Wall clock time and date at job start Wed Apr 1 2020 01:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52997 * 109.46787 * 2 1 4 4 C 1.52994 * 109.47062 * 120.00103 * 2 1 3 5 5 H 1.09000 * 109.47017 * 299.99917 * 4 2 1 6 6 C 1.52997 * 109.47404 * 60.00274 * 4 2 1 7 7 N 1.46505 * 109.47212 * 174.99693 * 6 4 2 8 8 C 1.34771 * 119.99622 * 179.97438 * 7 6 4 9 9 O 1.21280 * 120.00597 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99622 * 179.97438 * 8 7 6 11 11 S 1.81002 * 109.47156 * 180.02562 * 10 8 7 12 12 C 1.76204 * 100.00151 * 180.02562 * 11 10 8 13 13 H 1.08000 * 119.99845 * 359.97438 * 12 11 10 14 14 C 1.38796 * 120.00054 * 180.02562 * 12 11 10 15 15 N 1.31631 * 120.00100 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99948 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47203 * 90.00024 * 16 14 12 18 18 H 1.48506 * 109.46989 * 210.00023 * 16 14 12 19 19 H 1.48506 * 109.47313 * 329.99924 * 16 14 12 20 20 N 1.46500 * 109.46849 * 180.02562 * 4 2 1 21 21 C 1.34779 * 120.00196 * 84.99779 * 20 4 2 22 22 O 1.21501 * 119.99867 * 0.02562 * 21 20 4 23 23 C 1.48280 * 120.00025 * 179.97438 * 21 20 4 24 24 C 1.47491 * 128.70993 * 179.69790 * 23 21 20 25 25 N 1.30650 * 102.71424 * 179.86079 * 24 23 21 26 26 O 1.20834 * 109.61897 * 0.42568 * 25 24 23 27 27 N 1.20902 * 115.90994 * 359.70239 * 26 25 24 28 28 H 1.09000 * 109.47128 * 299.99497 * 1 2 3 29 29 H 1.08998 * 109.47211 * 60.00065 * 1 2 3 30 30 H 1.08996 * 109.46508 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47128 * 240.00503 * 2 1 3 32 32 H 1.08995 * 109.47630 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47754 * 300.00409 * 3 2 1 34 34 H 1.09000 * 109.47325 * 60.00062 * 3 2 1 35 35 H 1.09002 * 109.47153 * 54.99686 * 6 4 2 36 36 H 1.09001 * 109.46832 * 294.99876 * 6 4 2 37 37 H 0.96996 * 119.99606 * 0.02562 * 7 6 4 38 38 H 1.09001 * 109.47380 * 300.00190 * 10 8 7 39 39 H 1.09002 * 109.47060 * 60.00278 * 10 8 7 40 40 H 0.96999 * 120.00126 * 180.02562 * 15 14 12 41 41 H 0.96998 * 120.00051 * 264.99732 * 20 4 2 42 42 H 1.07993 * 128.64175 * 359.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 1.5302 -2.1637 1.2492 7 7 2.1144 -2.8883 2.3806 8 6 1.8055 -4.1844 2.5825 9 8 1.0443 -4.7513 1.8275 10 6 2.4069 -4.9299 3.7460 11 16 1.8036 -6.6364 3.7461 12 6 2.6400 -7.2566 5.1675 13 1 3.2915 -6.6094 5.7359 14 6 2.4623 -8.5772 5.5561 15 7 1.6694 -9.3664 4.8625 16 14 3.3496 -9.2349 7.0626 17 1 2.5036 -9.0273 8.2653 18 1 3.6136 -10.6858 6.8874 19 1 4.6371 -8.5145 7.2327 20 7 3.5051 -0.7207 1.2494 21 6 4.1785 0.3374 1.7430 22 8 3.5706 1.2905 2.1881 23 6 5.6613 0.3376 1.7437 24 6 6.5832 1.3835 2.2250 25 7 7.7578 0.8621 1.9892 26 8 7.6241 -0.2261 1.4812 27 7 6.4848 -0.5926 1.3097 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4427 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.8185 -2.6511 0.3178 36 1 0.4438 -2.1651 1.3388 37 1 2.7229 -2.4348 2.9847 38 1 3.4932 -4.9290 3.6558 39 1 2.1193 -4.4424 4.6776 40 1 1.5450 -10.2892 5.1343 41 1 3.9904 -1.4818 0.8944 42 1 6.3463 2.3410 2.6647 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001582899071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:42:14 Heat of formation + Delta-G solvation = 11.926482 kcal Electronic energy + Delta-G solvation = -26988.677712 eV Core-core repulsion = 22906.467484 eV Total energy + Delta-G solvation = -4082.210228 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -47.97888 -41.56333 -40.48502 -38.21132 -35.91885 -35.57878 -35.33679 -34.59013 -34.31412 -31.56462 -29.31336 -28.11211 -27.67317 -26.79889 -25.16842 -24.11650 -22.24852 -21.84040 -21.14915 -20.09779 -19.97259 -19.53803 -18.70835 -17.83447 -17.77834 -17.24508 -16.88348 -16.61903 -16.54391 -16.06243 -15.82251 -15.37770 -15.07070 -14.76639 -14.60297 -14.38244 -14.16870 -13.86416 -13.60290 -13.42679 -13.17339 -13.04246 -12.98734 -12.90350 -12.74600 -12.64256 -12.45595 -12.43579 -11.95658 -11.79753 -11.75579 -11.66672 -11.50723 -11.14949 -11.01738 -10.32113 -10.28629 -10.18236 -8.66705 -8.35487 -6.13109 -0.38615 0.30627 1.25526 1.41663 1.41891 1.46696 1.56541 1.58615 1.74922 2.18996 2.26948 2.32477 2.43597 2.85771 2.98816 3.30387 3.43022 3.67040 3.73929 3.77334 3.94966 3.98424 4.20506 4.28363 4.29154 4.43080 4.49380 4.59464 4.62163 4.79511 4.83600 4.94248 5.03528 5.10312 5.19435 5.32299 5.41259 5.43491 5.48211 6.09444 6.19041 6.39030 6.74670 7.06188 7.17634 7.32104 8.73620 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.010626 B = 0.002634 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2634.393427 B =10627.898311 C =12801.398733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.099 4.099 3 C -0.134 4.134 4 C 0.151 3.849 5 H 0.102 0.898 6 C 0.113 3.887 7 N -0.715 5.715 8 C 0.538 3.462 9 O -0.558 6.558 10 C -0.133 4.133 11 S -0.145 6.145 12 C -0.548 4.548 13 H 0.081 0.919 14 C 0.015 3.985 15 N -0.910 5.910 16 Si 0.997 3.003 17 H -0.268 1.268 18 H -0.277 1.277 19 H -0.259 1.259 20 N -0.701 5.701 21 C 0.614 3.386 22 O -0.521 6.521 23 C -0.053 4.053 24 C 0.053 3.947 25 N -0.364 5.364 26 O 0.336 5.664 27 N -0.324 5.324 28 H 0.060 0.940 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.040 0.960 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.411 0.589 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.271 0.729 41 H 0.414 0.586 42 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.938 26.856 -8.344 28.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.119 4.119 3 C -0.191 4.191 4 C 0.046 3.954 5 H 0.120 0.880 6 C -0.011 4.011 7 N -0.369 5.369 8 C 0.323 3.677 9 O -0.436 6.436 10 C -0.284 4.284 11 S 0.082 5.918 12 C -0.695 4.695 13 H 0.099 0.901 14 C -0.190 4.190 15 N -0.547 5.547 16 Si 0.819 3.181 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.183 1.183 20 N -0.353 5.353 21 C 0.397 3.603 22 O -0.395 6.395 23 C -0.219 4.219 24 C -0.133 4.133 25 N -0.089 5.089 26 O 0.112 5.888 27 N -0.044 5.044 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.100 0.900 32 H 0.059 0.941 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.247 0.753 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.080 0.920 41 H 0.251 0.749 42 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 6.028 25.725 -9.648 28.128 hybrid contribution 1.008 0.264 1.919 2.183 sum 7.036 25.989 -7.729 28.012 Atomic orbital electron populations 1.21896 0.93316 1.02593 1.02977 1.21463 0.97071 0.96603 0.96722 1.21809 1.00118 0.95159 1.02011 1.21414 0.78023 0.94691 1.01230 0.88007 1.21813 0.99685 0.89997 0.89629 1.45715 1.49789 1.10029 1.31373 1.19954 0.80450 0.82217 0.85041 1.90706 1.36695 1.68419 1.47745 1.23386 1.04757 0.99998 1.00239 1.85524 1.63296 1.03945 1.39055 1.23200 1.32673 0.99832 1.13842 0.90080 1.26097 0.95994 0.96000 1.00946 1.70172 1.36843 1.07179 1.40473 0.84979 0.78650 0.77394 0.77121 1.19322 1.20264 1.18305 1.45905 1.07680 1.19987 1.61722 1.16367 0.82502 0.83234 0.78243 1.90873 1.67563 1.34480 1.46602 1.26286 0.97876 0.92721 1.05008 1.28268 0.83826 1.02730 0.98501 1.75116 1.24652 0.96442 1.12730 1.85122 1.22653 1.25943 1.55113 1.75413 0.92030 1.22320 1.14606 0.92060 0.91258 0.92062 0.89954 0.94052 0.92139 0.92467 0.90556 0.89229 0.75268 0.87436 0.87468 0.91963 0.74907 0.72743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.84 71.99 0.64 -1.06 16 2 C -0.10 -1.18 2.69 -10.79 -0.03 -1.21 16 3 C -0.13 -1.77 7.72 71.98 0.56 -1.22 16 4 C 0.15 2.01 2.00 44.99 0.09 2.10 16 5 H 0.10 1.48 7.57 -2.39 -0.02 1.46 16 6 C 0.11 2.00 4.73 86.38 0.41 2.41 16 7 N -0.71 -15.86 5.39 -463.06 -2.50 -18.36 16 8 C 0.54 18.43 7.85 87.66 0.69 19.11 16 9 O -0.56 -24.13 15.86 -3.03 -0.05 -24.18 16 10 C -0.13 -5.07 6.16 71.24 0.44 -4.63 16 11 S -0.15 -7.91 20.57 -56.49 -1.16 -9.08 16 12 C -0.55 -30.99 9.50 67.95 0.65 -30.35 16 13 H 0.08 4.27 7.80 -2.91 -0.02 4.25 16 14 C 0.01 0.82 5.49 84.86 0.47 1.29 16 15 N -0.91 -55.48 13.22 21.65 0.29 -55.20 16 16 Si 1.00 43.35 29.55 68.60 2.03 45.37 16 17 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 18 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 19 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 20 N -0.70 -9.17 4.40 -445.00 -1.96 -11.13 16 21 C 0.61 9.22 6.20 86.91 0.54 9.76 16 22 O -0.52 -9.59 14.17 -3.72 -0.05 -9.65 16 23 C -0.05 -0.76 7.56 44.29 0.34 -0.42 16 24 C 0.05 0.59 12.63 87.31 1.10 1.69 16 25 N -0.36 -5.31 12.22 -61.42 -0.75 -6.06 16 26 O 0.34 5.33 11.65 140.86 1.64 6.97 16 27 N -0.32 -5.16 12.13 -52.05 -0.63 -5.79 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.74 6.54 -2.39 -0.02 0.73 16 31 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.04 0.62 5.77 -2.39 -0.01 0.60 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.88 7.53 -2.39 -0.02 0.86 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.09 1.70 6.71 -2.39 -0.02 1.68 16 37 H 0.41 7.22 8.14 -92.71 -0.75 6.46 16 38 H 0.11 3.72 8.14 -2.40 -0.02 3.70 16 39 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 40 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 41 H 0.41 5.18 8.46 -92.71 -0.78 4.40 16 42 H 0.26 1.02 8.06 -2.91 -0.02 0.99 16 Total: -1.00 -75.57 373.74 2.28 -73.29 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -0.45 Total: 16.33 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 5.88 Total: -2.53 kcal Atomic # 7 Polarization: -90.99 SS G_CDS: -5.55 Total: -96.54 kcal Atomic # 8 Polarization: -28.39 SS G_CDS: 1.54 Total: -26.85 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -7.91 SS G_CDS: -1.16 Total: -9.08 kcal Total: -75.57 2.28 -73.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582899071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.221 kcal (2) G-P(sol) polarization free energy of solvation -75.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds