Wall clock time and date at job start Wed Apr 1 2020 01:17:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35566 * 125.82176 * 2 1 4 4 N 1.35413 * 107.15714 * 180.02562 * 3 2 1 5 5 H 0.96998 * 126.43317 * 179.97438 * 4 3 2 6 6 C 1.36665 * 107.11956 * 359.97438 * 4 3 2 7 7 C 1.47411 * 125.85954 * 179.97438 * 6 4 3 8 8 O 1.21599 * 120.00225 * 359.97438 * 7 6 4 9 9 N 1.34779 * 119.99826 * 180.02562 * 7 6 4 10 10 C 1.46494 * 119.99921 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47283 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47269 * 305.00317 * 11 10 9 13 13 O 1.42903 * 109.46459 * 65.00211 * 11 10 9 14 14 C 1.53001 * 109.47376 * 185.00021 * 11 10 9 15 15 N 1.46497 * 109.46900 * 180.02562 * 14 11 10 16 16 C 1.34783 * 119.99638 * 180.02562 * 15 14 11 17 17 O 1.21276 * 119.99934 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99567 * 179.97438 * 16 15 14 19 19 S 1.81003 * 109.46548 * 179.97438 * 18 16 15 20 20 C 1.76208 * 99.99641 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99843 * 0.02562 * 20 19 18 22 22 C 1.38797 * 119.99639 * 179.97438 * 20 19 18 23 23 N 1.31632 * 120.00457 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99706 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46901 * 60.00207 * 24 22 20 26 26 H 1.48504 * 109.46851 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46944 * 300.00164 * 24 22 20 28 28 N 1.31617 * 108.27538 * 0.22987 * 6 4 3 29 29 H 1.08991 * 109.47508 * 89.99432 * 1 2 3 30 30 H 1.08998 * 109.46692 * 209.99996 * 1 2 3 31 31 H 1.09001 * 109.46778 * 329.99335 * 1 2 3 32 32 H 1.07994 * 126.42425 * 0.04338 * 3 2 1 33 33 H 0.96999 * 119.99691 * 0.02562 * 9 7 6 34 34 H 1.09005 * 109.47040 * 60.00167 * 10 9 7 35 35 H 1.08999 * 109.47079 * 299.99869 * 10 9 7 36 36 H 0.96700 * 114.00311 * 60.00313 * 13 11 10 37 37 H 1.08999 * 109.47164 * 300.00361 * 14 11 10 38 38 H 1.08997 * 109.47124 * 60.00063 * 14 11 10 39 39 H 0.96996 * 120.00310 * 359.97438 * 15 14 11 40 40 H 1.08998 * 109.47167 * 299.99565 * 18 16 15 41 41 H 1.09001 * 109.47098 * 60.00477 * 18 16 15 42 42 H 0.96996 * 120.00031 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0992 0.0000 4 7 3.5834 0.6659 -0.0006 5 1 4.3789 1.2209 -0.0011 6 6 3.5465 -0.7003 -0.0003 7 6 4.7175 -1.5957 -0.0013 8 8 5.8402 -1.1286 -0.0029 9 7 4.5438 -2.9323 -0.0015 10 6 5.7074 -3.8221 -0.0030 11 6 5.2363 -5.2779 -0.0022 12 1 4.5648 -5.4420 0.8405 13 8 4.5463 -5.5557 -1.2224 14 6 6.4466 -6.2056 0.1219 15 7 5.9955 -7.5994 0.1220 16 6 6.8944 -8.5986 0.2230 17 8 8.0767 -8.3438 0.3133 18 6 6.4303 -10.0323 0.2237 19 16 7.8622 -11.1298 0.3704 20 6 7.0520 -12.6944 0.3471 21 1 5.9767 -12.7444 0.2605 22 6 7.7960 -13.8625 0.4392 23 7 9.1067 -13.8015 0.5443 24 14 6.9372 -15.5212 0.4138 25 1 6.1891 -15.6718 -0.8601 26 1 7.9479 -16.6036 0.5246 27 1 5.9922 -15.6068 1.5560 28 7 2.2861 -1.0792 -0.0047 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 1.9711 2.1277 0.0007 33 1 3.6482 -3.3049 -0.0013 34 1 6.3092 -3.6349 0.8864 35 1 6.3072 -3.6345 -0.8936 36 1 5.0845 -5.4304 -2.0160 37 1 7.1182 -6.0414 -0.7208 38 1 6.9730 -5.9936 1.0525 39 1 5.0499 -7.8031 0.0502 40 1 5.7585 -10.1964 1.0663 41 1 5.9043 -10.2444 -0.7071 42 1 9.6266 -14.6179 0.6083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001582988724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:00 Heat of formation + Delta-G solvation = -73.412403 kcal Electronic energy + Delta-G solvation = -25440.277106 eV Core-core repulsion = 21354.366307 eV Total energy + Delta-G solvation = -4085.910799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.79283 -40.05862 -39.29613 -37.93257 -34.98815 -34.16984 -33.71970 -32.42173 -31.97843 -30.76468 -29.12367 -27.65753 -25.89021 -25.38828 -23.59297 -22.33265 -21.00968 -20.81068 -20.36510 -19.20883 -17.97252 -17.40423 -16.98210 -16.83452 -16.32605 -16.16734 -15.82733 -15.33200 -15.14488 -14.79529 -14.66723 -14.65071 -14.32566 -13.93367 -13.83429 -13.56534 -13.35262 -13.11238 -13.07142 -12.72782 -12.66879 -12.55164 -11.77261 -11.50110 -11.04082 -11.02978 -10.94211 -10.81737 -10.77694 -10.66094 -10.57261 -9.81922 -9.68234 -9.44714 -9.06107 -8.96732 -8.94475 -8.24032 -6.49767 -6.20899 -3.91756 0.82526 1.99978 2.01180 2.85473 2.89382 3.06702 3.07408 3.24481 3.28238 3.31453 3.62562 3.72414 3.95999 4.21254 4.26737 4.33072 4.47221 4.53458 4.58012 4.67604 5.08707 5.14267 5.15558 5.19193 5.22009 5.23642 5.39679 5.47747 5.48855 5.60652 5.73578 5.80536 5.89723 6.05291 6.14902 6.52882 6.56903 6.85568 7.15161 7.29397 7.60038 7.61035 7.67783 8.35787 8.57902 9.24334 10.86464 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.029963 B = 0.001480 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.256552 B =18915.961397 C =19706.157740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.000 4.000 3 C -0.022 4.022 4 N -0.523 5.523 5 H 0.431 0.569 6 C 0.146 3.854 7 C 0.607 3.393 8 O -0.541 6.541 9 N -0.697 5.697 10 C 0.090 3.910 11 C 0.086 3.914 12 H 0.116 0.884 13 O -0.553 6.553 14 C 0.093 3.907 15 N -0.733 5.733 16 C 0.532 3.468 17 O -0.518 6.518 18 C -0.153 4.153 19 S -0.061 6.061 20 C -0.537 4.537 21 H 0.072 0.928 22 C 0.074 3.926 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 N -0.438 5.438 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.188 0.812 33 H 0.418 0.582 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.381 0.619 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.403 0.597 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.156 31.457 -1.827 35.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.134 4.134 3 C -0.161 4.161 4 N -0.125 5.125 5 H 0.271 0.729 6 C -0.116 4.116 7 C 0.391 3.609 8 O -0.417 6.417 9 N -0.349 5.349 10 C -0.034 4.034 11 C 0.026 3.974 12 H 0.134 0.866 13 O -0.359 6.359 14 C -0.032 4.032 15 N -0.389 5.389 16 C 0.318 3.682 17 O -0.393 6.393 18 C -0.303 4.303 19 S 0.166 5.834 20 C -0.685 4.685 21 H 0.091 0.909 22 C -0.135 4.135 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.199 1.199 28 N -0.162 5.162 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.205 0.795 33 H 0.255 0.745 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.230 0.770 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.238 0.762 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.884 31.105 -1.257 34.505 hybrid contribution -1.622 -0.240 -0.489 1.711 sum -16.505 30.865 -1.747 35.045 Atomic orbital electron populations 1.20087 0.86832 1.03150 1.02670 1.20948 0.97135 0.87860 1.07435 1.22790 0.82912 1.01190 1.09248 1.42888 1.09290 1.07511 1.52824 0.72931 1.22533 0.93709 0.82386 1.12923 1.16424 0.85529 0.82014 0.76912 1.90872 1.23738 1.76097 1.51021 1.45462 1.11340 1.04507 1.73571 1.22090 0.88135 0.88844 1.04335 1.22397 0.94620 0.91205 0.89164 0.86649 1.86614 1.42451 1.91302 1.15489 1.21799 0.95869 0.81910 1.03667 1.45833 1.10755 1.04821 1.77450 1.20338 0.85933 0.86776 0.75114 1.90707 1.16686 1.84431 1.47434 1.23525 1.06986 0.94771 1.05068 1.85389 1.04630 0.97372 1.96008 1.22836 0.95455 0.91571 1.58620 0.90933 1.24987 0.94879 0.99157 0.94499 1.70007 1.04859 1.29024 1.46428 0.86222 0.78992 0.81472 0.78803 1.19934 1.20814 1.19933 1.70113 0.99093 1.31080 1.15896 0.91031 0.90744 0.91002 0.79546 0.74479 0.89459 0.90063 0.77013 0.90873 0.90278 0.76191 0.89159 0.89116 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.42 36.01 0.38 0.07 16 2 C 0.00 0.00 7.07 -83.00 -0.59 -0.58 16 3 C -0.02 -0.11 11.91 -16.93 -0.20 -0.31 16 4 N -0.52 -3.29 6.14 -10.78 -0.07 -3.36 16 5 H 0.43 1.82 8.96 -40.82 -0.37 1.46 16 6 C 0.15 1.30 7.95 -154.52 -1.23 0.08 16 7 C 0.61 5.93 7.81 -12.52 -0.10 5.83 16 8 O -0.54 -6.57 17.09 5.28 0.09 -6.48 16 9 N -0.70 -5.45 5.50 -61.39 -0.34 -5.79 16 10 C 0.09 0.63 5.31 -4.04 -0.02 0.61 16 11 C 0.09 0.58 3.09 -26.73 -0.08 0.50 16 12 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 13 O -0.55 -3.99 13.03 -35.23 -0.46 -4.45 16 14 C 0.09 0.91 5.34 -4.04 -0.02 0.89 16 15 N -0.73 -9.13 5.45 -60.30 -0.33 -9.46 16 16 C 0.53 9.66 7.85 -10.98 -0.09 9.58 16 17 O -0.52 -11.53 15.86 5.56 0.09 -11.44 16 18 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.29 9.50 30.94 0.29 -14.99 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 24 Si 0.92 21.40 29.55 -169.99 -5.02 16.37 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 28 N -0.44 -4.06 10.89 -7.50 -0.08 -4.14 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.19 0.21 8.06 -52.49 -0.42 -0.21 16 33 H 0.42 3.08 8.15 -40.82 -0.33 2.75 16 34 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.38 1.92 9.05 45.56 0.41 2.33 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.40 4.15 8.35 -40.82 -0.34 3.81 16 40 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 41 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 386.64 15.07 5.83 5.83 Total: -1.00 -38.65 386.64 -8.12 -46.77 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -4.82 Total: 4.59 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -1.53 Total: 0.85 kcal Atomic # 7 Polarization: -48.11 SS G_CDS: -0.08 Total: -48.19 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.28 Total: -22.37 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.65 -8.12 -46.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582988724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.638 kcal (2) G-P(sol) polarization free energy of solvation -38.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds