Wall clock time and date at job start Wed Apr 1 2020 01:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39726 * 125.78009 * 2 1 4 4 C 1.36153 * 107.86372 * 180.16170 * 3 2 1 5 5 N 1.39354 * 126.26648 * 179.84953 * 4 3 2 6 6 C 1.34779 * 120.00059 * 359.68261 * 5 4 3 7 7 O 1.21595 * 120.00099 * 0.02562 * 6 5 4 8 8 C 1.47604 * 119.99881 * 180.02562 * 6 5 4 9 9 C 1.39820 * 121.08319 * 0.02562 * 8 6 5 10 10 C 1.38155 * 119.36499 * 180.02562 * 9 8 6 11 11 N 1.31852 * 121.55415 * 359.97438 * 10 9 8 12 12 C 1.31986 * 121.98358 * 359.97438 * 11 10 9 13 13 N 1.38262 * 133.70325 * 179.97438 * 12 11 10 14 14 H 0.97000 * 126.38493 * 0.02736 * 13 12 11 15 15 C 1.36387 * 107.23239 * 180.02562 * 13 12 11 16 16 O 1.35185 * 125.06059 * 180.02562 * 15 13 12 17 17 N 1.30994 * 109.88258 * 0.02562 * 15 13 12 18 18 C 1.34635 * 109.66419 * 359.97438 * 17 15 13 19 19 N 1.35815 * 107.46638 * 359.58114 * 4 3 2 20 20 C 1.46499 * 126.09038 * 180.24000 * 19 4 3 21 21 C 1.50695 * 109.47425 * 90.00594 * 20 19 4 22 22 H 1.08007 * 119.99554 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00598 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00490 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99683 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47378 * 89.99829 * 25 23 21 27 27 H 1.48502 * 109.46796 * 210.00003 * 25 23 21 28 28 H 1.48501 * 109.46940 * 329.99465 * 25 23 21 29 29 N 1.30838 * 125.77874 * 179.69185 * 2 1 3 30 30 H 1.08995 * 109.47475 * 270.27884 * 1 2 3 31 31 H 1.08999 * 109.46749 * 30.27984 * 1 2 3 32 32 H 1.09004 * 109.46717 * 150.28016 * 1 2 3 33 33 H 1.08001 * 126.06747 * 0.02562 * 3 2 1 34 34 H 0.97008 * 119.99968 * 179.69109 * 5 4 3 35 35 H 1.07997 * 120.31655 * 359.97438 * 9 8 6 36 36 H 1.08003 * 119.22750 * 180.02562 * 10 9 8 37 37 H 0.96696 * 114.00028 * 269.97414 * 16 15 13 38 38 H 1.09003 * 109.47286 * 210.00382 * 20 19 4 39 39 H 1.08998 * 109.47205 * 330.00015 * 20 19 4 40 40 H 0.97000 * 120.00569 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6194 0.7147 -0.0037 5 7 4.7494 1.5302 -0.0078 6 6 4.6128 2.8710 -0.0150 7 8 3.5036 3.3692 -0.0174 8 6 5.8097 3.7348 -0.0200 9 6 7.0958 3.1862 -0.0180 10 6 8.1914 4.0279 -0.0223 11 7 8.0540 5.3392 -0.0288 12 6 6.8678 5.9179 -0.0321 13 7 6.4474 7.2350 -0.0382 14 1 7.0164 8.0206 -0.0418 15 6 5.0836 7.2239 -0.0383 16 8 4.2980 8.3241 -0.0440 17 7 4.6481 5.9885 -0.0321 18 6 5.6933 5.1397 -0.0282 19 7 3.6088 -0.6434 0.0036 20 6 4.7858 -1.5156 0.0078 21 6 5.1899 -1.8072 1.4300 22 1 4.6265 -1.3847 2.2489 23 6 6.2787 -2.6133 1.6860 24 7 6.6316 -2.8674 2.9271 25 14 7.2536 -3.3435 0.2696 26 1 8.3459 -2.4125 -0.1115 27 1 7.8353 -4.6443 0.6879 28 1 6.3546 -3.5544 -0.8933 29 7 2.2719 -1.0615 0.0057 30 1 -0.3634 0.0050 1.0276 31 1 -0.3633 0.8875 -0.5182 32 1 -0.3633 -0.8925 -0.5095 33 1 1.9875 2.1598 0.0004 34 1 5.6344 1.1328 -0.0057 35 1 7.2315 2.1148 -0.0123 36 1 9.1838 3.6017 -0.0212 37 1 4.0691 8.6484 0.8377 38 1 4.5478 -2.4497 -0.5010 39 1 5.6074 -1.0196 -0.5089 40 1 7.3975 -3.4349 3.1072 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001630806223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:43 Heat of formation + Delta-G solvation = 113.207200 kcal Electronic energy + Delta-G solvation = -28767.496644 eV Core-core repulsion = 24586.527078 eV Total energy + Delta-G solvation = -4180.969566 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.123 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.79296 -40.90389 -39.57946 -38.69463 -37.32124 -34.83587 -34.06715 -33.77471 -32.21726 -31.75798 -29.66924 -29.48364 -28.29724 -26.30114 -25.06405 -23.57430 -22.89210 -22.33730 -21.45412 -19.99048 -19.71394 -19.40631 -18.32863 -17.80768 -17.23122 -17.18214 -16.63554 -16.31421 -15.46016 -15.27329 -15.07746 -14.88635 -14.55238 -14.36693 -14.07580 -13.82030 -13.28978 -13.08702 -12.71909 -12.70821 -12.59350 -12.49676 -12.33250 -11.88372 -11.81892 -11.52291 -11.17172 -11.14330 -10.84667 -10.49108 -10.23824 -10.17619 -9.77263 -9.69648 -9.40753 -9.31602 -8.87279 -8.77246 -7.93876 -7.48374 -6.34013 -4.38643 -0.02258 0.76428 1.68671 2.15716 2.41401 2.62085 3.04169 3.05228 3.16546 3.17612 3.18112 3.46969 3.60154 3.71769 3.96128 4.13305 4.24664 4.35088 4.44021 4.69308 4.91867 5.11453 5.26194 5.31003 5.43091 5.55554 5.66392 6.03058 6.04738 6.04836 6.13053 6.18916 6.23428 6.30179 6.36939 6.65488 6.75459 7.02759 7.19488 7.28737 7.43135 7.44094 7.51945 7.76313 8.15211 8.28310 8.56722 8.72874 9.20425 10.78122 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.010581 B = 0.003599 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.734377 B = 7778.593936 C =10016.435848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 C -0.287 4.287 4 C 0.304 3.696 5 N -0.634 5.634 6 C 0.559 3.441 7 O -0.474 6.474 8 C -0.028 4.028 9 C -0.139 4.139 10 C 0.138 3.862 11 N -0.463 5.463 12 C 0.245 3.755 13 N -0.588 5.588 14 H 0.429 0.571 15 C 0.467 3.533 16 O -0.435 6.435 17 N -0.448 5.448 18 C 0.070 3.930 19 N -0.346 5.346 20 C 0.230 3.770 21 C -0.546 4.546 22 H 0.082 0.918 23 C 0.081 3.919 24 N -0.883 5.883 25 Si 0.870 3.130 26 H -0.270 1.270 27 H -0.279 1.279 28 H -0.263 1.263 29 N -0.280 5.280 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.165 0.835 34 H 0.413 0.587 35 H 0.156 0.844 36 H 0.179 0.821 37 H 0.415 0.585 38 H 0.055 0.945 39 H 0.034 0.966 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.577 19.583 -6.359 20.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C -0.319 4.319 4 C 0.083 3.917 5 N -0.282 5.282 6 C 0.345 3.655 7 O -0.345 6.345 8 C -0.041 4.041 9 C -0.162 4.162 10 C -0.027 4.027 11 N -0.177 5.177 12 C 0.008 3.992 13 N -0.215 5.215 14 H 0.270 0.730 15 C 0.163 3.837 16 O -0.237 6.237 17 N -0.178 5.178 18 C -0.055 4.055 19 N -0.131 5.131 20 C 0.111 3.889 21 C -0.584 4.584 22 H 0.100 0.900 23 C -0.124 4.124 24 N -0.519 5.519 25 Si 0.696 3.304 26 H -0.196 1.196 27 H -0.204 1.204 28 H -0.187 1.187 29 N -0.105 5.105 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.182 0.818 34 H 0.251 0.749 35 H 0.173 0.827 36 H 0.196 0.804 37 H 0.275 0.725 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.847 18.867 -6.829 20.150 hybrid contribution 1.688 0.457 0.059 1.750 sum 3.535 19.324 -6.771 20.779 Atomic orbital electron populations 1.20041 0.87397 1.02405 1.02340 1.22037 0.96606 0.90897 1.01470 1.21314 0.88964 1.00637 1.20957 1.17922 0.87867 0.82985 1.02934 1.42547 1.08322 1.05272 1.72049 1.17705 0.88880 0.80778 0.78178 1.90805 1.25114 1.73376 1.45165 1.19410 0.93642 0.90029 1.01063 1.22361 0.91439 1.02508 0.99896 1.22559 0.99623 0.85800 0.94710 1.66198 1.23841 1.13549 1.14075 1.18509 0.91238 0.84902 1.04531 1.43088 1.07853 1.06814 1.63786 0.73034 1.20431 0.77749 0.87494 0.98069 1.84824 1.64776 1.39120 1.34971 1.70610 1.29103 0.96720 1.21402 1.18910 0.89350 0.92973 1.04225 1.49039 1.06148 1.01788 1.56143 1.19931 0.79284 0.90035 0.99657 1.21209 1.14294 1.32579 0.90336 0.90018 1.24819 0.96631 0.95211 0.95759 1.69871 1.26834 1.36648 1.18544 0.86941 0.80778 0.79829 0.82860 1.19555 1.20379 1.18738 1.77344 0.85776 1.21743 1.25627 0.91135 0.91009 0.91509 0.81812 0.74936 0.82668 0.80374 0.72548 0.92690 0.94799 0.92024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.94 10.44 36.00 0.38 -0.56 16 2 C 0.06 1.11 7.20 -82.46 -0.59 0.51 16 3 C -0.29 -5.92 9.58 -39.78 -0.38 -6.30 16 4 C 0.30 6.37 7.68 -152.76 -1.17 5.20 16 5 N -0.63 -11.08 5.37 -12.27 -0.07 -11.14 16 6 C 0.56 9.56 7.75 -12.44 -0.10 9.46 16 7 O -0.47 -9.37 13.30 5.28 0.07 -9.30 16 8 C -0.03 -0.40 5.93 -104.45 -0.62 -1.02 16 9 C -0.14 -1.48 9.60 -39.02 -0.37 -1.86 16 10 C 0.14 1.29 11.14 -17.57 -0.20 1.09 16 11 N -0.46 -5.11 10.35 -12.25 -0.13 -5.23 16 12 C 0.25 2.89 8.46 -155.42 -1.32 1.58 16 13 N -0.59 -5.12 6.26 -13.33 -0.08 -5.20 16 14 H 0.43 2.21 8.96 -40.82 -0.37 1.84 16 15 C 0.47 4.79 9.39 -88.72 -0.83 3.96 16 16 O -0.44 -3.00 13.62 -17.25 -0.24 -3.24 16 17 N -0.45 -6.54 10.65 -12.06 -0.13 -6.67 16 18 C 0.07 0.99 6.85 -84.60 -0.58 0.41 16 19 N -0.35 -7.89 3.62 -61.45 -0.22 -8.12 16 20 C 0.23 5.30 5.09 -5.20 -0.03 5.27 16 21 C -0.55 -14.65 9.94 -34.44 -0.34 -14.99 16 22 H 0.08 2.52 8.06 -52.48 -0.42 2.10 16 23 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 24 N -0.88 -25.20 13.96 55.43 0.77 -24.43 16 25 Si 0.87 18.97 27.47 -169.99 -4.67 14.30 16 26 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.26 -5.55 6.54 56.52 0.37 -5.18 16 29 N -0.28 -6.43 12.56 33.64 0.42 -6.01 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.16 3.33 5.83 -52.49 -0.31 3.03 16 34 H 0.41 6.28 6.13 -40.82 -0.25 6.03 16 35 H 0.16 1.34 6.53 -52.49 -0.34 0.99 16 36 H 0.18 1.01 8.06 -52.48 -0.42 0.58 16 37 H 0.41 0.55 9.06 45.56 0.41 0.96 16 38 H 0.06 1.29 7.20 -51.93 -0.37 0.92 16 39 H 0.03 0.69 6.95 -51.93 -0.36 0.33 16 40 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 351.94 15.07 5.30 5.30 Total: -1.00 -37.75 351.94 -8.08 -45.84 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -2.87 Total: 9.09 kcal Atomic # 6 Polarization: 11.05 SS G_CDS: -6.25 Total: 4.80 kcal Atomic # 7 Polarization: -67.37 SS G_CDS: 0.57 Total: -66.80 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.16 Total: -12.53 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.67 Total: 14.30 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -37.75 -8.08 -45.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630806223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.042 kcal (2) G-P(sol) polarization free energy of solvation -37.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds