Wall clock time and date at job start Wed Apr 1 2020 01:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39733 * 125.77384 * 2 1 4 4 C 1.36153 * 107.85399 * 180.15483 * 3 2 1 5 5 N 1.39359 * 126.26080 * 179.88365 * 4 3 2 6 6 C 1.34784 * 119.99963 * 359.68158 * 5 4 3 7 7 O 1.21575 * 119.99895 * 0.02562 * 6 5 4 8 8 C 1.47803 * 119.99976 * 180.02562 * 6 5 4 9 9 C 1.39735 * 119.43987 * 179.72980 * 8 6 5 10 10 C 1.36988 * 119.59263 * 180.25609 * 9 8 6 11 11 C 1.39903 * 118.37140 * 0.03535 * 10 9 8 12 12 N 1.35433 * 133.68277 * 179.97438 * 11 10 9 13 13 C 1.30926 * 109.56762 * 179.97438 * 12 11 10 14 14 O 1.35178 * 124.99726 * 180.02562 * 13 12 11 15 15 N 1.36390 * 110.00870 * 359.97438 * 13 12 11 16 16 H 0.96994 * 126.32452 * 179.97438 * 15 13 12 17 17 C 1.38257 * 107.35626 * 0.02562 * 15 13 12 18 18 N 1.31770 * 133.70597 * 180.02562 * 17 15 13 19 19 N 1.35811 * 107.47659 * 359.61194 * 4 3 2 20 20 C 1.46495 * 126.09801 * 180.22111 * 19 4 3 21 21 C 1.50698 * 109.47291 * 90.00172 * 20 19 4 22 22 H 1.08004 * 119.99549 * 0.02562 * 21 20 19 23 23 C 1.37879 * 120.00208 * 180.02562 * 21 20 19 24 24 N 1.31513 * 119.99882 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99837 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47270 * 90.00061 * 25 23 21 27 27 H 1.48502 * 109.47095 * 210.00266 * 25 23 21 28 28 H 1.48503 * 109.47169 * 330.00043 * 25 23 21 29 29 N 1.30825 * 125.78013 * 179.71761 * 2 1 3 30 30 H 1.09001 * 109.46979 * 270.24865 * 1 2 3 31 31 H 1.08991 * 109.47191 * 30.25237 * 1 2 3 32 32 H 1.09000 * 109.46989 * 150.25802 * 1 2 3 33 33 H 1.07992 * 126.07036 * 0.02629 * 3 2 1 34 34 H 0.96998 * 120.00387 * 179.68691 * 5 4 3 35 35 H 1.07998 * 120.20452 * 0.22954 * 9 8 6 36 36 H 1.08004 * 120.81696 * 180.02562 * 10 9 8 37 37 H 0.96701 * 114.00702 * 89.97270 * 14 13 12 38 38 H 1.09000 * 109.47447 * 210.00179 * 20 19 4 39 39 H 1.09000 * 109.47029 * 330.00140 * 20 19 4 40 40 H 0.96996 * 119.99421 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1337 0.0000 4 6 3.6194 0.7148 -0.0035 5 7 4.7494 1.5304 -0.0070 6 6 4.6127 2.8712 -0.0135 7 8 3.5036 3.3692 -0.0160 8 6 5.8112 3.7362 -0.0178 9 6 5.6559 5.1249 -0.0303 10 6 6.7645 5.9295 -0.0396 11 6 8.0256 5.3237 -0.0370 12 7 9.2929 5.8015 -0.0442 13 6 10.1384 4.8020 -0.0364 14 8 11.4846 4.9252 -0.0399 15 7 9.4614 3.6181 -0.0231 16 1 9.8545 2.7314 -0.0157 17 6 8.1111 3.9151 -0.0233 18 7 7.0172 3.1805 -0.0133 19 7 3.6089 -0.6433 0.0031 20 6 4.7859 -1.5155 0.0069 21 6 5.1901 -1.8077 1.4290 22 1 4.6262 -1.3861 2.2481 23 6 6.2796 -2.6131 1.6844 24 7 6.9665 -3.1259 0.6870 25 14 6.7801 -2.9758 3.4472 26 1 6.0798 -4.1972 3.9193 27 1 8.2481 -3.1911 3.5107 28 1 6.4105 -1.8273 4.3130 29 7 2.2719 -1.0613 0.0052 30 1 -0.3633 0.0045 1.0277 31 1 -0.3633 0.8876 -0.5177 32 1 -0.3633 -0.8923 -0.5098 33 1 1.9874 2.1598 0.0004 34 1 5.6343 1.1331 -0.0047 35 1 4.6680 5.5611 -0.0331 36 1 6.6675 7.0051 -0.0490 37 1 11.8779 4.9697 0.8424 38 1 4.5478 -2.4494 -0.5023 39 1 5.6075 -1.0193 -0.5097 40 1 7.7331 -3.6922 0.8668 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597099953.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:56 Heat of formation + Delta-G solvation = 101.305076 kcal Electronic energy + Delta-G solvation = -28512.211026 eV Core-core repulsion = 24330.725345 eV Total energy + Delta-G solvation = -4181.485681 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.123 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.76864 -40.90982 -39.76926 -38.60612 -37.18128 -34.87320 -34.13964 -33.75556 -32.09228 -31.65446 -30.21143 -29.07990 -28.09887 -26.03483 -24.94660 -23.78582 -22.86718 -22.19021 -21.72091 -19.93880 -19.82529 -19.36302 -18.34269 -17.81174 -17.38900 -16.85719 -16.45098 -16.42359 -15.47757 -15.27186 -15.16264 -14.81280 -14.52535 -14.13860 -13.99995 -13.65271 -13.54356 -12.88252 -12.78639 -12.63251 -12.54849 -12.49564 -12.03393 -11.78848 -11.66961 -11.58055 -11.42092 -11.09493 -10.90978 -10.42233 -10.37110 -10.24463 -9.82110 -9.68744 -9.53716 -9.33822 -8.82723 -8.72612 -7.91201 -7.45885 -6.33917 -4.41787 0.01008 0.85759 1.63687 1.93525 2.40718 2.70849 3.02232 3.11966 3.14624 3.21379 3.26111 3.48621 3.70232 3.74110 3.85388 4.13620 4.23433 4.44708 4.63023 4.69161 4.99551 5.22430 5.33120 5.35782 5.58071 5.64312 5.70007 6.04396 6.06977 6.12935 6.15919 6.17689 6.27094 6.38824 6.63274 6.84626 6.95922 7.03788 7.13051 7.30638 7.51161 7.57455 7.62323 7.79437 7.85483 8.22744 8.60957 8.70146 9.25293 10.73320 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.008412 B = 0.003822 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3327.588270 B = 7323.851680 C =10149.678426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.290 4.290 4 C 0.298 3.702 5 N -0.618 5.618 6 C 0.580 3.420 7 O -0.503 6.503 8 C 0.128 3.872 9 C -0.115 4.115 10 C -0.027 4.027 11 C 0.038 3.962 12 N -0.481 5.481 13 C 0.479 3.521 14 O -0.437 6.437 15 N -0.584 5.584 16 H 0.434 0.566 17 C 0.251 3.749 18 N -0.445 5.445 19 N -0.344 5.344 20 C 0.257 3.743 21 C -0.538 4.538 22 H 0.065 0.935 23 C 0.067 3.933 24 N -0.890 5.890 25 Si 0.905 3.095 26 H -0.276 1.276 27 H -0.284 1.284 28 H -0.272 1.272 29 N -0.281 5.281 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.163 0.837 34 H 0.426 0.574 35 H 0.164 0.836 36 H 0.154 0.846 37 H 0.416 0.584 38 H 0.057 0.943 39 H 0.045 0.955 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.553 17.113 -1.225 17.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.322 4.322 4 C 0.076 3.924 5 N -0.264 5.264 6 C 0.365 3.635 7 O -0.376 6.376 8 C -0.021 4.021 9 C -0.138 4.138 10 C -0.054 4.054 11 C -0.084 4.084 12 N -0.213 5.213 13 C 0.173 3.827 14 O -0.239 6.239 15 N -0.211 5.211 16 H 0.275 0.725 17 C 0.012 3.988 18 N -0.160 5.160 19 N -0.130 5.130 20 C 0.139 3.861 21 C -0.577 4.577 22 H 0.083 0.917 23 C -0.136 4.136 24 N -0.528 5.528 25 Si 0.732 3.268 26 H -0.201 1.201 27 H -0.209 1.209 28 H -0.197 1.197 29 N -0.107 5.107 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.180 0.820 34 H 0.264 0.736 35 H 0.181 0.819 36 H 0.172 0.828 37 H 0.276 0.724 38 H 0.075 0.925 39 H 0.062 0.938 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.518 15.982 -1.870 16.713 hybrid contribution 1.496 -0.331 1.467 2.121 sum 6.014 15.651 -0.403 16.772 Atomic orbital electron populations 1.20023 0.87518 1.02365 1.02178 1.22021 0.96553 0.90976 1.01965 1.21276 0.88974 1.00513 1.21442 1.18015 0.87804 0.83402 1.03226 1.42517 1.09023 1.05167 1.69705 1.17474 0.87564 0.81069 0.77407 1.90750 1.24473 1.73951 1.48376 1.20663 0.88909 0.92186 1.00318 1.21570 1.00862 0.92139 0.99234 1.20447 0.87688 1.01259 0.96009 1.19691 0.92851 0.91028 1.04833 1.70664 0.98761 1.27846 1.24009 1.20225 0.84974 0.80278 0.97192 1.84823 1.10601 1.93407 1.35053 1.43108 1.04299 1.10764 1.62969 0.72508 1.18383 0.84746 0.91241 1.04420 1.66181 0.96300 1.40518 1.13039 1.49510 1.06485 1.02028 1.55011 1.19632 0.77855 0.89715 0.98915 1.21344 1.13266 1.31717 0.91345 0.91690 1.24920 0.95685 0.94923 0.98100 1.69923 1.19204 1.32606 1.31063 0.86371 0.77564 0.79092 0.83773 1.20140 1.20931 1.19724 1.77336 0.86134 1.21856 1.25352 0.91294 0.91085 0.91557 0.81961 0.73576 0.81885 0.82823 0.72397 0.92487 0.93757 0.92243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.01 0.38 -0.53 16 2 C 0.05 0.99 7.20 -82.46 -0.59 0.40 16 3 C -0.29 -5.89 9.58 -39.77 -0.38 -6.27 16 4 C 0.30 6.38 7.68 -152.76 -1.17 5.20 16 5 N -0.62 -11.53 5.40 -12.21 -0.07 -11.60 16 6 C 0.58 9.60 7.76 -12.35 -0.10 9.51 16 7 O -0.50 -8.79 13.41 5.30 0.07 -8.72 16 8 C 0.13 1.77 6.74 -82.98 -0.56 1.21 16 9 C -0.11 -1.24 9.55 -39.48 -0.38 -1.62 16 10 C -0.03 -0.26 10.16 -39.41 -0.40 -0.66 16 11 C 0.04 0.45 7.24 -84.56 -0.61 -0.16 16 12 N -0.48 -5.56 11.30 -12.11 -0.14 -5.69 16 13 C 0.48 4.51 9.39 -88.78 -0.83 3.67 16 14 O -0.44 -2.70 13.62 -17.23 -0.23 -2.94 16 15 N -0.58 -5.74 6.25 -13.33 -0.08 -5.82 16 16 H 0.43 3.34 8.96 -40.82 -0.37 2.98 16 17 C 0.25 3.17 8.46 -155.52 -1.32 1.85 16 18 N -0.44 -6.33 9.54 -8.78 -0.08 -6.41 16 19 N -0.34 -8.17 3.62 -61.46 -0.22 -8.40 16 20 C 0.26 6.50 6.02 -5.20 -0.03 6.47 16 21 C -0.54 -14.60 9.39 -34.44 -0.32 -14.92 16 22 H 0.06 1.84 7.81 -52.48 -0.41 1.43 16 23 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 24 N -0.89 -24.39 13.29 55.43 0.74 -23.65 16 25 Si 0.91 20.75 29.54 -169.99 -5.02 15.73 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 29 N -0.28 -6.56 12.56 33.64 0.42 -6.13 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.16 3.12 5.82 -52.49 -0.31 2.81 16 34 H 0.43 7.89 7.30 -40.82 -0.30 7.59 16 35 H 0.16 1.48 7.61 -52.49 -0.40 1.08 16 36 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 37 H 0.42 0.26 9.06 45.56 0.41 0.68 16 38 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.04 1.10 7.52 -51.93 -0.39 0.71 16 40 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 357.93 15.07 5.39 5.39 Total: -1.00 -34.39 357.93 -8.65 -43.04 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -3.01 Total: 9.35 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: -6.42 Total: 5.85 kcal Atomic # 7 Polarization: -68.27 SS G_CDS: 0.57 Total: -67.71 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: -0.16 Total: -11.66 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.39 -8.65 -43.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597099953.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.342 kcal (2) G-P(sol) polarization free energy of solvation -34.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds