Wall clock time and date at job start Wed Apr 1 2020 00:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00146 * 2 1 4 4 H 1.48491 * 109.47425 * 239.99724 * 3 2 1 5 5 H 1.48504 * 109.47195 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47290 * 119.99615 * 3 2 1 7 7 C 1.37876 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99926 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00334 * 0.02562 * 7 2 1 10 10 H 1.09002 * 109.52461 * 299.92007 * 9 7 2 11 11 C 1.53346 * 109.68835 * 179.75168 * 9 7 2 12 12 C 1.53034 * 109.61010 * 178.74685 * 11 9 7 13 13 C 1.53188 * 109.31404 * 61.37429 * 12 11 9 14 14 N 1.46933 * 108.77495 * 305.36890 * 13 12 11 15 15 C 1.34778 * 120.62741 * 233.58614 * 14 13 12 16 16 O 1.21279 * 120.00169 * 180.02562 * 15 14 13 17 17 C 1.50698 * 120.00023 * 0.02562 * 15 14 13 18 18 N 1.46502 * 109.47041 * 180.02562 * 17 15 14 19 19 C 1.34949 * 126.04174 * 125.00104 * 18 17 15 20 20 C 1.35314 * 107.74699 * 179.97438 * 19 18 17 21 21 S 1.76205 * 126.03606 * 179.97438 * 20 19 18 22 22 N 1.65597 * 107.21651 * 89.99959 * 21 20 19 23 23 O 1.42097 * 106.39924 * 203.53990 * 21 20 19 24 24 O 1.42099 * 106.40130 * 336.45803 * 21 20 19 25 25 C 1.39861 * 107.92208 * 359.97438 * 20 19 18 26 26 N 1.30843 * 108.20522 * 359.73938 * 25 20 19 27 27 C 1.46919 * 118.74003 * 53.60503 * 14 13 12 28 28 H 0.96996 * 119.99912 * 359.97438 * 1 2 3 29 29 H 1.08999 * 109.41979 * 58.70908 * 11 9 7 30 30 H 1.09000 * 109.43268 * 298.79665 * 11 9 7 31 31 H 1.08994 * 109.50232 * 301.42239 * 12 11 9 32 32 H 1.09000 * 109.49784 * 181.32304 * 12 11 9 33 33 H 1.08994 * 109.59289 * 185.57924 * 13 12 11 34 34 H 1.09002 * 109.58818 * 65.14921 * 13 12 11 35 35 H 1.09001 * 109.47488 * 299.99559 * 17 15 14 36 36 H 1.09001 * 109.47269 * 59.99982 * 17 15 14 37 37 H 1.08004 * 126.12282 * 359.97438 * 19 18 17 38 38 H 0.96998 * 120.00246 * 0.02562 * 22 21 20 39 39 H 0.97006 * 119.99775 * 179.97438 * 22 21 20 40 40 H 1.08001 * 125.90158 * 179.97438 * 25 20 19 41 41 H 1.09002 * 109.58751 * 66.18300 * 27 14 13 42 42 H 1.08996 * 109.58750 * 186.46484 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6248 -2.5583 0.8907 11 6 2.2431 -3.6685 -0.0051 12 6 1.4766 -4.9926 0.0265 13 6 0.5981 -5.0993 -1.2239 14 7 -0.2583 -3.9080 -1.3034 15 6 -1.5952 -4.0300 -1.4230 16 8 -2.2912 -3.0390 -1.4881 17 6 -2.2252 -5.3980 -1.4758 18 7 -3.6779 -5.2618 -1.6071 19 6 -4.4432 -5.8138 -2.5719 20 6 -5.7258 -5.4512 -2.3389 21 16 -7.1245 -5.9070 -3.3089 22 7 -7.7148 -7.3220 -2.6830 23 8 -8.1169 -4.9182 -3.0713 24 8 -6.6304 -6.2167 -4.6047 25 6 -5.7453 -4.6508 -1.1921 26 7 -4.5190 -4.5414 -0.7491 27 6 0.3705 -2.5812 -1.2504 28 1 -0.4850 0.8400 0.0004 29 1 2.8877 -3.6011 0.8713 30 1 2.8523 -3.6229 -0.9078 31 1 0.8484 -5.0283 0.9165 32 1 2.1836 -5.8219 0.0461 33 1 -0.0235 -5.9923 -1.1588 34 1 1.2296 -5.1550 -2.1106 35 1 -1.8331 -5.9458 -2.3327 36 1 -1.9921 -5.9410 -0.5599 37 1 -4.0943 -6.4338 -3.3845 38 1 -7.2828 -7.7311 -1.9170 39 1 -8.4933 -7.7413 -3.0821 40 1 -6.6217 -4.2037 -0.7467 41 1 0.9836 -2.4316 -2.1392 42 1 -0.4010 -1.8127 -1.2052 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647299424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:05 Heat of formation + Delta-G solvation = -63.754998 kcal Electronic energy + Delta-G solvation = -27733.483254 eV Core-core repulsion = 23647.991231 eV Total energy + Delta-G solvation = -4085.492023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.47235 -40.91867 -38.38431 -38.05425 -36.77395 -35.43119 -34.53871 -33.88738 -33.45352 -31.69557 -31.51185 -29.16177 -26.98240 -25.92023 -23.50938 -23.05792 -22.79744 -21.43712 -20.36929 -19.91458 -19.12525 -18.66054 -18.23538 -18.05712 -17.59185 -16.84819 -16.60487 -16.50998 -16.40001 -15.91560 -15.72919 -15.31938 -15.17940 -14.82278 -14.55183 -14.27269 -14.08884 -14.00594 -13.54567 -13.39062 -13.11805 -13.06534 -12.97432 -12.89405 -12.76739 -12.67714 -12.31130 -12.29503 -11.83120 -11.66670 -11.62826 -11.27503 -11.20119 -11.01515 -10.95253 -10.59702 -10.54320 -10.26632 -9.46217 -8.15431 -6.32976 -0.39795 0.48668 1.24139 1.30655 1.36881 1.38016 1.46619 1.58267 2.13503 2.38021 2.45681 2.87667 3.12213 3.24650 3.41078 3.70692 3.82915 3.95779 4.04451 4.09775 4.17919 4.31826 4.45627 4.53768 4.59792 4.72191 4.78513 4.85715 5.09540 5.23023 5.26482 5.31247 5.33157 5.41951 5.50003 5.58384 5.70728 5.87234 5.97016 6.28882 6.40733 6.48719 6.58224 6.80851 7.23534 7.38010 8.86937 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.018922 B = 0.002545 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.418978 B =10998.363678 C =12008.585411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.008 3.992 3 Si 0.956 3.044 4 H -0.265 1.265 5 H -0.292 1.292 6 H -0.267 1.267 7 C -0.536 4.536 8 H 0.063 0.937 9 C 0.039 3.961 10 H -0.018 1.018 11 C -0.108 4.108 12 C -0.128 4.128 13 C 0.098 3.902 14 N -0.606 5.606 15 C 0.478 3.522 16 O -0.578 6.578 17 C 0.109 3.891 18 N -0.351 5.351 19 C 0.189 3.811 20 C -0.821 4.821 21 S 2.770 3.230 22 N -1.233 6.233 23 O -1.007 7.007 24 O -0.999 6.999 25 C 0.114 3.886 26 N -0.312 5.312 27 C 0.127 3.873 28 H 0.258 0.742 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.108 0.892 33 H 0.124 0.876 34 H 0.089 0.911 35 H 0.187 0.813 36 H 0.149 0.851 37 H 0.241 0.759 38 H 0.429 0.571 39 H 0.428 0.572 40 H 0.208 0.792 41 H 0.037 0.963 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.730 -24.760 -5.274 26.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.191 4.191 3 Si 0.781 3.219 4 H -0.190 1.190 5 H -0.218 1.218 6 H -0.192 1.192 7 C -0.575 4.575 8 H 0.081 0.919 9 C 0.020 3.980 10 H 0.000 1.000 11 C -0.145 4.145 12 C -0.166 4.166 13 C -0.023 4.023 14 N -0.339 5.339 15 C 0.265 3.735 16 O -0.457 6.457 17 C -0.014 4.014 18 N -0.127 5.127 19 C 0.035 3.965 20 C -0.920 4.920 21 S 2.856 3.144 22 N -0.913 5.913 23 O -0.996 6.996 24 O -0.988 6.988 25 C -0.076 4.076 26 N -0.130 5.130 27 C 0.004 3.996 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.127 0.873 33 H 0.142 0.858 34 H 0.107 0.893 35 H 0.204 0.796 36 H 0.167 0.833 37 H 0.257 0.743 38 H 0.259 0.741 39 H 0.261 0.739 40 H 0.225 0.775 41 H 0.056 0.944 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.509 -22.975 -5.146 24.713 hybrid contribution 0.152 1.275 0.478 1.370 sum -7.357 -21.700 -4.668 23.384 Atomic orbital electron populations 1.70095 1.07490 1.27210 1.50673 1.25915 0.95502 1.03038 0.94678 0.85635 0.78262 0.78756 0.79204 1.19015 1.21773 1.19187 1.21518 0.93326 0.91593 1.51035 0.91904 1.18947 0.93102 0.93860 0.92114 0.99952 1.21581 0.97652 0.94407 1.00909 1.21923 0.99168 0.97894 0.97616 1.22184 0.94134 0.86601 0.99335 1.48519 1.05574 1.09142 1.70631 1.21334 0.82719 0.92143 0.77277 1.90801 1.62376 1.41409 1.51089 1.22184 0.74154 0.94702 1.10360 1.48883 1.07430 1.36371 1.20035 1.23303 0.88924 0.92854 0.91385 1.31205 1.16001 1.25191 1.19599 0.99211 0.71476 0.72243 0.71438 1.52659 1.45841 1.44425 1.48362 1.93542 1.59331 1.60882 1.85834 1.93545 1.81464 1.84696 1.39095 1.23962 0.96121 0.94492 0.93066 1.77666 1.01905 1.15826 1.17589 1.21639 0.96949 0.83064 0.97921 0.93339 0.93296 0.92288 0.93115 0.87325 0.85830 0.89312 0.79609 0.83320 0.74320 0.74123 0.73909 0.77522 0.94439 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.91 11.39 21.45 0.24 -56.66 16 2 C 0.01 0.45 5.30 84.65 0.45 0.90 16 3 Si 0.96 44.78 29.54 68.60 2.03 46.80 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 7 C -0.54 -29.41 8.57 25.60 0.22 -29.19 16 8 H 0.06 3.29 7.75 -2.91 -0.02 3.27 16 9 C 0.04 1.92 2.27 -11.36 -0.03 1.90 16 10 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 11 C -0.11 -3.87 5.13 30.72 0.16 -3.71 16 12 C -0.13 -3.15 6.08 30.67 0.19 -2.96 16 13 C 0.10 2.09 6.34 86.36 0.55 2.63 16 14 N -0.61 -21.42 2.97 -818.92 -2.44 -23.86 16 15 C 0.48 17.31 7.73 87.66 0.68 17.98 16 16 O -0.58 -29.24 15.13 -3.03 -0.05 -29.28 16 17 C 0.11 2.17 5.34 85.63 0.46 2.63 16 18 N -0.35 -8.77 3.39 -351.79 -1.19 -9.96 16 19 C 0.19 3.42 11.19 83.54 0.93 4.35 16 20 C -0.82 -16.93 6.14 21.99 0.13 -16.79 16 21 S 2.77 48.89 6.42 -56.49 -0.36 48.52 16 22 N -1.23 -9.22 9.55 37.02 0.35 -8.86 16 23 O -1.01 -26.31 17.87 -128.00 -2.29 -28.60 16 24 O -1.00 -22.80 17.85 -128.00 -2.28 -25.08 16 25 C 0.11 3.05 11.81 85.23 1.01 4.05 16 26 N -0.31 -10.35 11.66 -57.03 -0.66 -11.01 16 27 C 0.13 6.13 5.39 86.36 0.47 6.59 16 28 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 29 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 30 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.12 1.26 5.93 -2.39 -0.01 1.25 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.19 1.37 7.87 -2.39 -0.02 1.35 16 36 H 0.15 2.08 7.69 -2.39 -0.02 2.06 16 37 H 0.24 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.43 1.18 8.92 -96.75 -0.86 0.31 16 39 H 0.43 1.75 8.96 -96.74 -0.87 0.88 16 40 H 0.21 4.62 8.06 -2.91 -0.02 4.60 16 41 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.07 4.17 5.12 -2.39 -0.01 4.16 16 Total: -1.00 -99.41 362.05 -2.09 -101.50 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -0.65 Total: 8.12 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: 5.21 Total: -11.62 kcal Atomic # 7 Polarization: -106.66 SS G_CDS: -3.70 Total: -110.36 kcal Atomic # 8 Polarization: -78.35 SS G_CDS: -4.62 Total: -82.97 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 16 Polarization: 48.89 SS G_CDS: -0.36 Total: 48.52 kcal Total: -99.41 -2.09 -101.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647299424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.742 kcal (2) G-P(sol) polarization free energy of solvation -99.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds