Wall clock time and date at job start Wed Apr 1 2020 00:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86803 * 119.99909 * 2 1 4 4 H 1.48489 * 109.47341 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47091 * 119.99897 * 3 2 1 6 6 H 1.48496 * 109.47153 * 239.99232 * 3 2 1 7 7 C 1.37873 * 120.00272 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00437 * 184.74034 * 7 2 1 9 9 C 1.50705 * 119.99780 * 4.74444 * 7 2 1 10 10 O 1.42904 * 110.88477 * 304.48821 * 9 7 2 11 11 C 1.55156 * 111.00630 * 68.36847 * 9 7 2 12 12 C 1.54325 * 102.94415 * 153.57561 * 11 9 7 13 13 N 1.47027 * 107.26813 * 337.81242 * 12 11 9 14 14 C 1.34777 * 125.64244 * 178.91085 * 13 12 11 15 15 O 1.21355 * 119.99464 * 180.02562 * 14 13 12 16 16 C 1.49450 * 120.00267 * 0.02562 * 14 13 12 17 17 O 1.21345 * 120.00066 * 6.29756 * 16 14 13 18 18 N 1.34775 * 119.99759 * 186.29133 * 16 14 13 19 19 C 1.47155 * 120.98365 * 6.14802 * 18 16 14 20 20 C 1.52884 * 108.60515 * 230.49907 * 19 18 16 21 21 O 1.42961 * 109.29734 * 307.93143 * 20 19 18 22 22 C 1.42959 * 114.16428 * 62.45231 * 21 20 19 23 23 H 1.09000 * 109.55985 * 57.36736 * 22 21 20 24 24 C 1.50707 * 109.51384 * 177.49302 * 22 21 20 25 25 O 1.20823 * 119.99534 * 4.74389 * 24 22 21 26 26 O 1.34229 * 119.99956 * 184.74811 * 24 22 21 27 27 C 1.47156 * 120.97933 * 186.42649 * 18 16 14 28 28 C 1.47467 * 108.72539 * 358.96923 * 13 12 11 29 29 H 0.97000 * 120.00584 * 174.80035 * 1 2 3 30 30 H 0.96699 * 114.00211 * 295.70134 * 10 9 7 31 31 H 1.08996 * 110.72265 * 271.94554 * 11 9 7 32 32 H 1.09002 * 110.71672 * 35.03560 * 11 9 7 33 33 H 1.09004 * 109.87930 * 97.22274 * 12 11 9 34 34 H 1.08992 * 109.88508 * 218.39329 * 12 11 9 35 35 H 1.08994 * 109.68225 * 350.27953 * 19 18 16 36 36 H 1.08995 * 109.67871 * 110.83529 * 19 18 16 37 37 H 1.09003 * 109.57777 * 187.92366 * 20 19 18 38 38 H 1.08998 * 109.40695 * 67.84363 * 20 19 18 39 39 H 0.96702 * 116.99624 * 179.97438 * 26 24 22 40 40 H 1.08998 * 109.67987 * 249.16599 * 27 18 16 41 41 H 1.09000 * 109.68401 * 9.72414 * 27 18 16 42 42 H 1.08997 * 110.34820 * 265.26091 * 28 13 12 43 43 H 1.09002 * 110.40494 * 142.91857 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1029 1.6964 -1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0817 -1.1956 0.0778 9 6 1.2548 -2.4969 -0.1068 10 8 0.2690 -2.6038 0.9222 11 6 0.6130 -2.6553 -1.5105 12 6 0.5219 -4.1867 -1.6782 13 7 1.5126 -4.7848 -0.7713 14 6 1.7304 -6.1046 -0.6063 15 8 2.5778 -6.4867 0.1737 16 6 0.9284 -7.0973 -1.3840 17 8 0.1628 -6.7174 -2.2454 18 7 1.0555 -8.4145 -1.1286 19 6 1.8735 -8.8923 -0.0025 20 6 2.8335 -9.9649 -0.5176 21 8 2.0932 -10.9580 -1.2315 22 6 1.4221 -10.4648 -2.3935 23 1 2.1469 -10.0083 -3.0674 24 6 0.7294 -11.6040 -3.0962 25 8 0.7302 -12.7073 -2.6039 26 8 0.1118 -11.3927 -4.2691 27 6 0.3852 -9.4176 -1.9712 28 6 2.2278 -3.7019 -0.0709 29 1 -0.4851 -0.8365 -0.0761 30 1 0.6357 -2.6366 1.8163 31 1 -0.3793 -2.2050 -1.5339 32 1 1.2515 -2.2179 -2.2780 33 1 -0.4782 -4.5298 -1.4128 34 1 0.7490 -4.4610 -2.7083 35 1 2.4427 -8.0623 0.4159 36 1 1.2280 -9.3193 0.7649 37 1 3.3479 -10.4292 0.3238 38 1 3.5647 -9.5069 -1.1837 39 1 -0.3183 -12.1541 -4.6821 40 1 -0.4126 -9.8984 -1.4053 41 1 -0.0306 -8.9353 -2.8558 42 1 3.1526 -3.4583 -0.5938 43 1 2.4377 -3.9894 0.9593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594606337.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:52 Heat of formation + Delta-G solvation = -237.341560 kcal Electronic energy + Delta-G solvation = -30951.234747 eV Core-core repulsion = 26383.169824 eV Total energy + Delta-G solvation = -4568.064923 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.140 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.40886 -41.56448 -40.49362 -39.44383 -39.18308 -37.27193 -36.65325 -35.74672 -34.31250 -33.14802 -31.82199 -30.13776 -29.67004 -27.56767 -26.51393 -25.23013 -24.17214 -23.18187 -22.12214 -21.72572 -20.65190 -19.54714 -19.34481 -18.70107 -18.42512 -17.78972 -17.52900 -17.44150 -17.32341 -17.21445 -17.10786 -16.22996 -15.80694 -15.72410 -15.60531 -15.23377 -15.02878 -14.95875 -14.65035 -14.31395 -14.17697 -14.01196 -13.87043 -13.69653 -13.36219 -12.94012 -12.91014 -12.68018 -12.53867 -12.31901 -12.29661 -12.08021 -11.98378 -11.90074 -11.75467 -11.49043 -11.30655 -10.56716 -10.32777 -10.20104 -10.00512 -9.77351 -8.48043 -6.37247 0.12432 0.79321 1.06121 1.42610 1.60637 1.65564 1.84968 1.91183 2.06511 2.61211 2.86934 2.88975 3.22130 3.29182 3.57575 3.63076 3.75641 3.84170 3.96742 4.01006 4.10054 4.15217 4.19090 4.34088 4.37949 4.45436 4.57265 4.66840 4.70827 4.78877 4.89506 4.96509 5.11337 5.14875 5.42262 5.43627 5.69425 5.77835 5.88731 6.08827 6.19621 6.41128 6.68834 6.71190 6.83903 7.11871 7.56057 8.89020 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.029739 B = 0.002412 C = 0.002313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.290963 B =11604.513230 C =12100.050288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.005 4.005 3 Si 1.108 2.892 4 H -0.291 1.291 5 H -0.274 1.274 6 H -0.271 1.271 7 C -0.644 4.644 8 H 0.055 0.945 9 C 0.222 3.778 10 O -0.579 6.579 11 C -0.111 4.111 12 C 0.122 3.878 13 N -0.573 5.573 14 C 0.516 3.484 15 O -0.530 6.530 16 C 0.518 3.482 17 O -0.524 6.524 18 N -0.583 5.583 19 C 0.013 3.987 20 C 0.057 3.943 21 O -0.374 6.374 22 C 0.089 3.911 23 H 0.119 0.881 24 C 0.502 3.498 25 O -0.526 6.526 26 O -0.499 6.499 27 C 0.092 3.908 28 C 0.096 3.904 29 H 0.278 0.722 30 H 0.368 0.632 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.160 0.840 36 H 0.085 0.915 37 H 0.141 0.859 38 H 0.068 0.932 39 H 0.438 0.562 40 H 0.093 0.907 41 H 0.119 0.881 42 H 0.079 0.921 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.664 -19.904 -5.812 21.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.209 4.209 3 Si 0.931 3.069 4 H -0.217 1.217 5 H -0.199 1.199 6 H -0.196 1.196 7 C -0.682 4.682 8 H 0.073 0.927 9 C 0.182 3.818 10 O -0.385 6.385 11 C -0.150 4.150 12 C -0.001 4.001 13 N -0.304 5.304 14 C 0.300 3.700 15 O -0.411 6.411 16 C 0.301 3.699 17 O -0.400 6.400 18 N -0.318 5.318 19 C -0.108 4.108 20 C -0.019 4.019 21 O -0.293 6.293 22 C 0.029 3.971 23 H 0.137 0.863 24 C 0.342 3.658 25 O -0.414 6.414 26 O -0.314 6.314 27 C -0.031 4.031 28 C -0.026 4.026 29 H 0.091 0.909 30 H 0.215 0.785 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.176 0.824 36 H 0.103 0.897 37 H 0.158 0.842 38 H 0.087 0.913 39 H 0.302 0.698 40 H 0.111 0.889 41 H 0.137 0.863 42 H 0.097 0.903 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.245 -18.522 -5.962 19.726 hybrid contribution 0.038 -1.909 0.202 1.920 sum 3.283 -20.430 -5.760 21.479 Atomic orbital electron populations 1.70739 1.07876 1.32644 1.44198 1.26953 0.96464 1.05588 0.91887 0.83038 0.74147 0.71890 0.77781 1.21656 1.19931 1.19607 1.22397 0.94741 0.92321 1.58713 0.92689 1.20048 0.84989 0.91063 0.85729 1.86370 1.37798 1.96585 1.17765 1.22676 1.01405 0.93227 0.97675 1.22142 0.91467 0.92927 0.93520 1.48500 1.36679 1.04382 1.40836 1.19886 0.84338 0.82378 0.83392 1.90271 1.36004 1.76347 1.38499 1.19838 0.82742 0.83529 0.83819 1.90761 1.36673 1.79001 1.33575 1.47914 1.49194 1.03744 1.30902 1.23947 0.95833 1.02889 0.88110 1.23186 0.92504 0.88670 0.97576 1.88023 1.66796 1.35725 1.38742 1.21708 0.95744 0.90136 0.89498 0.86337 1.22461 0.75649 0.88237 0.79409 1.90759 1.57384 1.26927 1.66375 1.84452 1.65586 1.47304 1.34053 1.22265 0.94473 0.88632 0.97705 1.23108 0.96332 0.86081 0.97101 0.90920 0.78485 0.92065 0.90197 0.91551 0.89571 0.82445 0.89699 0.84165 0.91336 0.69823 0.88930 0.86279 0.90267 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.20 13.39 21.44 0.29 -51.92 16 2 C 0.00 -0.25 5.31 84.66 0.45 0.20 16 3 Si 1.11 46.44 29.91 68.60 2.05 48.50 16 4 H -0.29 -12.52 7.11 99.48 0.71 -11.82 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 6 H -0.27 -10.55 7.11 99.48 0.71 -9.85 16 7 C -0.64 -32.17 8.24 25.60 0.21 -31.96 16 8 H 0.05 2.70 7.77 -2.91 -0.02 2.67 16 9 C 0.22 9.91 0.69 -10.15 -0.01 9.91 16 10 O -0.58 -26.93 11.41 -148.98 -1.70 -28.63 16 11 C -0.11 -4.67 5.65 31.78 0.18 -4.49 16 12 C 0.12 4.36 5.49 86.73 0.48 4.83 16 13 N -0.57 -20.30 3.33 -813.24 -2.71 -23.01 16 14 C 0.52 16.61 7.81 87.27 0.68 17.29 16 15 O -0.53 -17.08 13.37 -3.26 -0.04 -17.12 16 16 C 0.52 14.83 7.71 87.27 0.67 15.51 16 17 O -0.52 -16.63 13.68 -3.23 -0.04 -16.67 16 18 N -0.58 -13.20 3.03 -819.73 -2.48 -15.68 16 19 C 0.01 0.24 6.47 86.22 0.56 0.80 16 20 C 0.06 0.90 6.97 71.94 0.50 1.40 16 21 O -0.37 -7.42 9.92 -129.97 -1.29 -8.71 16 22 C 0.09 1.52 3.30 29.95 0.10 1.62 16 23 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 24 C 0.50 8.63 7.66 71.24 0.55 9.18 16 25 O -0.53 -12.85 17.27 28.38 0.49 -12.36 16 26 O -0.50 -5.28 13.42 -51.40 -0.69 -5.97 16 27 C 0.09 1.70 5.89 86.35 0.51 2.20 16 28 C 0.10 3.67 6.07 86.85 0.53 4.19 16 29 H 0.28 16.04 4.95 -92.71 -0.46 15.58 16 30 H 0.37 15.32 9.10 -74.06 -0.67 14.65 16 31 H 0.06 2.80 7.06 -2.39 -0.02 2.78 16 32 H 0.08 3.31 8.03 -2.39 -0.02 3.29 16 33 H 0.07 2.45 7.73 -2.38 -0.02 2.43 16 34 H 0.09 2.82 7.57 -2.39 -0.02 2.81 16 35 H 0.16 3.65 3.82 -75.89 -0.29 3.36 16 36 H 0.08 1.53 8.14 -2.39 -0.02 1.52 16 37 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.44 0.73 9.10 -74.06 -0.67 0.05 16 40 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.12 2.20 7.14 -2.39 -0.02 2.19 16 42 H 0.08 3.00 8.01 -2.39 -0.02 2.98 16 43 H 0.07 2.82 8.04 -2.39 -0.02 2.80 16 Total: -1.00 -68.78 356.32 -0.94 -69.72 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: -0.22 Total: 31.18 kcal Atomic # 6 Polarization: 25.28 SS G_CDS: 5.40 Total: 30.68 kcal Atomic # 7 Polarization: -85.71 SS G_CDS: -4.90 Total: -90.60 kcal Atomic # 8 Polarization: -86.19 SS G_CDS: -3.28 Total: -89.47 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.05 Total: 48.50 kcal Total: -68.78 -0.94 -69.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606337.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.619 kcal (2) G-P(sol) polarization free energy of solvation -68.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -237.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds