Wall clock time and date at job start Wed Apr 1 2020 00:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99943 * 2 1 4 4 H 1.48495 * 109.47293 * 270.00431 * 3 2 1 5 5 H 1.48500 * 109.46773 * 30.00369 * 3 2 1 6 6 H 1.48496 * 109.46890 * 150.00278 * 3 2 1 7 7 C 1.37881 * 120.00636 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99044 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00395 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.52686 * 60.07975 * 9 7 2 11 11 C 1.53045 * 109.49621 * 180.16247 * 9 7 2 12 12 C 1.53042 * 109.53646 * 181.31708 * 11 9 7 13 13 C 1.53621 * 109.24023 * 298.51037 * 12 11 9 14 14 N 1.46931 * 108.54684 * 54.85638 * 13 12 11 15 15 C 1.34776 * 120.62757 * 126.36392 * 14 13 12 16 16 O 1.21285 * 119.99370 * 179.72017 * 15 14 13 17 17 C 1.50703 * 120.00471 * 359.72789 * 15 14 13 18 18 N 1.46500 * 109.46963 * 179.97438 * 17 15 14 19 19 C 1.34943 * 126.03414 * 124.71387 * 18 17 15 20 20 C 1.35316 * 107.74531 * 180.25880 * 19 18 17 21 21 S 1.76202 * 126.04277 * 180.02562 * 20 19 18 22 22 N 1.65598 * 107.21637 * 270.00234 * 21 20 19 23 23 O 1.42109 * 106.40161 * 23.53947 * 21 20 19 24 24 O 1.42096 * 106.40561 * 156.46135 * 21 20 19 25 25 C 1.39873 * 107.91987 * 0.02562 * 20 19 18 26 26 N 1.30832 * 108.20166 * 0.02562 * 25 20 19 27 27 C 1.46921 * 118.73415 * 306.09413 * 14 13 12 28 28 H 0.96998 * 119.99769 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.45606 * 301.33406 * 11 9 7 30 30 H 1.08998 * 109.45970 * 61.30916 * 11 9 7 31 31 H 1.09000 * 109.49567 * 58.58642 * 12 11 9 32 32 H 1.08997 * 109.49716 * 178.64649 * 12 11 9 33 33 H 1.09004 * 109.73993 * 295.11599 * 13 12 11 34 34 H 1.09002 * 109.66572 * 174.55308 * 13 12 11 35 35 H 1.08997 * 109.46840 * 59.99216 * 17 15 14 36 36 H 1.08996 * 109.46683 * 299.99706 * 17 15 14 37 37 H 1.07996 * 126.13000 * 0.26422 * 19 18 17 38 38 H 0.96999 * 120.00314 * 149.99834 * 22 21 20 39 39 H 0.97005 * 119.99996 * 329.99620 * 22 21 20 40 40 H 1.07998 * 125.89584 * 180.02562 * 25 20 19 41 41 H 1.09006 * 109.58263 * 173.64413 * 27 14 13 42 42 H 1.09000 * 109.58799 * 294.06753 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8763 -0.6817 0.8892 11 6 4.0225 -2.6366 -0.0057 12 6 5.5525 -2.6379 0.0268 13 6 6.0862 -1.9323 -1.2291 14 7 5.4856 -0.5934 -1.3038 15 6 6.2621 0.5017 -1.4232 16 8 5.7540 1.6010 -1.4890 17 6 7.7616 0.3603 -1.4752 18 7 8.3728 1.6852 -1.6065 19 6 9.3058 2.2138 -0.7873 20 6 9.6033 3.4517 -1.2455 21 16 10.7658 4.5688 -0.5345 22 7 9.9470 5.4901 0.5714 23 8 11.6838 3.7754 0.2054 24 8 11.1636 5.4505 -1.5754 25 6 8.8251 3.6880 -2.3835 26 7 8.0864 2.6301 -2.6002 27 6 4.0224 -0.4717 -1.2518 28 1 -0.4850 0.8400 0.0004 29 1 3.6402 -3.1599 0.8706 30 1 3.6782 -3.1408 -0.9087 31 1 5.8979 -2.1120 0.9170 32 1 5.9151 -3.6655 0.0478 33 1 5.8147 -2.5046 -2.1163 34 1 7.1708 -1.8434 -1.1670 35 1 8.0391 -0.2540 -2.3317 36 1 8.1138 -0.1135 -0.5590 37 1 9.7377 1.7346 0.0788 38 1 10.4085 5.8359 1.3513 39 1 9.0058 5.6841 0.4392 40 1 8.8326 4.5882 -2.9801 41 1 3.7449 0.5814 -1.2046 42 1 3.5860 -0.9272 -2.1407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647299425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:10 Heat of formation + Delta-G solvation = -22.555633 kcal Electronic energy + Delta-G solvation = -28007.739492 eV Core-core repulsion = 23924.034008 eV Total energy + Delta-G solvation = -4083.705484 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.66894 -39.90014 -37.26642 -37.20754 -35.97162 -34.01981 -33.40407 -33.33848 -32.12131 -30.85061 -30.67470 -28.24630 -25.38403 -24.74049 -22.30505 -22.23215 -21.87449 -20.10532 -19.60202 -18.91614 -18.26947 -17.59150 -17.54953 -17.04842 -16.75633 -16.04560 -15.69948 -15.48780 -15.23494 -14.83694 -14.57086 -14.21068 -14.14917 -13.67592 -13.48087 -13.22275 -13.07059 -12.88531 -12.44740 -12.38976 -12.31066 -12.26328 -12.14700 -11.92467 -11.52416 -11.21980 -10.90306 -10.79398 -10.64700 -10.56688 -10.26799 -10.20795 -9.89936 -9.72263 -9.55592 -9.32424 -9.19565 -8.72047 -8.30299 -6.20883 -4.23067 0.30299 1.24144 1.93033 2.13283 2.57331 3.06144 3.11223 3.27958 3.36681 3.45023 3.54442 3.98999 4.19026 4.31046 4.32289 4.42952 4.62807 4.73175 4.85430 5.08982 5.10872 5.16356 5.25394 5.28004 5.59134 5.75401 5.79016 5.92694 5.98334 6.11514 6.21047 6.32131 6.38311 6.47835 6.57164 6.63834 6.79191 6.99962 7.20229 7.27731 7.54428 7.59509 8.19525 8.37856 8.82370 9.40130 10.91089 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.016641 B = 0.002985 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.152378 B = 9377.795437 C =10285.361977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.074 3.926 3 Si 0.881 3.119 4 H -0.273 1.273 5 H -0.295 1.295 6 H -0.267 1.267 7 C -0.519 4.519 8 H 0.079 0.921 9 C 0.006 3.994 10 H 0.030 0.970 11 C -0.102 4.102 12 C -0.136 4.136 13 C 0.105 3.895 14 N -0.604 5.604 15 C 0.493 3.507 16 O -0.516 6.516 17 C 0.103 3.897 18 N -0.342 5.342 19 C 0.183 3.817 20 C -0.818 4.818 21 S 2.740 3.260 22 N -1.251 6.251 23 O -0.974 6.974 24 O -0.966 6.966 25 C 0.122 3.878 26 N -0.254 5.254 27 C 0.103 3.897 28 H 0.266 0.734 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.121 0.879 36 H 0.130 0.870 37 H 0.194 0.806 38 H 0.418 0.582 39 H 0.418 0.582 40 H 0.199 0.801 41 H 0.080 0.920 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.734 2.053 0.153 21.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.129 4.129 3 Si 0.711 3.289 4 H -0.200 1.200 5 H -0.222 1.222 6 H -0.192 1.192 7 C -0.557 4.557 8 H 0.097 0.903 9 C -0.014 4.014 10 H 0.048 0.952 11 C -0.139 4.139 12 C -0.175 4.175 13 C -0.018 4.018 14 N -0.338 5.338 15 C 0.277 3.723 16 O -0.391 6.391 17 C -0.022 4.022 18 N -0.118 5.118 19 C 0.029 3.971 20 C -0.918 4.918 21 S 2.826 3.174 22 N -0.925 5.925 23 O -0.964 6.964 24 O -0.955 6.955 25 C -0.070 4.070 26 N -0.072 5.072 27 C -0.017 4.017 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.139 0.861 36 H 0.148 0.852 37 H 0.211 0.789 38 H 0.248 0.752 39 H 0.245 0.755 40 H 0.216 0.784 41 H 0.097 0.903 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 21.262 1.963 -1.011 21.376 hybrid contribution -0.042 1.070 0.696 1.277 sum 21.220 3.033 -0.315 21.438 Atomic orbital electron populations 1.69880 1.06255 1.27254 1.49632 1.25049 0.94760 0.99061 0.94049 0.86972 0.79467 0.83550 0.78900 1.19986 1.22190 1.19176 1.20939 0.88105 0.94679 1.51938 0.90342 1.19484 0.96962 0.92164 0.92752 0.95214 1.21452 0.91854 0.98831 1.01795 1.22068 0.98797 0.99663 0.96937 1.21884 0.96674 0.83562 0.99646 1.48452 1.08646 1.05395 1.71262 1.20254 0.88049 0.85373 0.78595 1.90795 1.74294 1.25321 1.48669 1.21872 0.93516 0.80560 1.06206 1.48742 1.28771 1.13586 1.20667 1.22501 0.88325 0.92127 0.94180 1.31251 1.31227 1.13811 1.15489 1.00292 0.71713 0.72778 0.72597 1.53181 1.24845 1.71923 1.42519 1.93568 1.60498 1.70304 1.72009 1.93590 1.79822 1.64663 1.57414 1.23629 0.91094 0.98091 0.94139 1.77664 1.20765 0.98946 1.09792 1.22704 0.74864 1.02708 1.01407 0.92383 0.92001 0.92344 0.91913 0.91326 0.90821 0.91023 0.86081 0.85237 0.78915 0.75203 0.75458 0.78446 0.90256 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.80 13.96 55.43 0.77 -26.03 16 2 C 0.07 2.09 5.45 -17.82 -0.10 2.00 16 3 Si 0.88 22.76 24.32 -169.99 -4.13 18.63 16 4 H -0.27 -7.22 6.92 56.52 0.39 -6.83 16 5 H -0.29 -7.60 7.11 56.52 0.40 -7.19 16 6 H -0.27 -6.83 6.53 56.52 0.37 -6.46 16 7 C -0.52 -13.83 9.14 -34.44 -0.31 -14.15 16 8 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 9 C 0.01 0.13 1.84 -91.65 -0.17 -0.04 16 10 H 0.03 0.69 7.21 -51.93 -0.37 0.32 16 11 C -0.10 -1.72 5.10 -26.69 -0.14 -1.86 16 12 C -0.14 -1.66 6.10 -26.39 -0.16 -1.82 16 13 C 0.11 1.17 6.37 -3.48 -0.02 1.15 16 14 N -0.60 -9.81 2.97 -172.50 -0.51 -10.32 16 15 C 0.49 8.10 7.73 -10.98 -0.08 8.02 16 16 O -0.52 -11.14 15.12 5.55 0.08 -11.06 16 17 C 0.10 1.09 5.34 -5.19 -0.03 1.06 16 18 N -0.34 -4.29 3.40 -62.55 -0.21 -4.51 16 19 C 0.18 1.84 11.19 -17.23 -0.19 1.65 16 20 C -0.82 -8.51 6.17 -40.01 -0.25 -8.75 16 21 S 2.74 24.80 6.42 -107.50 -0.69 24.11 16 22 N -1.25 -7.45 9.52 60.35 0.57 -6.88 16 23 O -0.97 -11.11 17.85 -57.17 -1.02 -12.13 16 24 O -0.97 -11.77 17.87 -57.17 -1.02 -12.80 16 25 C 0.12 1.47 11.82 -17.37 -0.21 1.27 16 26 N -0.25 -3.82 11.64 30.62 0.36 -3.46 16 27 C 0.10 2.17 5.11 -3.71 -0.02 2.15 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.07 0.50 5.93 -51.93 -0.31 0.19 16 35 H 0.12 0.96 7.93 -51.93 -0.41 0.55 16 36 H 0.13 0.82 7.63 -51.93 -0.40 0.43 16 37 H 0.19 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.42 1.75 8.96 -34.47 -0.31 1.44 16 39 H 0.42 2.02 8.96 -34.47 -0.31 1.71 16 40 H 0.20 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.08 1.92 2.32 -51.93 -0.12 1.80 16 42 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 355.18 15.07 5.35 5.35 Total: -1.00 -40.78 355.18 -7.33 -48.12 By element: Atomic # 1 Polarization: 5.50 SS G_CDS: -5.21 Total: 0.30 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: -1.68 Total: -9.32 kcal Atomic # 7 Polarization: -52.17 SS G_CDS: 0.98 Total: -51.19 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -1.96 Total: -35.98 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.13 Total: 18.63 kcal Atomic # 16 Polarization: 24.80 SS G_CDS: -0.69 Total: 24.11 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -40.78 -7.33 -48.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647299425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.561 kcal (2) G-P(sol) polarization free energy of solvation -40.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds