Wall clock time and date at job start Wed Apr 1 2020 00:26:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00289 * 2 1 4 4 H 1.48499 * 109.46952 * 269.99753 * 3 2 1 5 5 H 1.48499 * 109.47147 * 29.99472 * 3 2 1 6 6 H 1.48501 * 109.47117 * 149.99625 * 3 2 1 7 7 C 1.37884 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99650 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99770 * 0.02562 * 7 2 1 10 10 O 1.42895 * 110.91663 * 297.54793 * 9 7 2 11 11 C 1.55449 * 111.11352 * 173.55722 * 9 7 2 12 12 C 1.54324 * 102.96706 * 206.46611 * 11 9 7 13 13 N 1.47024 * 107.27045 * 22.19152 * 12 11 9 14 14 C 1.34784 * 125.64661 * 181.04155 * 13 12 11 15 15 O 1.21348 * 119.99586 * 180.02562 * 14 13 12 16 16 C 1.49450 * 119.99942 * 0.02562 * 14 13 12 17 17 O 1.21352 * 120.00056 * 6.67329 * 16 14 13 18 18 N 1.34773 * 119.99947 * 186.67132 * 16 14 13 19 19 C 1.47155 * 120.98098 * 7.66251 * 18 16 14 20 20 C 1.53709 * 108.16553 * 129.43036 * 19 18 16 21 21 O 1.42961 * 109.14896 * 52.53317 * 20 19 18 22 22 C 1.42965 * 114.16870 * 297.29446 * 21 20 19 23 23 H 1.09003 * 109.50703 * 302.65596 * 22 21 20 24 24 C 1.50693 * 109.55381 * 182.52988 * 22 21 20 25 25 O 1.20829 * 120.00421 * 355.22515 * 24 22 21 26 26 O 1.34236 * 119.99888 * 175.22758 * 24 22 21 27 27 C 1.47148 * 120.98674 * 187.93678 * 18 16 14 28 28 C 1.47418 * 108.70689 * 1.05832 * 13 12 11 29 29 H 0.97003 * 119.99424 * 0.02562 * 1 2 3 30 30 H 0.96696 * 114.00030 * 62.45490 * 10 9 7 31 31 H 1.08992 * 110.71047 * 88.09389 * 11 9 7 32 32 H 1.09007 * 110.85832 * 324.90592 * 11 9 7 33 33 H 1.09002 * 109.88298 * 262.77642 * 12 11 9 34 34 H 1.09004 * 110.01321 * 141.67637 * 12 11 9 35 35 H 1.09006 * 109.68088 * 249.20866 * 19 18 16 36 36 H 1.09001 * 109.68218 * 9.75840 * 19 18 16 37 37 H 1.09006 * 109.65663 * 292.57417 * 20 19 18 38 38 H 1.09002 * 109.49134 * 172.39887 * 20 19 18 39 39 H 0.96705 * 116.99977 * 179.97438 * 26 24 22 40 40 H 1.09009 * 109.68022 * 350.24287 * 27 18 16 41 41 H 1.09000 * 109.68594 * 110.75140 * 27 18 16 42 42 H 1.09004 * 110.36565 * 94.71010 * 28 13 12 43 43 H 1.08996 * 110.37381 * 216.92676 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.4607 -2.6320 1.1837 11 6 2.2188 -3.7047 -0.1615 12 6 1.3242 -4.7824 -0.8095 13 7 0.2046 -4.0866 -1.4606 14 6 -0.8097 -4.6781 -2.1224 15 8 -1.6837 -4.0015 -2.6233 16 6 -0.8580 -6.1673 -2.2392 17 8 -0.0542 -6.8494 -1.6381 18 7 -1.7943 -6.7526 -3.0119 19 6 -2.6710 -5.9495 -3.8791 20 6 -2.6278 -6.5510 -5.2929 21 8 -2.9184 -7.9487 -5.2170 22 6 -1.9685 -8.7039 -4.4612 23 1 -0.9743 -8.5688 -4.8873 24 6 -2.3389 -10.1640 -4.5006 25 8 -3.3623 -10.5135 -5.0395 26 8 -1.5318 -11.0766 -3.9369 27 6 -1.9741 -8.2130 -3.0091 28 6 0.3752 -2.6347 -1.2701 29 1 -0.4849 0.8401 -0.0004 30 1 -0.2256 -1.9571 1.2761 31 1 2.5837 -4.0393 0.8094 32 1 3.0510 -3.4489 -0.8175 33 1 0.9450 -5.4590 -0.0436 34 1 1.8933 -5.3434 -1.5508 35 1 -3.6912 -5.9773 -3.4963 36 1 -2.3165 -4.9191 -3.9062 37 1 -1.6360 -6.4082 -5.7220 38 1 -3.3704 -6.0583 -5.9206 39 1 -1.8117 -12.0009 -3.9870 40 1 -1.1579 -8.6824 -2.4597 41 1 -2.9250 -8.4649 -2.5395 42 1 0.8831 -2.1966 -2.1293 43 1 -0.5918 -2.1558 -1.1172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594606345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:05 Heat of formation + Delta-G solvation = -214.641671 kcal Electronic energy + Delta-G solvation = -31014.981119 eV Core-core repulsion = 26447.900537 eV Total energy + Delta-G solvation = -4567.080582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.23843 -40.48388 -39.18111 -38.17718 -37.43173 -36.50708 -35.17122 -34.17856 -32.31436 -32.26195 -30.34552 -28.66854 -28.01688 -26.46409 -25.39250 -23.91623 -22.99788 -21.91401 -21.10854 -19.77213 -19.20221 -18.56770 -17.59310 -17.32660 -17.02092 -16.71856 -16.60257 -16.40574 -15.95677 -15.69694 -15.20363 -14.96279 -14.73115 -14.61977 -14.46590 -14.26945 -13.51594 -13.21928 -13.16816 -13.06263 -12.89967 -12.59056 -12.36215 -12.02992 -11.91133 -11.73743 -11.60595 -11.34412 -11.11469 -11.02315 -10.91501 -10.77833 -10.62543 -10.54939 -10.52915 -10.26804 -9.44200 -9.11590 -8.90838 -8.75707 -8.48136 -8.02612 -6.35979 -4.45539 1.56428 1.68375 2.08791 2.29740 3.15792 3.24244 3.26974 3.35511 3.47965 3.68585 4.12007 4.20304 4.39816 4.42652 4.67026 4.68969 4.90257 4.91457 5.02384 5.20305 5.29805 5.39039 5.47772 5.70062 5.72828 5.80829 5.95042 6.01285 6.05149 6.21051 6.42333 6.52548 6.65159 6.71282 6.74967 6.88483 7.09237 7.22307 7.45555 7.59264 7.66077 7.90090 7.93342 8.26969 8.58835 9.21678 9.30300 10.71204 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.026640 B = 0.002550 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.792001 B =10976.353936 C =11608.895129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.071 3.929 3 Si 0.905 3.095 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.249 3.751 10 O -0.581 6.581 11 C -0.121 4.121 12 C 0.108 3.892 13 N -0.568 5.568 14 C 0.510 3.490 15 O -0.529 6.529 16 C 0.516 3.484 17 O -0.510 6.510 18 N -0.595 5.595 19 C 0.038 3.962 20 C 0.049 3.951 21 O -0.359 6.359 22 C 0.090 3.910 23 H 0.105 0.895 24 C 0.491 3.509 25 O -0.489 6.489 26 O -0.508 6.508 27 C 0.090 3.910 28 C 0.090 3.910 29 H 0.271 0.729 30 H 0.381 0.619 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.081 0.919 36 H 0.155 0.845 37 H 0.062 0.938 38 H 0.119 0.881 39 H 0.417 0.583 40 H 0.118 0.882 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.682 -15.350 -8.553 17.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.133 4.133 3 Si 0.732 3.268 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.087 0.913 9 C 0.208 3.792 10 O -0.389 6.389 11 C -0.159 4.159 12 C -0.014 4.014 13 N -0.299 5.299 14 C 0.293 3.707 15 O -0.410 6.410 16 C 0.299 3.701 17 O -0.384 6.384 18 N -0.331 5.331 19 C -0.083 4.083 20 C -0.028 4.028 21 O -0.277 6.277 22 C 0.030 3.970 23 H 0.122 0.878 24 C 0.330 3.670 25 O -0.375 6.375 26 O -0.321 6.321 27 C -0.033 4.033 28 C -0.030 4.030 29 H 0.081 0.919 30 H 0.231 0.769 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.172 0.828 37 H 0.080 0.920 38 H 0.137 0.863 39 H 0.277 0.723 40 H 0.136 0.864 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.816 -15.543 -8.617 17.993 hybrid contribution -0.112 0.791 -0.155 0.814 sum -2.929 -14.752 -8.772 17.411 Atomic orbital electron populations 1.69705 1.06000 1.28034 1.49455 1.25091 0.95073 0.99837 0.93253 0.86376 0.79830 0.82276 0.78287 1.20406 1.20975 1.19651 1.21448 0.93738 0.89833 1.52483 0.91343 1.19691 0.86544 0.91857 0.81063 1.86135 1.51472 1.57111 1.44197 1.22755 0.97562 0.95086 1.00520 1.22205 0.87271 0.95284 0.96668 1.48724 1.21696 1.10709 1.48778 1.19429 0.82690 0.87401 0.81158 1.90472 1.37684 1.64853 1.47970 1.20451 0.80532 0.89633 0.79446 1.90738 1.37957 1.65121 1.44580 1.47885 1.35612 1.06362 1.43194 1.23650 0.95859 1.00042 0.88753 1.23346 1.02669 0.79698 0.97054 1.88018 1.48120 1.19761 1.71818 1.21634 0.94921 0.86219 0.94233 0.87794 1.22564 0.81096 0.88327 0.75003 1.90764 1.25048 1.81401 1.40254 1.84493 1.52491 1.21910 1.73252 1.22139 1.05062 0.81316 0.94799 1.23561 1.03404 0.75318 1.00762 0.91918 0.76894 0.90443 0.90286 0.90792 0.91803 0.90079 0.82833 0.92006 0.86343 0.72267 0.86416 0.89684 0.91189 0.88905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.70 10.69 55.43 0.59 -22.11 16 2 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 3 Si 0.91 19.59 29.54 -169.99 -5.02 14.57 16 4 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.54 -13.34 8.28 -34.44 -0.29 -13.62 16 8 H 0.07 1.67 7.79 -52.49 -0.41 1.26 16 9 C 0.25 5.76 0.88 -89.46 -0.08 5.68 16 10 O -0.58 -14.26 13.16 -35.23 -0.46 -14.73 16 11 C -0.12 -2.35 6.14 -24.74 -0.15 -2.50 16 12 C 0.11 1.97 5.51 -3.06 -0.02 1.95 16 13 N -0.57 -11.23 3.33 -171.02 -0.57 -11.80 16 14 C 0.51 9.44 7.77 -11.58 -0.09 9.35 16 15 O -0.53 -10.26 13.46 5.50 0.07 -10.18 16 16 C 0.52 8.24 7.70 -11.59 -0.09 8.15 16 17 O -0.51 -8.68 13.65 5.50 0.07 -8.60 16 18 N -0.59 -7.73 3.01 -172.53 -0.52 -8.25 16 19 C 0.04 0.45 6.16 -3.32 -0.02 0.43 16 20 C 0.05 0.46 7.00 37.53 0.26 0.73 16 21 O -0.36 -4.08 9.93 -55.09 -0.55 -4.62 16 22 C 0.09 0.90 3.30 -27.74 -0.09 0.81 16 23 H 0.10 0.91 8.14 -51.93 -0.42 0.48 16 24 C 0.49 4.83 7.66 36.00 0.28 5.11 16 25 O -0.49 -6.44 17.27 -25.45 -0.44 -6.87 16 26 O -0.51 -3.43 13.42 -39.27 -0.53 -3.95 16 27 C 0.09 0.97 5.92 -3.54 -0.02 0.95 16 28 C 0.09 2.01 5.38 -2.53 -0.01 2.00 16 29 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 30 H 0.38 9.54 7.57 45.56 0.34 9.89 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.08 1.42 8.04 -51.92 -0.42 1.00 16 33 H 0.07 1.37 7.44 -51.93 -0.39 0.99 16 34 H 0.06 1.05 7.84 -51.93 -0.41 0.64 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.16 2.07 4.48 -54.02 -0.24 1.83 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.12 0.88 8.14 -51.93 -0.42 0.45 16 39 H 0.42 0.95 9.10 45.56 0.41 1.36 16 40 H 0.12 1.26 7.07 -51.92 -0.37 0.90 16 41 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 1.59 8.03 -51.93 -0.42 1.17 16 43 H 0.09 2.31 7.32 -51.93 -0.38 1.92 16 LS Contribution 357.61 15.07 5.39 5.39 Total: -1.00 -30.73 357.61 -6.31 -37.04 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: -3.94 Total: 13.43 kcal Atomic # 6 Polarization: 21.11 SS G_CDS: -0.41 Total: 20.69 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: -0.50 Total: -42.16 kcal Atomic # 8 Polarization: -47.14 SS G_CDS: -1.83 Total: -48.97 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.73 -6.31 -37.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.602 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds