Wall clock time and date at job start Wed Apr 1 2020 00:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00289 * 2 1 4 4 H 1.48499 * 109.46952 * 269.99753 * 3 2 1 5 5 H 1.48499 * 109.47147 * 29.99472 * 3 2 1 6 6 H 1.48501 * 109.47117 * 149.99625 * 3 2 1 7 7 C 1.37884 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99650 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99770 * 0.02562 * 7 2 1 10 10 O 1.42895 * 110.91663 * 297.54793 * 9 7 2 11 11 C 1.55449 * 111.11352 * 173.55722 * 9 7 2 12 12 C 1.54324 * 102.96706 * 206.46611 * 11 9 7 13 13 N 1.47024 * 107.27045 * 22.19152 * 12 11 9 14 14 C 1.34784 * 125.64661 * 181.04155 * 13 12 11 15 15 O 1.21348 * 119.99586 * 180.02562 * 14 13 12 16 16 C 1.49450 * 119.99942 * 0.02562 * 14 13 12 17 17 O 1.21352 * 120.00056 * 6.67329 * 16 14 13 18 18 N 1.34773 * 119.99947 * 186.67132 * 16 14 13 19 19 C 1.47155 * 120.98098 * 7.66251 * 18 16 14 20 20 C 1.53709 * 108.16553 * 129.43036 * 19 18 16 21 21 O 1.42961 * 109.14896 * 52.53317 * 20 19 18 22 22 C 1.42965 * 114.16870 * 297.29446 * 21 20 19 23 23 H 1.09003 * 109.50703 * 302.65596 * 22 21 20 24 24 C 1.50693 * 109.55381 * 182.52988 * 22 21 20 25 25 O 1.20829 * 120.00421 * 355.22515 * 24 22 21 26 26 O 1.34236 * 119.99888 * 175.22758 * 24 22 21 27 27 C 1.47148 * 120.98674 * 187.93678 * 18 16 14 28 28 C 1.47418 * 108.70689 * 1.05832 * 13 12 11 29 29 H 0.97003 * 119.99424 * 0.02562 * 1 2 3 30 30 H 0.96696 * 114.00030 * 62.45490 * 10 9 7 31 31 H 1.08992 * 110.71047 * 88.09389 * 11 9 7 32 32 H 1.09007 * 110.85832 * 324.90592 * 11 9 7 33 33 H 1.09002 * 109.88298 * 262.77642 * 12 11 9 34 34 H 1.09004 * 110.01321 * 141.67637 * 12 11 9 35 35 H 1.09006 * 109.68088 * 249.20866 * 19 18 16 36 36 H 1.09001 * 109.68218 * 9.75840 * 19 18 16 37 37 H 1.09006 * 109.65663 * 292.57417 * 20 19 18 38 38 H 1.09002 * 109.49134 * 172.39887 * 20 19 18 39 39 H 0.96705 * 116.99977 * 179.97438 * 26 24 22 40 40 H 1.09009 * 109.68022 * 350.24287 * 27 18 16 41 41 H 1.09000 * 109.68594 * 110.75140 * 27 18 16 42 42 H 1.09004 * 110.36565 * 94.71010 * 28 13 12 43 43 H 1.08996 * 110.37381 * 216.92676 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 0.4607 -2.6320 1.1837 11 6 2.2188 -3.7047 -0.1615 12 6 1.3242 -4.7824 -0.8095 13 7 0.2046 -4.0866 -1.4606 14 6 -0.8097 -4.6781 -2.1224 15 8 -1.6837 -4.0015 -2.6233 16 6 -0.8580 -6.1673 -2.2392 17 8 -0.0542 -6.8494 -1.6381 18 7 -1.7943 -6.7526 -3.0119 19 6 -2.6710 -5.9495 -3.8791 20 6 -2.6278 -6.5510 -5.2929 21 8 -2.9184 -7.9487 -5.2170 22 6 -1.9685 -8.7039 -4.4612 23 1 -0.9743 -8.5688 -4.8873 24 6 -2.3389 -10.1640 -4.5006 25 8 -3.3623 -10.5135 -5.0395 26 8 -1.5318 -11.0766 -3.9369 27 6 -1.9741 -8.2130 -3.0091 28 6 0.3752 -2.6347 -1.2701 29 1 -0.4849 0.8401 -0.0004 30 1 -0.2256 -1.9571 1.2761 31 1 2.5837 -4.0393 0.8094 32 1 3.0510 -3.4489 -0.8175 33 1 0.9450 -5.4590 -0.0436 34 1 1.8933 -5.3434 -1.5508 35 1 -3.6912 -5.9773 -3.4963 36 1 -2.3165 -4.9191 -3.9062 37 1 -1.6360 -6.4082 -5.7220 38 1 -3.3704 -6.0583 -5.9206 39 1 -1.8117 -12.0009 -3.9870 40 1 -1.1579 -8.6824 -2.4597 41 1 -2.9250 -8.4649 -2.5395 42 1 0.8831 -2.1966 -2.1293 43 1 -0.5918 -2.1558 -1.1172 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594606345.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:04 Heat of formation + Delta-G solvation = -239.468186 kcal Electronic energy + Delta-G solvation = -31016.057677 eV Core-core repulsion = 26447.900537 eV Total energy + Delta-G solvation = -4568.157141 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 342.140 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.31064 -41.49545 -40.36616 -39.34576 -38.98644 -37.23460 -36.47470 -35.65524 -34.23267 -33.10351 -31.96501 -29.76243 -29.59258 -27.82208 -26.74007 -25.18617 -24.12887 -23.06555 -22.08105 -21.50242 -20.44534 -19.34284 -19.12813 -18.58888 -18.34534 -17.77474 -17.49347 -17.37792 -17.24315 -17.01682 -16.91716 -16.25047 -16.01072 -15.75152 -15.64742 -15.17680 -14.94176 -14.79063 -14.66838 -14.37650 -14.03630 -13.80576 -13.64242 -13.51690 -13.29995 -12.85197 -12.82697 -12.65421 -12.59887 -12.42122 -12.31626 -12.21859 -12.09783 -12.00690 -11.68823 -11.45988 -11.18835 -10.68889 -10.47819 -10.24358 -9.95761 -9.62696 -8.24465 -6.40764 0.22633 0.83777 1.13662 1.44127 1.45022 1.47590 1.56416 1.98952 2.18454 2.40497 2.90197 3.00285 3.02836 3.32927 3.65273 3.76944 3.83112 4.01240 4.05436 4.11202 4.15390 4.18996 4.32362 4.38015 4.47533 4.66905 4.67382 4.74600 4.86257 4.95103 5.03898 5.07881 5.21593 5.34729 5.44318 5.45056 5.72676 5.75505 5.79432 6.05609 6.23832 6.49282 6.67539 6.82074 6.86874 7.27916 7.36048 8.80995 Molecular weight = 342.14amu Principal moments of inertia in cm(-1) A = 0.026640 B = 0.002550 C = 0.002411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.792001 B =10976.353936 C =11608.895129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.029 3.971 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.554 4.554 8 H 0.069 0.931 9 C 0.232 3.768 10 O -0.588 6.588 11 C -0.115 4.115 12 C 0.117 3.883 13 N -0.578 5.578 14 C 0.505 3.495 15 O -0.543 6.543 16 C 0.522 3.478 17 O -0.521 6.521 18 N -0.586 5.586 19 C 0.037 3.963 20 C 0.055 3.945 21 O -0.373 6.373 22 C 0.089 3.911 23 H 0.121 0.879 24 C 0.502 3.498 25 O -0.527 6.527 26 O -0.498 6.498 27 C 0.092 3.908 28 C 0.106 3.894 29 H 0.270 0.730 30 H 0.374 0.626 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.137 0.863 37 H 0.072 0.928 38 H 0.141 0.859 39 H 0.438 0.562 40 H 0.122 0.878 41 H 0.092 0.908 42 H 0.060 0.940 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.930 -16.679 -9.398 19.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.172 4.172 3 Si 0.789 3.211 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.592 4.592 8 H 0.087 0.913 9 C 0.192 3.808 10 O -0.396 6.396 11 C -0.153 4.153 12 C -0.005 4.005 13 N -0.310 5.310 14 C 0.289 3.711 15 O -0.424 6.424 16 C 0.305 3.695 17 O -0.397 6.397 18 N -0.320 5.320 19 C -0.084 4.084 20 C -0.021 4.021 21 O -0.292 6.292 22 C 0.029 3.971 23 H 0.138 0.862 24 C 0.343 3.657 25 O -0.415 6.415 26 O -0.313 6.313 27 C -0.031 4.031 28 C -0.015 4.015 29 H 0.079 0.921 30 H 0.223 0.777 31 H 0.102 0.898 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.154 0.846 37 H 0.091 0.909 38 H 0.158 0.842 39 H 0.302 0.698 40 H 0.140 0.860 41 H 0.110 0.890 42 H 0.078 0.922 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.063 -16.929 -9.474 19.509 hybrid contribution -0.393 1.146 0.099 1.215 sum -2.456 -15.783 -9.375 18.521 Atomic orbital electron populations 1.69812 1.07015 1.28482 1.49901 1.25779 0.95767 1.02634 0.93020 0.85469 0.78654 0.78753 0.78233 1.20018 1.21117 1.19309 1.21738 0.93975 0.90921 1.52575 0.91272 1.19931 0.87159 0.93069 0.80670 1.86128 1.51444 1.56828 1.45193 1.22763 0.97387 0.93749 1.01414 1.22199 0.86689 0.94634 0.97010 1.48727 1.22860 1.09669 1.49697 1.20002 0.81942 0.88849 0.80315 1.90491 1.37956 1.65818 1.48133 1.19850 0.81409 0.88074 0.80210 1.90732 1.38767 1.64728 1.45492 1.47913 1.34483 1.07596 1.42030 1.23641 0.95477 0.99185 0.90071 1.23417 1.04137 0.78987 0.95599 1.88019 1.48851 1.20421 1.71911 1.21710 0.95539 0.86353 0.93449 0.86154 1.22451 0.80484 0.88562 0.74205 1.90760 1.26652 1.81978 1.42124 1.84454 1.51550 1.23181 1.72133 1.22279 1.05606 0.79448 0.95726 1.23077 1.01331 0.76997 1.00140 0.92051 0.77702 0.89829 0.88794 0.91126 0.89503 0.89710 0.84610 0.90948 0.84183 0.69845 0.86002 0.88955 0.92152 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.32 10.69 21.45 0.23 -47.09 16 2 C 0.03 1.47 5.29 84.66 0.45 1.91 16 3 Si 0.96 40.15 29.54 68.60 2.03 42.18 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 5 H -0.29 -11.87 7.11 99.48 0.71 -11.16 16 6 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 7 C -0.55 -27.61 8.28 25.60 0.21 -27.40 16 8 H 0.07 3.35 7.79 -2.91 -0.02 3.33 16 9 C 0.23 10.80 0.88 -10.04 -0.01 10.79 16 10 O -0.59 -29.41 13.16 -148.98 -1.96 -31.37 16 11 C -0.12 -4.35 6.14 31.89 0.20 -4.15 16 12 C 0.12 4.09 5.51 86.73 0.48 4.57 16 13 N -0.58 -22.81 3.33 -813.36 -2.71 -25.52 16 14 C 0.51 18.59 7.77 87.27 0.68 19.27 16 15 O -0.54 -21.28 13.46 -3.24 -0.04 -21.33 16 16 C 0.52 16.04 7.70 87.27 0.67 16.71 16 17 O -0.52 -16.87 13.65 -3.25 -0.04 -16.91 16 18 N -0.59 -14.29 3.01 -818.12 -2.47 -16.75 16 19 C 0.04 0.82 6.16 86.49 0.53 1.36 16 20 C 0.05 0.92 7.00 72.22 0.51 1.43 16 21 O -0.37 -7.69 9.93 -129.99 -1.29 -8.98 16 22 C 0.09 1.58 3.30 29.94 0.10 1.67 16 23 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 24 C 0.50 8.81 7.66 71.23 0.55 9.35 16 25 O -0.53 -13.08 17.27 28.36 0.49 -12.59 16 26 O -0.50 -5.35 13.42 -51.48 -0.69 -6.04 16 27 C 0.09 1.77 5.92 86.35 0.51 2.28 16 28 C 0.11 4.86 5.38 86.86 0.47 5.33 16 29 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 30 H 0.37 19.39 7.57 -74.06 -0.56 18.83 16 31 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.09 3.23 8.04 -2.38 -0.02 3.21 16 33 H 0.07 2.54 7.44 -2.39 -0.02 2.52 16 34 H 0.09 2.66 7.84 -2.39 -0.02 2.64 16 35 H 0.08 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.14 3.60 4.48 -35.58 -0.16 3.44 16 37 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.14 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.44 0.77 9.10 -74.05 -0.67 0.10 16 40 H 0.12 2.31 7.07 -2.38 -0.02 2.29 16 41 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.06 2.81 8.03 -2.38 -0.02 2.79 16 43 H 0.06 3.15 7.32 -2.39 -0.02 3.14 16 Total: -1.00 -65.84 357.61 -1.41 -67.25 By element: Atomic # 1 Polarization: 34.32 SS G_CDS: -0.29 Total: 34.02 kcal Atomic # 6 Polarization: 37.79 SS G_CDS: 5.34 Total: 43.12 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -4.94 Total: -89.37 kcal Atomic # 8 Polarization: -93.67 SS G_CDS: -3.54 Total: -97.21 kcal Atomic # 14 Polarization: 40.15 SS G_CDS: 2.03 Total: 42.18 kcal Total: -65.84 -1.41 -67.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594606345.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.218 kcal (2) G-P(sol) polarization free energy of solvation -65.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds