Wall clock time and date at job start Wed Apr 1 2020 01:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35566 * 125.82176 * 2 1 4 4 N 1.35413 * 107.15714 * 180.02562 * 3 2 1 5 5 H 0.96998 * 126.43317 * 179.97438 * 4 3 2 6 6 C 1.36665 * 107.11956 * 359.97438 * 4 3 2 7 7 C 1.47411 * 125.85954 * 179.97438 * 6 4 3 8 8 O 1.21599 * 120.00225 * 359.97438 * 7 6 4 9 9 N 1.34779 * 119.99826 * 180.02562 * 7 6 4 10 10 C 1.46494 * 119.99921 * 179.97438 * 9 7 6 11 11 C 1.53003 * 109.47283 * 179.97438 * 10 9 7 12 12 H 1.08999 * 109.47269 * 305.00317 * 11 10 9 13 13 O 1.42903 * 109.46459 * 65.00211 * 11 10 9 14 14 C 1.53001 * 109.47376 * 185.00021 * 11 10 9 15 15 N 1.46497 * 109.46900 * 180.02562 * 14 11 10 16 16 C 1.34783 * 119.99638 * 180.02562 * 15 14 11 17 17 O 1.21276 * 119.99934 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99567 * 179.97438 * 16 15 14 19 19 S 1.81003 * 109.46548 * 179.97438 * 18 16 15 20 20 C 1.76208 * 99.99641 * 179.97438 * 19 18 16 21 21 H 1.08001 * 119.99843 * 0.02562 * 20 19 18 22 22 C 1.38797 * 119.99639 * 179.97438 * 20 19 18 23 23 N 1.31632 * 120.00457 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99706 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46901 * 60.00207 * 24 22 20 26 26 H 1.48504 * 109.46851 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46944 * 300.00164 * 24 22 20 28 28 N 1.31617 * 108.27538 * 0.22987 * 6 4 3 29 29 H 1.08991 * 109.47508 * 89.99432 * 1 2 3 30 30 H 1.08998 * 109.46692 * 209.99996 * 1 2 3 31 31 H 1.09001 * 109.46778 * 329.99335 * 1 2 3 32 32 H 1.07994 * 126.42425 * 0.04338 * 3 2 1 33 33 H 0.96999 * 119.99691 * 0.02562 * 9 7 6 34 34 H 1.09005 * 109.47040 * 60.00167 * 10 9 7 35 35 H 1.08999 * 109.47079 * 299.99869 * 10 9 7 36 36 H 0.96700 * 114.00311 * 60.00313 * 13 11 10 37 37 H 1.08999 * 109.47164 * 300.00361 * 14 11 10 38 38 H 1.08997 * 109.47124 * 60.00063 * 14 11 10 39 39 H 0.96996 * 120.00310 * 359.97438 * 15 14 11 40 40 H 1.08998 * 109.47167 * 299.99565 * 18 16 15 41 41 H 1.09001 * 109.47098 * 60.00477 * 18 16 15 42 42 H 0.96996 * 120.00031 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3005 1.0992 0.0000 4 7 3.5834 0.6659 -0.0006 5 1 4.3789 1.2209 -0.0011 6 6 3.5465 -0.7003 -0.0003 7 6 4.7175 -1.5957 -0.0013 8 8 5.8402 -1.1286 -0.0029 9 7 4.5438 -2.9323 -0.0015 10 6 5.7074 -3.8221 -0.0030 11 6 5.2363 -5.2779 -0.0022 12 1 4.5648 -5.4420 0.8405 13 8 4.5463 -5.5557 -1.2224 14 6 6.4466 -6.2056 0.1219 15 7 5.9955 -7.5994 0.1220 16 6 6.8944 -8.5986 0.2230 17 8 8.0767 -8.3438 0.3133 18 6 6.4303 -10.0323 0.2237 19 16 7.8622 -11.1298 0.3704 20 6 7.0520 -12.6944 0.3471 21 1 5.9767 -12.7444 0.2605 22 6 7.7960 -13.8625 0.4392 23 7 9.1067 -13.8015 0.5443 24 14 6.9372 -15.5212 0.4138 25 1 6.1891 -15.6718 -0.8601 26 1 7.9479 -16.6036 0.5246 27 1 5.9922 -15.6068 1.5560 28 7 2.2861 -1.0792 -0.0047 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5140 32 1 1.9711 2.1277 0.0007 33 1 3.6482 -3.3049 -0.0013 34 1 6.3092 -3.6349 0.8864 35 1 6.3072 -3.6345 -0.8936 36 1 5.0845 -5.4304 -2.0160 37 1 7.1182 -6.0414 -0.7208 38 1 6.9730 -5.9936 1.0525 39 1 5.0499 -7.8031 0.0502 40 1 5.7585 -10.1964 1.0663 41 1 5.9043 -10.2444 -0.7071 42 1 9.6266 -14.6179 0.6083 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001582988724.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:16:58 Heat of formation + Delta-G solvation = -107.458713 kcal Electronic energy + Delta-G solvation = -25441.753465 eV Core-core repulsion = 21354.366307 eV Total energy + Delta-G solvation = -4087.387158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.29645 -40.89311 -40.45046 -38.77569 -35.72959 -35.25401 -34.57328 -34.20476 -32.53811 -31.77390 -30.28053 -28.21512 -27.66574 -26.53242 -24.23736 -22.99981 -21.74236 -21.62037 -21.26918 -19.92051 -19.71461 -18.27639 -17.83501 -17.60629 -17.46107 -16.86992 -16.83476 -16.70420 -16.37442 -16.23317 -15.67476 -15.47190 -15.13663 -14.87961 -14.80728 -14.42555 -14.36132 -14.15018 -13.99362 -13.65143 -13.46949 -13.16027 -13.11877 -13.04256 -12.85202 -12.62285 -12.13907 -11.75407 -11.66968 -11.35838 -11.28653 -11.19875 -11.11972 -10.92454 -10.36487 -10.27267 -10.13464 -9.41904 -8.65736 -8.33619 -6.11829 0.25371 1.26245 1.42263 1.44904 1.50083 1.50678 1.58938 1.61567 2.21324 2.25988 2.29032 2.51204 3.00504 3.13926 3.31385 3.38607 3.58329 3.71146 3.94102 3.95886 4.06915 4.11016 4.30201 4.38223 4.39545 4.53397 4.60799 4.71426 4.84760 4.95286 4.96487 4.99091 5.12382 5.16427 5.39556 5.42690 5.64473 6.12474 6.20565 6.24278 6.49122 6.66731 6.75873 6.96405 7.07651 7.24329 8.75297 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.029963 B = 0.001480 C = 0.001421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.256552 B =18915.961397 C =19706.157740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.029 4.029 3 C 0.002 3.998 4 N -0.518 5.518 5 H 0.439 0.561 6 C 0.112 3.888 7 C 0.605 3.395 8 O -0.574 6.574 9 N -0.688 5.688 10 C 0.093 3.907 11 C 0.109 3.891 12 H 0.128 0.872 13 O -0.559 6.559 14 C 0.090 3.910 15 N -0.706 5.706 16 C 0.534 3.466 17 O -0.566 6.566 18 C -0.130 4.130 19 S -0.152 6.152 20 C -0.549 4.549 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.911 5.911 24 Si 0.998 3.002 25 H -0.262 1.262 26 H -0.279 1.279 27 H -0.262 1.262 28 N -0.458 5.458 29 H 0.076 0.924 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.230 0.770 33 H 0.421 0.579 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.392 0.608 37 H 0.072 0.928 38 H 0.076 0.924 39 H 0.418 0.582 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.169 32.615 -2.034 38.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.163 4.163 3 C -0.138 4.138 4 N -0.121 5.121 5 H 0.280 0.720 6 C -0.148 4.148 7 C 0.390 3.610 8 O -0.453 6.453 9 N -0.339 5.339 10 C -0.031 4.031 11 C 0.048 3.952 12 H 0.145 0.855 13 O -0.367 6.367 14 C -0.034 4.034 15 N -0.360 5.360 16 C 0.320 3.680 17 O -0.445 6.445 18 C -0.281 4.281 19 S 0.076 5.924 20 C -0.696 4.696 21 H 0.101 0.899 22 C -0.190 4.190 23 N -0.548 5.548 24 Si 0.820 3.180 25 H -0.187 1.187 26 H -0.204 1.204 27 H -0.187 1.187 28 N -0.182 5.182 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.114 0.886 32 H 0.246 0.754 33 H 0.259 0.741 34 H 0.104 0.896 35 H 0.100 0.900 36 H 0.242 0.758 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.256 0.744 40 H 0.128 0.872 41 H 0.128 0.872 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.951 32.282 -1.479 36.967 hybrid contribution -0.800 -0.409 -0.449 1.004 sum -18.751 31.873 -1.927 37.030 Atomic orbital electron populations 1.20149 0.85236 1.03849 1.03177 1.21537 0.98429 0.88014 1.08317 1.23502 0.81847 1.02593 1.05884 1.42982 1.10277 1.06838 1.51958 0.71956 1.22361 0.93397 0.83380 1.15622 1.16607 0.85466 0.82511 0.76414 1.90842 1.24904 1.76660 1.52879 1.45407 1.11626 1.04138 1.72755 1.22060 0.87934 0.88747 1.04404 1.22154 0.93304 0.90080 0.89614 0.85485 1.86604 1.42859 1.91216 1.15981 1.21983 0.97317 0.80550 1.03598 1.45546 1.10662 1.04919 1.74902 1.20031 0.85783 0.86993 0.75196 1.90698 1.18712 1.84899 1.50146 1.23373 1.03634 0.94326 1.06799 1.85554 1.10524 0.99981 1.96385 1.23191 0.95959 0.91951 1.58536 0.89888 1.26117 0.95561 1.03674 0.93693 1.70176 1.06766 1.30226 1.47593 0.85010 0.77850 0.75690 0.79481 1.18680 1.20406 1.18661 1.70050 0.99498 1.32550 1.16142 0.90572 0.91781 0.88592 0.75365 0.74106 0.89588 0.89963 0.75797 0.90991 0.90536 0.74443 0.87205 0.87245 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.45 10.42 71.24 0.74 0.29 16 2 C -0.03 -0.36 7.07 41.75 0.30 -0.06 16 3 C 0.00 0.01 11.91 83.52 0.99 1.01 16 4 N -0.52 -5.84 6.14 -188.01 -1.16 -7.00 16 5 H 0.44 3.23 8.96 -92.71 -0.83 2.40 16 6 C 0.11 1.96 7.95 136.28 1.08 3.04 16 7 C 0.61 11.80 7.81 86.66 0.68 12.48 16 8 O -0.57 -14.14 17.09 -4.03 -0.07 -14.20 16 9 N -0.69 -10.39 5.50 -466.39 -2.56 -12.95 16 10 C 0.09 1.22 5.31 86.38 0.46 1.67 16 11 C 0.11 1.28 3.09 30.60 0.09 1.37 16 12 H 0.13 1.29 8.14 -2.39 -0.02 1.27 16 13 O -0.56 -6.87 13.03 -148.98 -1.94 -8.81 16 14 C 0.09 1.65 5.34 86.38 0.46 2.11 16 15 N -0.71 -16.33 5.45 -463.06 -2.52 -18.85 16 16 C 0.53 19.06 7.85 87.66 0.69 19.75 16 17 O -0.57 -25.60 15.86 -3.02 -0.05 -25.65 16 18 C -0.13 -5.09 6.16 71.24 0.44 -4.65 16 19 S -0.15 -8.40 20.57 -56.49 -1.16 -9.57 16 20 C -0.55 -31.35 9.50 67.95 0.65 -30.70 16 21 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 22 C 0.01 0.82 5.49 84.86 0.47 1.28 16 23 N -0.91 -56.06 13.22 21.65 0.29 -55.78 16 24 Si 1.00 43.56 29.55 68.60 2.03 45.59 16 25 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 26 H -0.28 -11.87 7.11 99.48 0.71 -11.17 16 27 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 28 N -0.46 -8.18 10.89 -177.63 -1.94 -10.11 16 29 H 0.08 0.43 8.14 -2.39 -0.02 0.42 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.23 -0.46 8.06 -2.91 -0.02 -0.48 16 33 H 0.42 5.87 8.15 -92.71 -0.76 5.11 16 34 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.08 16 36 H 0.39 3.17 9.05 -74.06 -0.67 2.50 16 37 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 39 H 0.42 7.43 8.35 -92.71 -0.77 6.66 16 40 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 41 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 42 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -86.76 386.64 -3.96 -90.72 By element: Atomic # 1 Polarization: 20.94 SS G_CDS: -1.92 Total: 19.02 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 7.05 Total: 7.60 kcal Atomic # 7 Polarization: -96.80 SS G_CDS: -7.89 Total: -104.69 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -2.06 Total: -48.66 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.16 Total: -9.57 kcal Total: -86.76 -3.96 -90.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001582988724.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.741 kcal (2) G-P(sol) polarization free energy of solvation -86.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds