Wall clock time and date at job start Wed Apr 1 2020 01:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50705 * 110.53650 * 2 1 4 4 C 1.38318 * 119.87608 * 88.34511 * 3 2 1 5 5 C 1.38039 * 120.11429 * 179.76643 * 4 3 2 6 6 C 1.39303 * 119.87874 * 0.48994 * 5 4 3 7 7 C 1.48459 * 120.11544 * 179.78890 * 6 5 4 8 8 N 1.34045 * 126.67230 * 179.66584 * 7 6 5 9 9 N 1.28992 * 107.26455 * 179.89379 * 8 7 6 10 10 N 1.28730 * 108.94350 * 0.37714 * 9 8 7 11 11 H 0.96998 * 125.33790 * 179.76369 * 10 9 8 12 12 N 1.28866 * 109.31890 * 359.75726 * 10 9 8 13 13 C 1.39296 * 119.76606 * 359.76921 * 6 5 4 14 14 C 1.38033 * 119.88447 * 359.97438 * 13 6 5 15 15 N 1.47310 * 110.59797 * 237.17573 * 2 1 3 16 16 C 1.34535 * 106.61914 * 241.31915 * 15 2 1 17 17 O 1.21533 * 123.77496 * 179.73377 * 16 15 2 18 18 N 1.33794 * 112.45203 * 359.97438 * 16 15 2 19 19 C 1.46504 * 124.17482 * 179.97438 * 18 16 15 20 20 C 1.50696 * 109.47134 * 90.02199 * 19 18 16 21 21 H 1.08000 * 120.00173 * 0.02562 * 20 19 18 22 22 C 1.37878 * 120.00341 * 179.97438 * 20 19 18 23 23 N 1.31517 * 119.99543 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00236 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47108 * 60.00369 * 24 22 20 26 26 H 1.48499 * 109.46809 * 180.02562 * 24 22 20 27 27 H 1.48494 * 109.46997 * 299.99789 * 24 22 20 28 28 C 1.34768 * 111.64772 * 359.97438 * 18 16 15 29 29 O 1.21236 * 127.15541 * 179.97438 * 28 18 16 30 30 H 1.08996 * 109.47099 * 182.12297 * 1 2 3 31 31 H 1.08998 * 109.46737 * 302.12902 * 1 2 3 32 32 H 1.09004 * 109.46658 * 62.12366 * 1 2 3 33 33 H 1.07995 * 119.94339 * 0.02596 * 4 3 2 34 34 H 1.07998 * 120.05622 * 180.25575 * 5 4 3 35 35 H 1.08002 * 120.05848 * 180.02562 * 13 6 5 36 36 H 1.08000 * 119.94088 * 180.02562 * 14 13 6 37 37 H 0.97004 * 126.69434 * 61.34219 * 15 2 1 38 38 H 1.08993 * 109.46949 * 210.02562 * 19 18 16 39 39 H 1.09003 * 109.46702 * 330.02359 * 19 18 16 40 40 H 0.97002 * 119.99929 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4113 0.0000 4 6 2.2680 2.0686 1.1989 5 6 2.7566 3.3596 1.2047 6 6 3.0293 4.0039 0.0001 7 6 3.5506 5.3940 0.0002 8 7 3.8619 6.1323 -1.0744 9 7 4.2749 7.2768 -0.6459 10 7 4.2411 7.2782 0.6409 11 1 4.5044 8.0196 1.2082 12 7 3.8026 6.1402 1.0572 13 6 2.8117 3.3391 -1.2044 14 6 2.3278 2.0464 -1.1989 15 7 2.0483 -0.7475 -1.1588 16 6 2.7628 -1.7751 -0.6655 17 8 3.3285 -2.5985 -1.3576 18 7 2.7766 -1.7923 0.6723 19 6 3.4761 -2.7985 1.4752 20 6 4.8830 -2.3333 1.7492 21 1 5.2221 -1.3829 1.3642 22 6 5.7370 -3.1203 2.4924 23 7 5.3238 -4.2774 2.9616 24 14 7.4807 -2.5433 2.8326 25 1 7.4407 -1.2577 3.5748 26 1 8.1897 -3.5633 3.6464 27 1 8.1981 -2.3506 1.5468 28 6 2.0678 -0.7696 1.1900 29 8 1.8948 -0.5186 2.3634 30 1 -0.3633 -1.0269 0.0381 31 1 -0.3633 0.5465 0.8703 32 1 -0.3633 0.4805 -0.9085 33 1 2.0526 1.5695 2.1320 34 1 2.9235 3.8705 2.1415 35 1 3.0219 3.8340 -2.1411 36 1 2.1591 1.5299 -2.1322 37 1 1.9030 -0.5392 -2.0950 38 1 2.9498 -2.9400 2.4191 39 1 3.5050 -3.7421 0.9303 40 1 5.9245 -4.8310 3.4848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001603820468.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:23:25 Heat of formation + Delta-G solvation = 87.536976 kcal Electronic energy + Delta-G solvation = -29150.446493 eV Core-core repulsion = 24968.363783 eV Total energy + Delta-G solvation = -4182.082711 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.123 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.48764 -43.56961 -40.40758 -39.51600 -37.48397 -36.57549 -35.42717 -34.87712 -34.32466 -32.47521 -31.97680 -30.41502 -29.87630 -26.52368 -25.74992 -25.70375 -24.79785 -23.61935 -23.27501 -21.95033 -21.22882 -20.22234 -19.09127 -18.99652 -18.18848 -18.16462 -17.55463 -17.26125 -16.84935 -16.76554 -16.19735 -15.88366 -15.67142 -15.27379 -15.15123 -14.96678 -14.71166 -14.39742 -14.19349 -13.85220 -13.68417 -13.65444 -13.39539 -13.26140 -13.16209 -12.72217 -12.64691 -12.44628 -12.41632 -12.35480 -12.05114 -11.99182 -11.94071 -11.70792 -11.05299 -10.71502 -10.69659 -10.42325 -9.99622 -9.67627 -8.33336 -6.47620 -0.43503 0.13430 0.35785 0.62586 1.21293 1.33314 1.38155 1.38981 1.40275 1.48257 2.08604 2.20057 2.35379 2.61730 2.73355 2.89650 3.00035 3.12438 3.25685 3.80665 3.94283 4.01992 4.15226 4.27679 4.36121 4.39446 4.53251 4.64168 4.68382 4.74039 4.78214 4.97162 5.02915 5.08238 5.13905 5.26605 5.35557 5.42867 5.56481 5.59105 5.78424 5.83967 5.87471 6.29697 6.45371 6.58605 7.08678 7.15650 7.27082 8.76330 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.010803 B = 0.003456 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2591.164668 B = 8100.454685 C = 9616.147750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.175 3.825 3 C -0.076 4.076 4 C -0.119 4.119 5 C -0.076 4.076 6 C -0.024 4.024 7 C 0.210 3.790 8 N -0.288 5.288 9 N -0.055 5.055 10 N -0.200 5.200 11 H 0.494 0.506 12 N -0.297 5.297 13 C -0.072 4.072 14 C -0.090 4.090 15 N -0.696 5.696 16 C 0.699 3.301 17 O -0.580 6.580 18 N -0.572 5.572 19 C 0.265 3.735 20 C -0.556 4.556 21 H 0.052 0.948 22 C 0.017 3.983 23 N -0.920 5.920 24 Si 0.968 3.032 25 H -0.267 1.267 26 H -0.271 1.271 27 H -0.271 1.271 28 C 0.521 3.479 29 O -0.491 6.491 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.117 0.883 33 H 0.133 0.867 34 H 0.142 0.858 35 H 0.155 0.845 36 H 0.161 0.839 37 H 0.453 0.547 38 H 0.033 0.967 39 H 0.028 0.972 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.708 22.772 -7.256 25.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.084 3.916 3 C -0.078 4.078 4 C -0.137 4.137 5 C -0.096 4.096 6 C -0.027 4.027 7 C -0.069 4.069 8 N -0.160 5.160 9 N -0.050 5.050 10 N -0.051 5.051 11 H 0.353 0.647 12 N -0.149 5.149 13 C -0.092 4.092 14 C -0.108 4.108 15 N -0.364 5.364 16 C 0.400 3.600 17 O -0.456 6.456 18 N -0.315 5.315 19 C 0.145 3.855 20 C -0.594 4.594 21 H 0.070 0.930 22 C -0.184 4.184 23 N -0.558 5.558 24 Si 0.792 3.208 25 H -0.192 1.192 26 H -0.195 1.195 27 H -0.196 1.196 28 C 0.309 3.691 29 O -0.363 6.363 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.135 0.865 33 H 0.151 0.849 34 H 0.160 0.840 35 H 0.173 0.827 36 H 0.179 0.821 37 H 0.301 0.699 38 H 0.051 0.949 39 H 0.046 0.954 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -9.178 22.801 -7.094 25.582 hybrid contribution 1.115 -0.171 0.834 1.402 sum -8.063 22.630 -6.260 24.826 Atomic orbital electron populations 1.22066 0.86189 1.04534 1.06583 1.20238 0.98889 0.89325 0.83153 1.19619 1.00512 0.92632 0.95050 1.21280 0.98900 0.94883 0.98666 1.21160 0.96675 0.94024 0.97772 1.17423 1.02933 0.87152 0.95188 1.23757 1.01348 0.97288 0.84545 1.76057 1.15759 0.98069 1.26111 1.78846 1.15413 1.15956 0.94789 1.47786 1.39372 1.12405 1.05560 0.64656 1.74933 1.18100 0.95196 1.26716 1.21301 0.96218 0.94074 0.97569 1.21006 0.98062 0.94104 0.97669 1.45435 1.54227 1.27335 1.09362 1.16053 0.79441 0.82699 0.81770 1.90933 1.49856 1.43113 1.61713 1.46745 1.47591 1.29000 1.08149 1.19024 0.91327 0.85716 0.89427 1.21448 0.97522 1.05480 1.34941 0.93000 1.25789 1.03299 0.94662 0.94602 1.70011 1.38228 1.11955 1.35623 0.85455 0.78344 0.78476 0.78552 1.19231 1.19540 1.19564 1.21215 0.77124 0.80414 0.90347 1.90671 1.58470 1.69133 1.17980 0.91066 0.89090 0.86485 0.84930 0.84048 0.82695 0.82106 0.69864 0.94923 0.95424 0.91866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 8.97 71.98 0.65 -1.69 16 2 C 0.17 4.46 1.16 2.24 0.00 4.46 16 3 C -0.08 -1.78 4.88 -19.83 -0.10 -1.88 16 4 C -0.12 -3.08 9.16 22.24 0.20 -2.88 16 5 C -0.08 -1.77 9.70 22.48 0.22 -1.55 16 6 C -0.02 -0.52 5.88 -20.04 -0.12 -0.64 16 7 C 0.21 4.60 7.94 137.38 1.09 5.69 16 8 N -0.29 -6.36 12.23 -52.18 -0.64 -7.00 16 9 N -0.06 -1.00 13.47 37.02 0.50 -0.50 16 10 N -0.20 -2.61 7.90 37.02 0.29 -2.31 16 11 H 0.49 1.41 8.96 -347.54 -3.12 -1.71 16 12 N -0.30 -5.62 12.08 -52.13 -0.63 -6.25 16 13 C -0.07 -1.34 9.70 22.48 0.22 -1.13 16 14 C -0.09 -1.63 9.33 22.24 0.21 -1.43 16 15 N -0.70 -18.11 5.29 -443.25 -2.34 -20.45 16 16 C 0.70 28.20 8.62 179.44 1.55 29.75 16 17 O -0.58 -28.00 17.48 -3.82 -0.07 -28.07 16 18 N -0.57 -25.69 2.59 -777.22 -2.01 -27.70 16 19 C 0.26 14.60 5.45 85.63 0.47 15.06 16 20 C -0.56 -32.74 9.39 25.60 0.24 -32.50 16 21 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 22 C 0.02 0.99 5.46 84.65 0.46 1.45 16 23 N -0.92 -55.19 13.29 21.45 0.28 -54.91 16 24 Si 0.97 45.22 29.54 68.60 2.03 47.25 16 25 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 26 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 27 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 28 C 0.52 19.94 6.53 87.94 0.57 20.51 16 29 O -0.49 -20.85 15.67 -2.89 -0.05 -20.89 16 30 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.13 3.93 5.78 -2.91 -0.02 3.92 16 34 H 0.14 3.01 7.88 -2.91 -0.02 2.99 16 35 H 0.16 2.40 7.89 -2.91 -0.02 2.38 16 36 H 0.16 1.86 6.93 -2.91 -0.02 1.84 16 37 H 0.45 7.83 8.09 -92.71 -0.75 7.08 16 38 H 0.03 1.90 8.00 -2.39 -0.02 1.88 16 39 H 0.03 1.65 7.86 -2.39 -0.02 1.63 16 40 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -80.87 354.96 0.31 -80.55 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -2.72 Total: 7.03 kcal Atomic # 6 Polarization: 27.58 SS G_CDS: 5.66 Total: 33.25 kcal Atomic # 7 Polarization: -114.57 SS G_CDS: -4.55 Total: -119.12 kcal Atomic # 8 Polarization: -48.85 SS G_CDS: -0.11 Total: -48.96 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -80.87 0.31 -80.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001603820468.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.092 kcal (2) G-P(sol) polarization free energy of solvation -80.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds