Wall clock time and date at job start Wed Apr 1 2020 01:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 110.53650 * 2 1 4 4 C 1.38318 * 119.87608 * 88.34511 * 3 2 1 5 5 C 1.38039 * 120.11429 * 179.76643 * 4 3 2 6 6 C 1.39303 * 119.87874 * 0.48994 * 5 4 3 7 7 C 1.48459 * 120.11544 * 179.78890 * 6 5 4 8 8 N 1.34045 * 126.67230 * 179.66584 * 7 6 5 9 9 N 1.28992 * 107.26455 * 179.89379 * 8 7 6 10 10 N 1.28730 * 108.94350 * 0.37714 * 9 8 7 11 11 H 0.96998 * 125.33790 * 179.76369 * 10 9 8 12 12 N 1.28866 * 109.31890 * 359.75726 * 10 9 8 13 13 C 1.39296 * 119.76606 * 359.76921 * 6 5 4 14 14 C 1.38033 * 119.88447 * 359.97438 * 13 6 5 15 15 N 1.47310 * 110.59797 * 237.17573 * 2 1 3 16 16 C 1.34535 * 106.61914 * 241.31915 * 15 2 1 17 17 O 1.21533 * 123.77496 * 179.73377 * 16 15 2 18 18 N 1.33794 * 112.45203 * 359.97438 * 16 15 2 19 19 C 1.46504 * 124.17482 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.47134 * 90.02199 * 19 18 16 21 21 H 1.08000 * 120.00173 * 0.02562 * 20 19 18 22 22 C 1.37878 * 120.00341 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99543 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00236 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47108 * 60.00369 * 24 22 20 26 26 H 1.48499 * 109.46809 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.46997 * 299.99789 * 24 22 20 28 28 C 1.34768 * 111.64772 * 359.97438 * 18 16 15 29 29 O 1.21236 * 127.15541 * 179.97438 * 28 18 16 30 30 H 1.08996 * 109.47099 * 182.12297 * 1 2 3 31 31 H 1.08998 * 109.46737 * 302.12902 * 1 2 3 32 32 H 1.09004 * 109.46658 * 62.12366 * 1 2 3 33 33 H 1.07995 * 119.94339 * 0.02596 * 4 3 2 34 34 H 1.07998 * 120.05622 * 180.25575 * 5 4 3 35 35 H 1.08002 * 120.05848 * 180.02562 * 13 6 5 36 36 H 1.08000 * 119.94088 * 180.02562 * 14 13 6 37 37 H 0.97004 * 126.69434 * 61.34219 * 15 2 1 38 38 H 1.08993 * 109.46949 * 210.02562 * 19 18 16 39 39 H 1.09003 * 109.46702 * 330.02359 * 19 18 16 40 40 H 0.97002 * 119.99929 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4113 0.0000 4 6 2.2680 2.0686 1.1989 5 6 2.7566 3.3596 1.2047 6 6 3.0293 4.0039 0.0001 7 6 3.5506 5.3940 0.0002 8 7 3.8619 6.1323 -1.0744 9 7 4.2749 7.2768 -0.6459 10 7 4.2411 7.2782 0.6409 11 1 4.5044 8.0196 1.2082 12 7 3.8026 6.1402 1.0572 13 6 2.8117 3.3391 -1.2044 14 6 2.3278 2.0464 -1.1989 15 7 2.0483 -0.7475 -1.1588 16 6 2.7628 -1.7751 -0.6655 17 8 3.3285 -2.5985 -1.3576 18 7 2.7766 -1.7923 0.6723 19 6 3.4761 -2.7985 1.4752 20 6 4.8830 -2.3333 1.7492 21 1 5.2221 -1.3829 1.3642 22 6 5.7370 -3.1203 2.4924 23 7 5.3238 -4.2774 2.9616 24 14 7.4807 -2.5433 2.8326 25 1 7.4407 -1.2577 3.5748 26 1 8.1897 -3.5633 3.6464 27 1 8.1981 -2.3506 1.5468 28 6 2.0678 -0.7696 1.1900 29 8 1.8948 -0.5186 2.3634 30 1 -0.3633 -1.0269 0.0381 31 1 -0.3633 0.5465 0.8703 32 1 -0.3633 0.4805 -0.9085 33 1 2.0526 1.5695 2.1320 34 1 2.9235 3.8705 2.1415 35 1 3.0219 3.8340 -2.1411 36 1 2.1591 1.5299 -2.1322 37 1 1.9030 -0.5392 -2.0950 38 1 2.9498 -2.9400 2.4191 39 1 3.5050 -3.7421 0.9303 40 1 5.9245 -4.8310 3.4848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001603820468.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:23:27 Heat of formation + Delta-G solvation = 113.902271 kcal Electronic energy + Delta-G solvation = -29149.303208 eV Core-core repulsion = 24968.363783 eV Total energy + Delta-G solvation = -4180.939426 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.123 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.70381 -42.11685 -39.35602 -37.97006 -36.09755 -34.92187 -34.52886 -33.68351 -32.59972 -31.41226 -30.98248 -29.49373 -27.89271 -25.45187 -24.91579 -24.14020 -23.27724 -22.57201 -22.14148 -20.77954 -19.78741 -19.42571 -17.77204 -17.38954 -17.15630 -16.74002 -16.42293 -15.64024 -15.50069 -15.05605 -14.84932 -14.61905 -14.27166 -14.12371 -13.89390 -13.80347 -13.57160 -13.16250 -12.93898 -12.77476 -12.50759 -12.42330 -12.29207 -11.71658 -11.61220 -11.58108 -11.52011 -11.23192 -11.10026 -11.06886 -10.74850 -10.43786 -10.08052 -9.92197 -9.57235 -9.29935 -9.09447 -8.73908 -8.62297 -8.52044 -6.15241 -4.20415 0.45053 0.92782 1.25680 1.97358 2.04995 2.17928 2.86203 3.30905 3.33711 3.36714 3.42110 3.45017 3.70288 3.71843 3.94893 4.20069 4.34419 4.41287 4.78646 4.82044 4.91745 5.02441 5.19773 5.21042 5.26432 5.39147 5.44892 5.49782 5.65422 5.80100 5.88685 5.96229 6.05635 6.19410 6.26120 6.36071 6.53656 6.70468 6.99881 7.10220 7.18863 7.77481 7.88319 7.89061 7.99707 8.01602 8.68572 8.83670 9.44560 10.94149 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.010803 B = 0.003456 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.164668 B = 8100.454685 C = 9616.147750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.156 3.844 3 C -0.063 4.063 4 C -0.105 4.105 5 C -0.073 4.073 6 C -0.021 4.021 7 C 0.224 3.776 8 N -0.268 5.268 9 N -0.051 5.051 10 N -0.228 5.228 11 H 0.475 0.525 12 N -0.292 5.292 13 C -0.076 4.076 14 C -0.101 4.101 15 N -0.731 5.731 16 C 0.702 3.298 17 O -0.536 6.536 18 N -0.553 5.553 19 C 0.249 3.751 20 C -0.535 4.535 21 H 0.060 0.940 22 C 0.067 3.933 23 N -0.891 5.891 24 Si 0.903 3.097 25 H -0.275 1.275 26 H -0.284 1.284 27 H -0.275 1.275 28 C 0.533 3.467 29 O -0.467 6.467 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.152 0.848 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.131 0.869 37 H 0.431 0.569 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.632 20.186 -5.953 23.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.064 3.936 3 C -0.066 4.066 4 C -0.123 4.123 5 C -0.093 4.093 6 C -0.024 4.024 7 C -0.056 4.056 8 N -0.142 5.142 9 N -0.047 5.047 10 N -0.074 5.074 11 H 0.329 0.671 12 N -0.144 5.144 13 C -0.096 4.096 14 C -0.119 4.119 15 N -0.397 5.397 16 C 0.403 3.597 17 O -0.409 6.409 18 N -0.297 5.297 19 C 0.132 3.868 20 C -0.573 4.573 21 H 0.078 0.922 22 C -0.136 4.136 23 N -0.529 5.529 24 Si 0.730 3.270 25 H -0.200 1.200 26 H -0.209 1.209 27 H -0.200 1.200 28 C 0.318 3.682 29 O -0.338 6.338 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.169 0.831 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.149 0.851 37 H 0.275 0.725 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.051 20.135 -5.764 22.816 hybrid contribution 1.113 0.512 0.359 1.276 sum -7.938 20.647 -5.406 22.771 Atomic orbital electron populations 1.21954 0.89666 1.03911 1.04158 1.20221 0.96751 0.89941 0.86669 1.19686 0.99126 0.93445 0.94306 1.21394 0.97704 0.94227 0.99021 1.21151 0.96630 0.94419 0.97132 1.17279 1.03289 0.86896 0.94936 1.23727 1.00559 0.97054 0.84216 1.76081 1.14912 0.97536 1.25624 1.78902 1.15310 1.16439 0.94014 1.47729 1.41261 1.12555 1.05874 0.67051 1.74965 1.18040 0.94560 1.26793 1.21070 0.97102 0.94136 0.97262 1.20752 0.99464 0.94197 0.97479 1.45677 1.56325 1.29577 1.08104 1.15960 0.79170 0.81916 0.82610 1.90969 1.47706 1.41105 1.61089 1.46816 1.46923 1.28663 1.07253 1.19631 0.91721 0.85360 0.90105 1.21202 0.96216 1.05546 1.34380 0.92226 1.24877 0.99015 0.94640 0.95087 1.69909 1.36623 1.11020 1.35319 0.86473 0.83600 0.78479 0.78471 1.20025 1.20927 1.19994 1.20290 0.77986 0.80904 0.89054 1.90695 1.57918 1.68777 1.16374 0.90883 0.89797 0.90471 0.83054 0.84567 0.84406 0.85138 0.72498 0.92872 0.92705 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.97 37.16 0.33 -1.05 16 2 C 0.16 2.11 1.16 -133.25 -0.15 1.96 16 3 C -0.06 -0.80 4.88 -104.56 -0.51 -1.31 16 4 C -0.11 -1.40 9.16 -39.63 -0.36 -1.76 16 5 C -0.07 -0.88 9.70 -39.26 -0.38 -1.26 16 6 C -0.02 -0.24 5.88 -104.90 -0.62 -0.86 16 7 C 0.22 2.66 7.94 -156.31 -1.24 1.42 16 8 N -0.27 -3.23 12.23 32.15 0.39 -2.84 16 9 N -0.05 -0.52 13.47 60.35 0.81 0.29 16 10 N -0.23 -1.73 7.90 60.35 0.48 -1.26 16 11 H 0.48 1.25 8.96 -340.37 -3.05 -1.80 16 12 N -0.29 -3.03 12.08 32.17 0.39 -2.65 16 13 C -0.08 -0.82 9.70 -39.26 -0.38 -1.20 16 14 C -0.10 -1.08 9.33 -39.63 -0.37 -1.45 16 15 N -0.73 -10.20 5.29 -54.02 -0.29 -10.49 16 16 C 0.70 14.07 8.62 -88.01 -0.76 13.31 16 17 O -0.54 -12.67 17.48 5.34 0.09 -12.58 16 18 N -0.55 -12.04 2.59 -122.02 -0.32 -12.36 16 19 C 0.25 6.51 5.45 -5.19 -0.03 6.48 16 20 C -0.53 -15.24 9.39 -34.44 -0.32 -15.56 16 21 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 22 C 0.07 1.91 5.46 -17.82 -0.10 1.81 16 23 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 24 Si 0.90 21.91 29.54 -169.99 -5.02 16.89 16 25 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 28 C 0.53 10.02 6.53 -10.56 -0.07 9.95 16 29 O -0.47 -9.57 15.67 5.60 0.09 -9.48 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.15 2.19 5.78 -52.49 -0.30 1.88 16 34 H 0.14 1.48 7.88 -52.49 -0.41 1.07 16 35 H 0.14 1.30 7.89 -52.49 -0.41 0.89 16 36 H 0.13 1.07 6.93 -52.49 -0.36 0.71 16 37 H 0.43 4.47 8.09 -40.82 -0.33 4.14 16 38 H 0.05 1.44 8.00 -51.93 -0.42 1.03 16 39 H 0.05 1.53 7.86 -51.93 -0.41 1.12 16 40 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 354.96 15.07 5.35 5.35 Total: -1.00 -35.76 354.96 -8.76 -44.52 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -6.51 Total: -0.52 kcal Atomic # 6 Polarization: 15.43 SS G_CDS: -4.96 Total: 10.47 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 2.21 Total: -54.64 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: 0.18 Total: -22.06 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.76 -8.76 -44.52 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603820468.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.418 kcal (2) G-P(sol) polarization free energy of solvation -35.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds