3.33 -811.79 -2.70 -7.94 16 19 C 0.52 6.60 6.96 87.66 0.61 7.22 16 20 O -0.57 -13.88 16.83 -3.02 -0.05 -13.93 16 21 C 0.11 0.65 3.54 44.51 0.16 0.80 16 22 H 0.16 -0.50 7.62 -2.39 -0.02 -0.51 16 23 C 0.10 0.29 7.72 86.58 0.67 0.96 16 24 N -0.73 -7.54 6.39 -476.59 -3.04 -10.58 16 25 C 0.69 13.33 8.92 179.57 1.60 14.93 16 26 O -0.64 -19.04 18.05 -4.02 -0.07 -19.11 16 27 N -0.72 -9.57 5.62 -460.34 -2.59 -12.15 16 28 C 0.10 1.25 6.55 86.86 0.57 1.82 16 29 H 0.28 15.25 8.31 -92.70 -0.77 14.48 16 30 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 31 H 0.12 3.51 8.14 -2.40 -0.02 3.49 16 32 H 0.42 4.78 8.57 -92.71 -0.79 3.99 16 33 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.10 -0.27 8.14 -2.39 -0.02 -0.29 16 36 H 0.11 -0.42 7.97 -2.39 -0.02 -0.44 16 37 H 0.15 -0.82 8.14 -2.38 -0.02 -0.84 16 38 H 0.09 0.31 7.72 -2.39 -0.02 0.29 16 39 H 0.44 3.26 8.96 -92.71 -0.83 2.43 16 40 H 0.43 5.59 8.96 -92.71 -0.83 4.76 16 41 H 0.07 1.13 8.04 -2.39 -0.02 1.11 16 42 H 0.09 0.87 8.00 -2.39 -0.02 0.85 16 Total: -1.00 -91.73 370.28 -4.21 -95.94 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -1.40 Total: 6.56 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 6.80 Total: 14.41 kcal Atomic # 7 Polarization: -89.27 SS G_CDS: -10.29 Total: -99.56 kcal Atomic # 8 Polarization: -53.37 SS G_CDS: -0.17 Total: -53.54 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.90 Total: 45.45 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.05 Total: -9.26 kcal Total: -91.73 -4.21 -95.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576223619.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.866 kcal (2) G-P(sol) polarization free energy of solvation -91.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds