Wall clock time and date at job start Wed Apr 1 2020 01:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39726 * 125.78009 * 2 1 4 4 C 1.36153 * 107.86372 * 180.16170 * 3 2 1 5 5 N 1.39354 * 126.26648 * 179.84953 * 4 3 2 6 6 C 1.34779 * 120.00059 * 359.68261 * 5 4 3 7 7 O 1.21595 * 120.00099 * 0.02562 * 6 5 4 8 8 C 1.47604 * 119.99881 * 180.02562 * 6 5 4 9 9 C 1.39820 * 121.08319 * 0.02562 * 8 6 5 10 10 C 1.38155 * 119.36499 * 180.02562 * 9 8 6 11 11 N 1.31852 * 121.55415 * 359.97438 * 10 9 8 12 12 C 1.31986 * 121.98358 * 359.97438 * 11 10 9 13 13 N 1.38262 * 133.70325 * 179.97438 * 12 11 10 14 14 H 0.97000 * 126.38493 * 0.02736 * 13 12 11 15 15 C 1.36387 * 107.23239 * 180.02562 * 13 12 11 16 16 O 1.35185 * 125.06059 * 180.02562 * 15 13 12 17 17 N 1.30994 * 109.88258 * 0.02562 * 15 13 12 18 18 C 1.34635 * 109.66419 * 359.97438 * 17 15 13 19 19 N 1.35815 * 107.46638 * 359.58114 * 4 3 2 20 20 C 1.46499 * 126.09038 * 180.24000 * 19 4 3 21 21 C 1.50695 * 109.47425 * 90.00594 * 20 19 4 22 22 H 1.08007 * 119.99554 * 359.97438 * 21 20 19 23 23 C 1.37874 * 120.00598 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00490 * 179.97438 * 23 21 20 25 25 Si 1.86803 * 119.99683 * 0.02562 * 23 21 20 26 26 H 1.48494 * 109.47378 * 89.99829 * 25 23 21 27 27 H 1.48502 * 109.46796 * 210.00003 * 25 23 21 28 28 H 1.48501 * 109.46940 * 329.99465 * 25 23 21 29 29 N 1.30838 * 125.77874 * 179.69185 * 2 1 3 30 30 H 1.08995 * 109.47475 * 270.27884 * 1 2 3 31 31 H 1.08999 * 109.46749 * 30.27984 * 1 2 3 32 32 H 1.09004 * 109.46717 * 150.28016 * 1 2 3 33 33 H 1.08001 * 126.06747 * 0.02562 * 3 2 1 34 34 H 0.97008 * 119.99968 * 179.69109 * 5 4 3 35 35 H 1.07997 * 120.31655 * 359.97438 * 9 8 6 36 36 H 1.08003 * 119.22750 * 180.02562 * 10 9 8 37 37 H 0.96696 * 114.00028 * 269.97414 * 16 15 13 38 38 H 1.09003 * 109.47286 * 210.00382 * 20 19 4 39 39 H 1.08998 * 109.47205 * 330.00015 * 20 19 4 40 40 H 0.97000 * 120.00569 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6194 0.7147 -0.0037 5 7 4.7494 1.5302 -0.0078 6 6 4.6128 2.8710 -0.0150 7 8 3.5036 3.3692 -0.0174 8 6 5.8097 3.7348 -0.0200 9 6 7.0958 3.1862 -0.0180 10 6 8.1914 4.0279 -0.0223 11 7 8.0540 5.3392 -0.0288 12 6 6.8678 5.9179 -0.0321 13 7 6.4474 7.2350 -0.0382 14 1 7.0164 8.0206 -0.0418 15 6 5.0836 7.2239 -0.0383 16 8 4.2980 8.3241 -0.0440 17 7 4.6481 5.9885 -0.0321 18 6 5.6933 5.1397 -0.0282 19 7 3.6088 -0.6434 0.0036 20 6 4.7858 -1.5156 0.0078 21 6 5.1899 -1.8072 1.4300 22 1 4.6265 -1.3847 2.2489 23 6 6.2787 -2.6133 1.6860 24 7 6.6316 -2.8674 2.9271 25 14 7.2536 -3.3435 0.2696 26 1 8.3459 -2.4125 -0.1115 27 1 7.8353 -4.6443 0.6879 28 1 6.3546 -3.5544 -0.8933 29 7 2.2719 -1.0615 0.0057 30 1 -0.3634 0.0050 1.0276 31 1 -0.3633 0.8875 -0.5182 32 1 -0.3633 -0.8925 -0.5095 33 1 1.9875 2.1598 0.0004 34 1 5.6344 1.1328 -0.0057 35 1 7.2315 2.1148 -0.0123 36 1 9.1838 3.6017 -0.0212 37 1 4.0691 8.6484 0.8377 38 1 4.5478 -2.4497 -0.5010 39 1 5.6074 -1.0196 -0.5089 40 1 7.3975 -3.4349 3.1072 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001630806223.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:41 Heat of formation + Delta-G solvation = 80.987886 kcal Electronic energy + Delta-G solvation = -28768.893779 eV Core-core repulsion = 24586.527078 eV Total energy + Delta-G solvation = -4182.366701 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.123 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.63388 -42.43801 -40.77381 -39.68989 -38.00651 -36.34391 -35.57692 -34.96425 -33.97905 -32.75396 -31.08372 -30.49969 -29.83953 -27.99455 -26.13150 -24.49413 -24.30024 -23.63191 -22.58223 -21.38078 -21.12004 -20.20259 -19.34828 -19.21921 -18.84970 -18.16446 -18.10553 -17.25344 -16.79000 -16.51023 -16.35823 -16.07349 -15.71462 -15.50804 -15.36804 -15.25341 -14.85559 -14.40776 -14.14756 -13.99082 -13.79508 -13.49740 -13.47614 -13.21511 -13.14236 -12.91515 -12.50366 -12.42763 -12.11317 -12.00261 -11.84578 -11.77362 -11.60610 -11.16615 -10.86848 -10.41384 -10.19479 -9.63963 -9.59377 -9.09509 -8.38083 -6.51421 -0.94405 -0.06138 0.82423 0.96471 1.18926 1.37331 1.39417 1.43418 1.52473 1.70836 2.03334 2.09858 2.29410 2.44459 2.66727 2.93060 3.05923 3.35754 3.47079 3.66247 3.76988 3.90422 4.14165 4.30967 4.41896 4.46761 4.58776 4.62435 4.69089 4.80987 4.82188 4.88987 4.96040 5.14247 5.20596 5.23696 5.33135 5.69888 5.87854 5.95997 6.13634 6.32572 6.44625 6.47668 6.52829 6.67656 6.84935 6.95562 7.13631 8.78248 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.010581 B = 0.003599 C = 0.002795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.734377 B = 7778.593936 C =10016.435848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.062 3.938 3 C -0.304 4.304 4 C 0.303 3.697 5 N -0.629 5.629 6 C 0.561 3.439 7 O -0.508 6.508 8 C -0.059 4.059 9 C -0.123 4.123 10 C 0.144 3.856 11 N -0.462 5.462 12 C 0.238 3.762 13 N -0.568 5.568 14 H 0.447 0.553 15 C 0.486 3.514 16 O -0.432 6.432 17 N -0.507 5.507 18 C 0.046 3.954 19 N -0.366 5.366 20 C 0.237 3.763 21 C -0.555 4.555 22 H 0.021 0.979 23 C 0.027 3.973 24 N -0.934 5.934 25 Si 0.948 3.052 26 H -0.236 1.236 27 H -0.283 1.283 28 H -0.249 1.249 29 N -0.323 5.323 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.165 0.835 34 H 0.423 0.577 35 H 0.176 0.824 36 H 0.223 0.777 37 H 0.440 0.560 38 H 0.053 0.947 39 H 0.070 0.930 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.698 20.690 -8.171 22.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.104 4.104 3 C -0.336 4.336 4 C 0.081 3.919 5 N -0.278 5.278 6 C 0.349 3.651 7 O -0.381 6.381 8 C -0.072 4.072 9 C -0.145 4.145 10 C -0.021 4.021 11 N -0.175 5.175 12 C 0.001 3.999 13 N -0.197 5.197 14 H 0.291 0.709 15 C 0.181 3.819 16 O -0.238 6.238 17 N -0.239 5.239 18 C -0.078 4.078 19 N -0.151 5.151 20 C 0.118 3.882 21 C -0.593 4.593 22 H 0.039 0.961 23 C -0.174 4.174 24 N -0.572 5.572 25 Si 0.768 3.232 26 H -0.159 1.159 27 H -0.208 1.208 28 H -0.173 1.173 29 N -0.148 5.148 30 H 0.101 0.899 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.182 0.818 34 H 0.262 0.738 35 H 0.193 0.807 36 H 0.239 0.761 37 H 0.304 0.696 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.983 20.052 -8.626 22.189 hybrid contribution 0.951 0.279 0.735 1.234 sum 4.934 20.330 -7.891 22.359 Atomic orbital electron populations 1.20238 0.83910 1.04210 1.03661 1.22841 0.98764 0.89905 0.98883 1.21488 0.89337 1.00850 1.21875 1.18248 0.89212 0.82749 1.01713 1.42614 1.07875 1.05284 1.72031 1.18275 0.89677 0.80492 0.76699 1.90764 1.26787 1.73800 1.46705 1.19307 0.93481 0.89816 1.04629 1.22668 0.90376 1.03757 0.97746 1.23289 1.00873 0.85056 0.92875 1.66352 1.23106 1.14359 1.13695 1.18634 0.90762 0.85641 1.04895 1.42957 1.07518 1.06581 1.62664 0.70916 1.20392 0.78408 0.87344 0.95718 1.84800 1.64151 1.37682 1.37192 1.70526 1.30557 0.98493 1.24275 1.19139 0.90389 0.93304 1.05000 1.48988 1.06140 1.02350 1.57660 1.19799 0.80504 0.90689 0.97230 1.21208 1.14216 1.33030 0.90865 0.96060 1.25821 0.97525 0.95050 0.98995 1.70037 1.27851 1.37714 1.21573 0.85730 0.79700 0.79012 0.78734 1.15900 1.20821 1.17300 1.77281 0.86261 1.23328 1.27891 0.89903 0.88620 0.90270 0.81783 0.73788 0.80693 0.76100 0.69576 0.92944 0.91206 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.78 10.44 71.24 0.74 -1.04 16 2 C 0.06 2.50 7.20 43.07 0.31 2.82 16 3 C -0.30 -12.85 9.58 22.14 0.21 -12.64 16 4 C 0.30 12.95 7.68 131.19 1.01 13.96 16 5 N -0.63 -22.22 5.37 -310.99 -1.67 -23.89 16 6 C 0.56 19.63 7.75 86.72 0.67 20.30 16 7 O -0.51 -20.91 13.30 -4.01 -0.05 -20.96 16 8 C -0.06 -1.66 5.93 -19.75 -0.12 -1.77 16 9 C -0.12 -2.38 9.60 22.63 0.22 -2.16 16 10 C 0.14 2.23 11.14 84.67 0.94 3.17 16 11 N -0.46 -9.00 10.35 -192.68 -1.99 -10.99 16 12 C 0.24 5.27 8.46 133.87 1.13 6.40 16 13 N -0.57 -8.94 6.26 -307.03 -1.92 -10.86 16 14 H 0.45 3.55 8.96 -92.71 -0.83 2.72 16 15 C 0.49 9.52 9.39 179.69 1.69 11.20 16 16 O -0.43 -5.27 13.62 -84.65 -1.15 -6.42 16 17 N -0.51 -14.94 10.65 -305.83 -3.26 -18.19 16 18 C 0.05 1.30 6.85 40.03 0.27 1.58 16 19 N -0.37 -17.02 3.62 -348.34 -1.26 -18.29 16 20 C 0.24 10.89 5.09 85.63 0.44 11.33 16 21 C -0.56 -30.65 9.94 25.60 0.25 -30.40 16 22 H 0.02 1.39 8.06 -2.91 -0.02 1.37 16 23 C 0.03 1.41 5.47 84.65 0.46 1.88 16 24 N -0.93 -54.57 13.96 21.45 0.30 -54.27 16 25 Si 0.95 37.90 27.47 68.60 1.88 39.79 16 26 H -0.24 -8.15 7.11 99.48 0.71 -7.44 16 27 H -0.28 -11.47 7.11 99.48 0.71 -10.77 16 28 H -0.25 -9.39 6.54 99.48 0.65 -8.74 16 29 N -0.32 -15.16 12.56 -47.47 -0.60 -15.76 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 32 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.16 6.91 5.83 -2.91 -0.02 6.90 16 34 H 0.42 12.61 6.13 -92.70 -0.57 12.04 16 35 H 0.18 2.55 6.53 -2.91 -0.02 2.53 16 36 H 0.22 1.41 8.06 -2.91 -0.02 1.38 16 37 H 0.44 0.31 9.06 -74.06 -0.67 -0.36 16 38 H 0.05 2.42 7.20 -2.39 -0.02 2.41 16 39 H 0.07 2.68 6.95 -2.39 -0.02 2.66 16 40 H 0.27 14.73 8.31 -92.71 -0.77 13.95 16 Total: -1.00 -87.60 351.94 -2.44 -90.04 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: -0.95 Total: 25.19 kcal Atomic # 6 Polarization: 16.39 SS G_CDS: 8.24 Total: 24.62 kcal Atomic # 7 Polarization: -141.85 SS G_CDS: -10.40 Total: -152.25 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -1.21 Total: -27.39 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 1.88 Total: 39.79 kcal Total: -87.60 -2.44 -90.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630806223.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.024 kcal (2) G-P(sol) polarization free energy of solvation -87.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds