Wall clock time and date at job start Wed Apr 1 2020 00:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00146 * 2 1 4 4 H 1.48491 * 109.47425 * 239.99724 * 3 2 1 5 5 H 1.48504 * 109.47195 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47290 * 119.99615 * 3 2 1 7 7 C 1.37876 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99926 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00334 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.52461 * 299.92007 * 9 7 2 11 11 C 1.53346 * 109.68835 * 179.75168 * 9 7 2 12 12 C 1.53034 * 109.61010 * 178.74685 * 11 9 7 13 13 C 1.53188 * 109.31404 * 61.37429 * 12 11 9 14 14 N 1.46933 * 108.77495 * 305.36890 * 13 12 11 15 15 C 1.34778 * 120.62741 * 233.58614 * 14 13 12 16 16 O 1.21279 * 120.00169 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00023 * 0.02562 * 15 14 13 18 18 N 1.46502 * 109.47041 * 180.02562 * 17 15 14 19 19 C 1.34949 * 126.04174 * 125.00104 * 18 17 15 20 20 C 1.35314 * 107.74699 * 179.97438 * 19 18 17 21 21 S 1.76205 * 126.03606 * 179.97438 * 20 19 18 22 22 N 1.65597 * 107.21651 * 89.99959 * 21 20 19 23 23 O 1.42097 * 106.39924 * 203.53990 * 21 20 19 24 24 O 1.42099 * 106.40130 * 336.45803 * 21 20 19 25 25 C 1.39861 * 107.92208 * 359.97438 * 20 19 18 26 26 N 1.30843 * 108.20522 * 359.73938 * 25 20 19 27 27 C 1.46919 * 118.74003 * 53.60503 * 14 13 12 28 28 H 0.96996 * 119.99912 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.41979 * 58.70908 * 11 9 7 30 30 H 1.09000 * 109.43268 * 298.79665 * 11 9 7 31 31 H 1.08994 * 109.50232 * 301.42239 * 12 11 9 32 32 H 1.09000 * 109.49784 * 181.32304 * 12 11 9 33 33 H 1.08994 * 109.59289 * 185.57924 * 13 12 11 34 34 H 1.09002 * 109.58818 * 65.14921 * 13 12 11 35 35 H 1.09001 * 109.47488 * 299.99559 * 17 15 14 36 36 H 1.09001 * 109.47269 * 59.99982 * 17 15 14 37 37 H 1.08004 * 126.12282 * 359.97438 * 19 18 17 38 38 H 0.96998 * 120.00246 * 0.02562 * 22 21 20 39 39 H 0.97006 * 119.99775 * 179.97438 * 22 21 20 40 40 H 1.08001 * 125.90158 * 179.97438 * 25 20 19 41 41 H 1.09002 * 109.58751 * 66.18300 * 27 14 13 42 42 H 1.08996 * 109.58750 * 186.46484 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6248 -2.5583 0.8907 11 6 2.2431 -3.6685 -0.0051 12 6 1.4766 -4.9926 0.0265 13 6 0.5981 -5.0993 -1.2239 14 7 -0.2583 -3.9080 -1.3034 15 6 -1.5952 -4.0300 -1.4230 16 8 -2.2912 -3.0390 -1.4881 17 6 -2.2252 -5.3980 -1.4758 18 7 -3.6779 -5.2618 -1.6071 19 6 -4.4432 -5.8138 -2.5719 20 6 -5.7258 -5.4512 -2.3389 21 16 -7.1245 -5.9070 -3.3089 22 7 -7.7148 -7.3220 -2.6830 23 8 -8.1169 -4.9182 -3.0713 24 8 -6.6304 -6.2167 -4.6047 25 6 -5.7453 -4.6508 -1.1921 26 7 -4.5190 -4.5414 -0.7491 27 6 0.3705 -2.5812 -1.2504 28 1 -0.4850 0.8400 0.0004 29 1 2.8877 -3.6011 0.8713 30 1 2.8523 -3.6229 -0.9078 31 1 0.8484 -5.0283 0.9165 32 1 2.1836 -5.8219 0.0461 33 1 -0.0235 -5.9923 -1.1588 34 1 1.2296 -5.1550 -2.1106 35 1 -1.8331 -5.9458 -2.3327 36 1 -1.9921 -5.9410 -0.5599 37 1 -4.0943 -6.4338 -3.3845 38 1 -7.2828 -7.7311 -1.9170 39 1 -8.4933 -7.7413 -3.0821 40 1 -6.6217 -4.2037 -0.7467 41 1 0.9836 -2.4316 -2.1392 42 1 -0.4010 -1.8127 -1.2052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647299424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:06 Heat of formation + Delta-G solvation = -28.572082 kcal Electronic energy + Delta-G solvation = -27731.957608 eV Core-core repulsion = 23647.991231 eV Total energy + Delta-G solvation = -4083.966377 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.53039 -39.52863 -37.15631 -36.87566 -35.87046 -33.82538 -33.37802 -33.24509 -31.91142 -30.67382 -29.99814 -28.02784 -25.16254 -24.50821 -22.21287 -22.01355 -21.69324 -20.05801 -19.51740 -18.70884 -18.16307 -17.54906 -17.21300 -16.80323 -16.23660 -15.72480 -15.61608 -15.28892 -15.00847 -14.63824 -14.50754 -14.15968 -13.87427 -13.54209 -13.24954 -12.96051 -12.72247 -12.65253 -12.28157 -12.20239 -12.13194 -12.04229 -11.97616 -11.74657 -11.10528 -10.97795 -10.69872 -10.67854 -10.61494 -10.53380 -10.32721 -10.02282 -10.00870 -9.56595 -9.32614 -9.21556 -8.95759 -8.50319 -7.93271 -6.05375 -4.15127 0.37094 1.32679 2.11255 2.25124 2.89226 3.16653 3.27881 3.34740 3.35759 3.42672 3.60467 4.11833 4.34278 4.38073 4.54018 4.58630 4.79051 4.89818 5.04748 5.24235 5.28985 5.32282 5.37612 5.47313 5.76241 5.80144 5.99649 6.17076 6.24576 6.43030 6.50313 6.54413 6.72143 6.77871 6.84886 6.99249 7.10679 7.34651 7.53312 7.76633 7.88750 8.05118 8.30006 8.59730 8.88708 9.51149 10.99710 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.018922 B = 0.002545 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.418978 B =10998.363678 C =12008.585411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.063 3.937 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.042 3.958 10 H 0.029 0.971 11 C -0.112 4.112 12 C -0.134 4.134 13 C 0.106 3.894 14 N -0.603 5.603 15 C 0.491 3.509 16 O -0.505 6.505 17 C 0.101 3.899 18 N -0.338 5.338 19 C 0.178 3.822 20 C -0.816 4.816 21 S 2.738 3.262 22 N -1.254 6.254 23 O -0.967 6.967 24 O -0.974 6.974 25 C 0.122 3.878 26 N -0.248 5.248 27 C 0.113 3.887 28 H 0.265 0.735 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.193 0.807 38 H 0.415 0.585 39 H 0.417 0.583 40 H 0.199 0.801 41 H 0.044 0.956 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.932 -20.700 -4.133 22.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.140 4.140 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.563 4.563 8 H 0.076 0.924 9 C 0.023 3.977 10 H 0.047 0.953 11 C -0.150 4.150 12 C -0.172 4.172 13 C -0.018 4.018 14 N -0.337 5.337 15 C 0.275 3.725 16 O -0.379 6.379 17 C -0.024 4.024 18 N -0.113 5.113 19 C 0.023 3.977 20 C -0.917 4.917 21 S 2.825 3.175 22 N -0.927 5.927 23 O -0.956 6.956 24 O -0.963 6.963 25 C -0.070 4.070 26 N -0.066 5.066 27 C -0.007 4.007 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.210 0.790 38 H 0.242 0.758 39 H 0.247 0.753 40 H 0.215 0.785 41 H 0.062 0.938 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -8.752 -18.843 -4.019 21.162 hybrid contribution 0.530 0.058 0.107 0.544 sum -8.222 -18.785 -3.912 20.875 Atomic orbital electron populations 1.69864 1.05751 1.27137 1.48865 1.25064 0.94893 0.99350 0.94728 0.86632 0.79559 0.83083 0.78589 1.20224 1.21211 1.20240 1.21007 0.92874 0.90031 1.52346 0.92351 1.19012 0.92543 0.92321 0.93872 0.95310 1.21685 0.98594 0.93955 1.00747 1.21942 0.98667 0.99361 0.97253 1.21713 0.93757 0.87124 0.99188 1.48528 1.04593 1.09445 1.71117 1.20111 0.83205 0.89970 0.79246 1.90830 1.60796 1.38175 1.48088 1.21930 0.75210 0.99161 1.06142 1.48795 1.06963 1.35970 1.19594 1.22507 0.89520 0.93849 0.91818 1.31074 1.14973 1.25309 1.20297 1.00339 0.72568 0.72255 0.72327 1.53161 1.45549 1.46002 1.48019 1.93585 1.58067 1.58555 1.85381 1.93576 1.81136 1.84208 1.37406 1.23633 0.96408 0.94607 0.92304 1.77751 1.00428 1.13425 1.14955 1.22370 0.98697 0.80826 0.98772 0.92471 0.92860 0.93076 0.92044 0.91980 0.91563 0.91466 0.85633 0.86300 0.78992 0.75802 0.75338 0.78476 0.93755 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.57 11.39 55.43 0.63 -24.94 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 3 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -13.88 8.57 -34.44 -0.30 -14.18 16 8 H 0.06 1.51 7.75 -52.48 -0.41 1.10 16 9 C 0.04 0.99 2.27 -91.49 -0.21 0.78 16 10 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 11 C -0.11 -2.07 5.13 -26.53 -0.14 -2.21 16 12 C -0.13 -1.89 6.08 -26.62 -0.16 -2.05 16 13 C 0.11 1.36 6.34 -3.71 -0.02 1.33 16 14 N -0.60 -10.89 2.97 -172.77 -0.51 -11.40 16 15 C 0.49 8.98 7.73 -10.99 -0.08 8.89 16 16 O -0.50 -12.10 15.13 5.56 0.08 -12.02 16 17 C 0.10 1.18 5.34 -5.19 -0.03 1.16 16 18 N -0.34 -4.57 3.39 -62.54 -0.21 -4.78 16 19 C 0.18 1.88 11.19 -17.22 -0.19 1.69 16 20 C -0.82 -9.02 6.14 -40.02 -0.25 -9.26 16 21 S 2.74 26.25 6.42 -107.50 -0.69 25.55 16 22 N -1.25 -6.26 9.55 60.35 0.58 -5.69 16 23 O -0.97 -12.79 17.87 -57.17 -1.02 -13.82 16 24 O -0.97 -12.11 17.85 -57.17 -1.02 -13.13 16 25 C 0.12 1.60 11.81 -17.37 -0.21 1.40 16 26 N -0.25 -4.06 11.66 30.62 0.36 -3.70 16 27 C 0.11 2.61 5.39 -3.71 -0.02 2.59 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 29 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.57 5.93 -51.93 -0.31 0.27 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.13 0.89 7.87 -51.93 -0.41 0.49 16 36 H 0.12 1.13 7.69 -51.93 -0.40 0.73 16 37 H 0.19 1.22 8.06 -52.48 -0.42 0.80 16 38 H 0.42 1.18 8.92 -34.47 -0.31 0.87 16 39 H 0.42 1.39 8.96 -34.47 -0.31 1.09 16 40 H 0.20 2.09 8.06 -52.49 -0.42 1.67 16 41 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.12 3.43 5.12 -51.93 -0.27 3.16 16 LS Contribution 362.05 15.07 5.46 5.46 Total: -1.00 -40.20 362.05 -8.41 -48.62 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.34 Total: 1.94 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -1.69 Total: -8.22 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.84 Total: -50.51 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -1.96 Total: -38.97 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 26.25 SS G_CDS: -0.69 Total: 25.55 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -40.20 -8.41 -48.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647299424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.043 kcal (2) G-P(sol) polarization free energy of solvation -40.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds