Wall clock time and date at job start Wed Apr 1 2020 01:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47253 * 2 1 4 4 H 1.08996 * 109.46852 * 54.84657 * 3 2 1 5 5 C 1.50706 * 109.47162 * 174.84735 * 3 2 1 6 6 H 1.07999 * 119.99602 * 120.00385 * 5 3 2 7 7 C 1.37872 * 120.00088 * 300.00126 * 5 3 2 8 8 N 1.31517 * 119.99912 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 119.99989 * 180.02562 * 7 5 3 10 10 H 1.48492 * 109.47026 * 60.00104 * 9 7 5 11 11 H 1.48505 * 109.46801 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47130 * 299.99607 * 9 7 5 13 13 N 1.46505 * 109.46975 * 294.84910 * 3 2 1 14 14 C 1.38992 * 119.99774 * 157.83643 * 13 3 2 15 15 C 1.39208 * 119.64449 * 355.55733 * 14 13 3 16 16 C 1.38397 * 119.29143 * 179.97438 * 15 14 13 17 17 C 1.50704 * 120.70324 * 180.02562 * 16 15 14 18 18 F 1.39897 * 109.47355 * 179.97438 * 17 16 15 19 19 F 1.39909 * 109.46974 * 299.97727 * 17 16 15 20 20 F 1.39909 * 109.47143 * 59.97106 * 17 16 15 21 21 C 1.38660 * 118.60040 * 0.02562 * 16 15 14 22 22 C 1.39094 * 119.23444 * 359.97438 * 21 16 15 23 23 C 1.48429 * 119.67926 * 179.97438 * 22 21 16 24 24 N 1.34061 * 126.67533 * 0.02562 * 23 22 21 25 25 N 1.28987 * 107.26920 * 179.73994 * 24 23 22 26 26 N 1.28736 * 108.94353 * 0.02562 * 25 24 23 27 27 H 0.97000 * 125.33122 * 179.97438 * 26 25 24 28 28 N 1.28866 * 109.32581 * 0.02562 * 26 25 24 29 29 N 1.32276 * 119.64177 * 175.79281 * 14 13 3 30 30 H 1.09006 * 109.47257 * 295.47539 * 1 2 3 31 31 H 1.09000 * 109.47770 * 55.47778 * 1 2 3 32 32 H 1.09002 * 109.47144 * 175.48147 * 1 2 3 33 33 H 1.09004 * 109.46897 * 240.00088 * 2 1 3 34 34 H 1.08998 * 109.47271 * 120.00259 * 2 1 3 35 35 H 0.96998 * 120.00272 * 179.97438 * 8 7 5 36 36 H 0.96996 * 119.99620 * 337.82648 * 13 3 2 37 37 H 1.07998 * 120.35336 * 359.96148 * 15 14 13 38 38 H 1.07995 * 120.38922 * 180.02562 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6032 1.9822 0.8402 5 6 3.5416 1.4443 0.1276 6 1 4.1488 1.8883 -0.6474 7 6 4.1402 0.8794 1.2337 8 7 3.4007 0.3393 2.1777 9 14 6.0014 0.8824 1.3922 10 1 6.4959 2.2826 1.3926 11 1 6.3910 0.2200 2.6629 12 1 6.5969 0.1474 0.2474 13 7 1.6555 2.0963 -1.2534 14 6 1.5822 3.4827 -1.3199 15 6 1.7847 4.2390 -0.1688 16 6 1.7106 5.6189 -0.2435 17 6 1.9249 6.4685 0.9826 18 9 1.7983 7.8194 0.6419 19 9 0.9695 6.1400 1.9505 20 9 3.2060 6.2346 1.4939 21 6 1.4349 6.2034 -1.4703 22 6 1.2428 5.3903 -2.5823 23 6 0.9466 6.0055 -3.9003 24 7 0.8359 7.3148 -4.1660 25 7 0.5791 7.4296 -5.4248 26 7 0.5252 6.2552 -5.9492 27 1 0.3462 6.0657 -6.8835 28 7 0.7454 5.3708 -5.0382 29 7 1.3162 4.0691 -2.4754 30 1 -0.3634 0.4420 0.9278 31 1 -0.3634 0.5824 -0.8467 32 1 -0.3633 -1.0245 -0.0810 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8218 -0.0585 2.9557 36 1 1.4522 1.5617 -2.0368 37 1 1.9971 3.7539 0.7725 38 1 1.3708 7.2776 -1.5616 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604014299.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:02 Heat of formation + Delta-G solvation = 12.679265 kcal Electronic energy + Delta-G solvation = -29802.191253 eV Core-core repulsion = 25075.005728 eV Total energy + Delta-G solvation = -4727.185525 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.111 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.93913 -47.47092 -47.37423 -44.51949 -40.08472 -36.59427 -34.49543 -33.75982 -33.39623 -32.21648 -31.42778 -29.14285 -26.87895 -26.49700 -24.89798 -24.57878 -23.37247 -21.92284 -21.65535 -20.05531 -19.33829 -18.29911 -18.25274 -18.17907 -17.21233 -16.75903 -16.41786 -15.72839 -15.56754 -14.97901 -14.65073 -14.37358 -14.14121 -14.04546 -14.00533 -13.83180 -13.67119 -13.54790 -13.54341 -13.08674 -12.78292 -12.48837 -12.11769 -12.03690 -11.74723 -11.47550 -11.42330 -11.27028 -11.18806 -11.01416 -10.85673 -10.41956 -10.20309 -10.14057 -9.92113 -9.63496 -9.42897 -9.00621 -8.57232 -7.15411 -6.20787 -4.33038 0.69440 1.10606 1.35205 2.13457 2.36288 2.79648 3.22735 3.27671 3.28305 3.32778 3.78264 3.86119 4.00708 4.25471 4.28222 4.38274 4.64036 5.05405 5.06905 5.22995 5.26484 5.42565 5.50103 5.72592 5.93453 6.00028 6.06610 6.24034 6.26580 6.28444 6.56067 6.67226 6.78071 6.88608 7.20571 7.45772 7.56291 7.82162 8.04228 8.05480 8.19057 8.51823 8.75551 9.36050 10.80220 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.009717 B = 0.004122 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2881.003369 B = 6790.941679 C = 8167.847974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.045 0.955 5 C -0.535 4.535 6 H 0.061 0.939 7 C 0.070 3.930 8 N -0.886 5.886 9 Si 0.896 3.104 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.689 5.689 14 C 0.431 3.569 15 C -0.149 4.149 16 C -0.104 4.104 17 C 0.513 3.487 18 F -0.176 7.176 19 F -0.173 7.173 20 F -0.169 7.169 21 C -0.171 4.171 22 C 0.244 3.756 23 C 0.230 3.770 24 N -0.258 5.258 25 N -0.055 5.055 26 N -0.232 5.232 27 H 0.475 0.525 28 N -0.259 5.259 29 N -0.515 5.515 30 H 0.046 0.954 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.041 0.959 34 H 0.111 0.889 35 H 0.266 0.734 36 H 0.396 0.604 37 H 0.160 0.840 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 9.025 -8.831 14.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.062 0.938 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.134 4.134 8 N -0.524 5.524 9 Si 0.723 3.277 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.314 5.314 14 C 0.189 3.811 15 C -0.176 4.176 16 C -0.113 4.113 17 C 0.459 3.541 18 F -0.158 7.158 19 F -0.155 7.155 20 F -0.151 7.151 21 C -0.197 4.197 22 C 0.103 3.897 23 C -0.051 4.051 24 N -0.132 5.132 25 N -0.050 5.050 26 N -0.078 5.078 27 H 0.329 0.671 28 N -0.111 5.111 29 N -0.235 5.235 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.129 0.871 35 H 0.076 0.924 36 H 0.231 0.769 37 H 0.178 0.822 38 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -6.380 8.760 -9.528 14.430 hybrid contribution 1.142 -0.182 0.373 1.215 sum -5.238 8.578 -9.155 13.595 Atomic orbital electron populations 1.21847 0.98613 0.99643 1.00573 1.21863 0.92273 0.98813 1.03672 1.19006 0.94604 0.89618 0.79779 0.93784 1.21469 0.91035 1.38929 1.05967 0.92061 1.24875 0.98561 0.94596 0.95319 1.69816 1.35348 1.37775 1.09446 0.86574 0.85046 0.78613 0.77429 1.19956 1.21083 1.20193 1.45437 1.69535 1.00291 1.16176 1.18048 0.89113 0.86968 0.86926 1.21568 1.03010 0.91727 1.01314 1.19865 1.04423 0.94173 0.92813 1.18101 0.74488 0.78012 0.83484 1.93164 1.95683 1.34737 1.92178 1.93227 1.64309 1.92351 1.65585 1.93259 1.39291 1.94232 1.88273 1.21145 1.06314 1.01583 0.90689 1.16980 0.98037 0.88041 0.86621 1.23153 1.02199 0.86900 0.92838 1.76088 1.16520 1.16307 1.04294 1.78902 1.15068 1.07878 1.03141 1.47847 1.44677 1.01832 1.13422 0.67095 1.75194 1.18436 1.19543 0.97916 1.66926 1.20019 1.10259 1.26305 0.93463 0.94197 0.94362 0.94016 0.87140 0.92352 0.76920 0.82207 0.83228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 9.85 37.15 0.37 -2.22 16 2 C -0.13 -2.60 5.30 -26.74 -0.14 -2.74 16 3 C 0.27 5.85 1.67 -69.08 -0.12 5.73 16 4 H 0.04 1.02 6.42 -51.93 -0.33 0.69 16 5 C -0.54 -13.08 8.64 -34.44 -0.30 -13.37 16 6 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -22.59 11.29 55.43 0.63 -21.96 16 9 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 10 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.69 -13.12 4.65 -55.07 -0.26 -13.37 16 14 C 0.43 8.08 7.58 -155.11 -1.18 6.91 16 15 C -0.15 -2.74 8.79 -39.16 -0.34 -3.08 16 16 C -0.10 -1.71 5.39 -104.41 -0.56 -2.27 16 17 C 0.51 7.96 3.34 36.01 0.12 8.08 16 18 F -0.18 -2.51 16.07 2.25 0.04 -2.47 16 19 F -0.17 -2.71 17.25 2.25 0.04 -2.67 16 20 F -0.17 -2.82 17.25 2.25 0.04 -2.78 16 21 C -0.17 -2.65 9.12 -39.11 -0.36 -3.01 16 22 C 0.24 4.03 6.75 -82.95 -0.56 3.47 16 23 C 0.23 3.47 8.03 -156.29 -1.26 2.21 16 24 N -0.26 -3.65 12.20 32.15 0.39 -3.26 16 25 N -0.05 -0.64 13.47 60.35 0.81 0.17 16 26 N -0.23 -2.20 7.90 60.35 0.48 -1.72 16 27 H 0.47 2.01 8.96 -340.36 -3.05 -1.04 16 28 N -0.26 -3.47 12.38 32.17 0.40 -3.07 16 29 N -0.51 -9.25 10.32 -8.96 -0.09 -9.34 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.04 0.65 7.62 -51.93 -0.40 0.25 16 32 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.11 2.56 5.95 -51.93 -0.31 2.25 16 35 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 36 H 0.40 7.05 8.67 -40.82 -0.35 6.69 16 37 H 0.16 3.15 6.16 -52.49 -0.32 2.83 16 38 H 0.15 2.08 7.06 -52.49 -0.37 1.71 16 LS Contribution 344.80 15.07 5.20 5.20 Total: -1.00 -26.99 344.80 -7.72 -34.71 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.95 Total: 4.21 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -4.42 Total: 1.35 kcal Atomic # 7 Polarization: -54.92 SS G_CDS: 2.36 Total: -52.56 kcal Atomic # 9 Polarization: -8.04 SS G_CDS: 0.11 Total: -7.93 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -26.99 -7.72 -34.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604014299.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.389 kcal (2) G-P(sol) polarization free energy of solvation -26.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds