Wall clock time and date at job start Wed Apr 1 2020 01:05:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39733 * 125.77384 * 2 1 4 4 C 1.36153 * 107.85399 * 180.15483 * 3 2 1 5 5 N 1.39359 * 126.26080 * 179.88365 * 4 3 2 6 6 C 1.34784 * 119.99963 * 359.68158 * 5 4 3 7 7 O 1.21575 * 119.99895 * 0.02562 * 6 5 4 8 8 C 1.47803 * 119.99976 * 180.02562 * 6 5 4 9 9 C 1.39735 * 119.43987 * 179.72980 * 8 6 5 10 10 C 1.36988 * 119.59263 * 180.25609 * 9 8 6 11 11 C 1.39903 * 118.37140 * 0.03535 * 10 9 8 12 12 N 1.35433 * 133.68277 * 179.97438 * 11 10 9 13 13 C 1.30926 * 109.56762 * 179.97438 * 12 11 10 14 14 O 1.35178 * 124.99726 * 180.02562 * 13 12 11 15 15 N 1.36390 * 110.00870 * 359.97438 * 13 12 11 16 16 H 0.96994 * 126.32452 * 179.97438 * 15 13 12 17 17 C 1.38257 * 107.35626 * 0.02562 * 15 13 12 18 18 N 1.31770 * 133.70597 * 180.02562 * 17 15 13 19 19 N 1.35811 * 107.47659 * 359.61194 * 4 3 2 20 20 C 1.46495 * 126.09801 * 180.22111 * 19 4 3 21 21 C 1.50698 * 109.47291 * 90.00172 * 20 19 4 22 22 H 1.08004 * 119.99549 * 0.02562 * 21 20 19 23 23 C 1.37879 * 120.00208 * 180.02562 * 21 20 19 24 24 N 1.31513 * 119.99882 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99837 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47270 * 90.00061 * 25 23 21 27 27 H 1.48502 * 109.47095 * 210.00266 * 25 23 21 28 28 H 1.48503 * 109.47169 * 330.00043 * 25 23 21 29 29 N 1.30825 * 125.78013 * 179.71761 * 2 1 3 30 30 H 1.09001 * 109.46979 * 270.24865 * 1 2 3 31 31 H 1.08991 * 109.47191 * 30.25237 * 1 2 3 32 32 H 1.09000 * 109.46989 * 150.25802 * 1 2 3 33 33 H 1.07992 * 126.07036 * 0.02629 * 3 2 1 34 34 H 0.96998 * 120.00387 * 179.68691 * 5 4 3 35 35 H 1.07998 * 120.20452 * 0.22954 * 9 8 6 36 36 H 1.08004 * 120.81696 * 180.02562 * 10 9 8 37 37 H 0.96701 * 114.00702 * 89.97270 * 14 13 12 38 38 H 1.09000 * 109.47447 * 210.00179 * 20 19 4 39 39 H 1.09000 * 109.47029 * 330.00140 * 20 19 4 40 40 H 0.96996 * 119.99421 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1337 0.0000 4 6 3.6194 0.7148 -0.0035 5 7 4.7494 1.5304 -0.0070 6 6 4.6127 2.8712 -0.0135 7 8 3.5036 3.3692 -0.0160 8 6 5.8112 3.7362 -0.0178 9 6 5.6559 5.1249 -0.0303 10 6 6.7645 5.9295 -0.0396 11 6 8.0256 5.3237 -0.0370 12 7 9.2929 5.8015 -0.0442 13 6 10.1384 4.8020 -0.0364 14 8 11.4846 4.9252 -0.0399 15 7 9.4614 3.6181 -0.0231 16 1 9.8545 2.7314 -0.0157 17 6 8.1111 3.9151 -0.0233 18 7 7.0172 3.1805 -0.0133 19 7 3.6089 -0.6433 0.0031 20 6 4.7859 -1.5155 0.0069 21 6 5.1901 -1.8077 1.4290 22 1 4.6262 -1.3861 2.2481 23 6 6.2796 -2.6131 1.6844 24 7 6.9665 -3.1259 0.6870 25 14 6.7801 -2.9758 3.4472 26 1 6.0798 -4.1972 3.9193 27 1 8.2481 -3.1911 3.5107 28 1 6.4105 -1.8273 4.3130 29 7 2.2719 -1.0613 0.0052 30 1 -0.3633 0.0045 1.0277 31 1 -0.3633 0.8876 -0.5177 32 1 -0.3633 -0.8923 -0.5098 33 1 1.9874 2.1598 0.0004 34 1 5.6343 1.1331 -0.0047 35 1 4.6680 5.5611 -0.0331 36 1 6.6675 7.0051 -0.0490 37 1 11.8779 4.9697 0.8424 38 1 4.5478 -2.4494 -0.5023 39 1 5.6075 -1.0193 -0.5097 40 1 7.7331 -3.6922 0.8668 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001597099953.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:54 Heat of formation + Delta-G solvation = 73.658910 kcal Electronic energy + Delta-G solvation = -28513.409854 eV Core-core repulsion = 24330.725345 eV Total energy + Delta-G solvation = -4182.684509 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.123 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.60234 -42.43937 -40.99783 -39.57660 -37.93087 -36.35709 -35.68997 -34.96560 -33.84426 -32.53718 -31.34661 -30.61934 -29.58207 -27.81041 -25.98466 -24.85966 -24.53601 -23.09915 -22.87914 -21.32361 -21.14705 -20.34247 -19.34835 -18.89667 -18.62549 -18.50145 -18.06482 -17.30176 -16.82435 -16.65363 -16.36558 -16.15325 -15.81851 -15.60557 -15.37425 -14.62825 -14.46368 -14.42771 -14.31737 -14.03875 -13.65518 -13.40629 -13.39329 -13.26882 -13.10759 -12.90712 -12.74700 -12.49698 -12.33861 -12.28256 -11.98076 -11.71416 -11.63187 -11.18999 -10.79203 -10.55063 -10.17989 -9.73038 -9.62694 -9.08102 -8.38929 -6.56295 -0.90679 0.00705 0.72825 0.91131 1.19667 1.32054 1.32420 1.34810 1.45214 1.70057 2.03507 2.11009 2.30506 2.36333 2.64555 2.91147 2.92576 3.18647 3.63141 3.70872 3.82777 3.87550 4.21514 4.43618 4.49905 4.60242 4.69473 4.78745 4.81161 4.87261 4.90168 4.93801 4.97815 5.21242 5.24121 5.30675 5.48254 5.59116 5.74090 5.96441 6.05797 6.14125 6.31804 6.35566 6.52121 6.56802 6.80873 7.00409 7.15285 8.67838 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.008412 B = 0.003822 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3327.588270 B = 7323.851680 C =10149.678426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.059 3.941 3 C -0.297 4.297 4 C 0.293 3.707 5 N -0.625 5.625 6 C 0.584 3.416 7 O -0.513 6.513 8 C 0.104 3.896 9 C -0.102 4.102 10 C -0.017 4.017 11 C 0.036 3.964 12 N -0.504 5.504 13 C 0.499 3.501 14 O -0.433 6.433 15 N -0.580 5.580 16 H 0.441 0.559 17 C 0.229 3.771 18 N -0.468 5.468 19 N -0.370 5.370 20 C 0.274 3.726 21 C -0.555 4.555 22 H 0.047 0.953 23 C 0.028 3.972 24 N -0.914 5.914 25 Si 0.969 3.031 26 H -0.273 1.273 27 H -0.268 1.268 28 H -0.273 1.273 29 N -0.326 5.326 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.176 0.824 34 H 0.423 0.577 35 H 0.182 0.818 36 H 0.189 0.811 37 H 0.442 0.558 38 H 0.029 0.971 39 H 0.041 0.959 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.149 19.176 -0.381 19.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C -0.329 4.329 4 C 0.071 3.929 5 N -0.271 5.271 6 C 0.370 3.630 7 O -0.386 6.386 8 C -0.043 4.043 9 C -0.126 4.126 10 C -0.044 4.044 11 C -0.086 4.086 12 N -0.237 5.237 13 C 0.194 3.806 14 O -0.239 6.239 15 N -0.209 5.209 16 H 0.284 0.716 17 C -0.011 4.011 18 N -0.184 5.184 19 N -0.156 5.156 20 C 0.155 3.845 21 C -0.594 4.594 22 H 0.065 0.935 23 C -0.174 4.174 24 N -0.552 5.552 25 Si 0.793 3.207 26 H -0.199 1.199 27 H -0.192 1.192 28 H -0.198 1.198 29 N -0.151 5.151 30 H 0.104 0.896 31 H 0.117 0.883 32 H 0.093 0.907 33 H 0.193 0.807 34 H 0.261 0.739 35 H 0.200 0.800 36 H 0.207 0.793 37 H 0.307 0.693 38 H 0.047 0.953 39 H 0.059 0.941 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.136 18.058 -1.016 18.802 hybrid contribution 1.429 -0.860 1.164 2.034 sum 6.565 17.199 0.148 18.410 Atomic orbital electron populations 1.20243 0.83609 1.04191 1.03815 1.22921 0.98849 0.89907 0.98938 1.21537 0.88566 1.01167 1.21606 1.18437 0.89257 0.82874 1.02343 1.42697 1.08142 1.05811 1.70468 1.17938 0.88576 0.80334 0.76123 1.90708 1.25272 1.73904 1.48765 1.20374 0.87904 0.92787 1.03208 1.21729 1.02151 0.90621 0.98078 1.20811 0.86426 1.02767 0.94364 1.20059 0.93796 0.90771 1.03997 1.70705 0.98747 1.28460 1.25776 1.20340 0.85874 0.79749 0.94624 1.84806 1.08667 1.93111 1.37351 1.43154 1.03509 1.11462 1.62745 0.71604 1.18583 0.85213 0.91856 1.05407 1.66008 0.96961 1.41626 1.13768 1.49308 1.06332 1.02711 1.57227 1.19175 0.78608 0.88882 0.97810 1.21409 1.13814 1.32558 0.91568 0.93451 1.25687 0.95302 0.94293 1.02125 1.69999 1.19502 1.32722 1.32960 0.85398 0.77949 0.78645 0.78745 1.19869 1.19215 1.19793 1.77287 0.86235 1.23749 1.27853 0.89582 0.88272 0.90710 0.80661 0.73904 0.80031 0.79346 0.69284 0.95318 0.94118 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.64 10.44 71.24 0.74 -0.90 16 2 C 0.06 2.36 7.20 43.07 0.31 2.67 16 3 C -0.30 -12.09 9.58 22.15 0.21 -11.88 16 4 C 0.29 12.94 7.68 131.19 1.01 13.95 16 5 N -0.62 -24.21 5.40 -310.81 -1.68 -25.89 16 6 C 0.58 19.57 7.76 86.77 0.67 20.24 16 7 O -0.51 -17.77 13.41 -3.95 -0.05 -17.83 16 8 C 0.10 2.88 6.74 41.89 0.28 3.16 16 9 C -0.10 -2.05 9.55 22.34 0.21 -1.84 16 10 C -0.02 -0.29 10.16 22.38 0.23 -0.06 16 11 C 0.04 0.80 7.24 39.70 0.29 1.09 16 12 N -0.50 -10.66 11.30 -306.03 -3.46 -14.11 16 13 C 0.50 8.45 9.39 179.70 1.69 10.13 16 14 O -0.43 -4.23 13.62 -84.58 -1.15 -5.39 16 15 N -0.58 -10.82 6.25 -307.03 -1.92 -12.74 16 16 H 0.44 6.50 8.96 -92.71 -0.83 5.67 16 17 C 0.23 5.66 8.46 134.00 1.13 6.79 16 18 N -0.47 -13.46 9.54 -181.69 -1.73 -15.19 16 19 N -0.37 -18.34 3.62 -348.35 -1.26 -19.60 16 20 C 0.27 14.67 6.02 85.63 0.52 15.19 16 21 C -0.56 -31.24 9.39 25.60 0.24 -31.00 16 22 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 23 C 0.03 1.49 5.46 84.66 0.46 1.95 16 24 N -0.91 -50.87 13.29 21.45 0.28 -50.58 16 25 Si 0.97 42.73 29.54 68.60 2.03 44.75 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 29 N -0.33 -15.65 12.56 -47.47 -0.60 -16.24 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.07 1.92 8.14 -2.39 -0.02 1.91 16 33 H 0.18 6.61 5.82 -2.91 -0.02 6.59 16 34 H 0.42 16.60 7.30 -92.71 -0.68 15.92 16 35 H 0.18 2.89 7.61 -2.91 -0.02 2.87 16 36 H 0.19 1.89 8.06 -2.91 -0.02 1.86 16 37 H 0.44 -0.77 9.06 -74.06 -0.67 -1.45 16 38 H 0.03 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.04 2.16 7.52 -2.39 -0.02 2.14 16 40 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -76.07 357.93 -2.55 -78.62 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: -1.01 Total: 24.72 kcal Atomic # 6 Polarization: 21.49 SS G_CDS: 8.00 Total: 29.49 kcal Atomic # 7 Polarization: -144.01 SS G_CDS: -10.36 Total: -154.37 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -1.21 Total: -23.21 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -76.07 -2.55 -78.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597099953.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.281 kcal (2) G-P(sol) polarization free energy of solvation -76.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds