Wall clock time and date at job start Wed Apr 1 2020 00:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99943 * 2 1 4 4 H 1.48495 * 109.47293 * 270.00431 * 3 2 1 5 5 H 1.48500 * 109.46773 * 30.00369 * 3 2 1 6 6 H 1.48496 * 109.46890 * 150.00278 * 3 2 1 7 7 C 1.37881 * 120.00636 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99044 * 359.97438 * 7 2 1 9 9 C 1.50693 * 120.00395 * 179.97438 * 7 2 1 10 10 H 1.09000 * 109.52686 * 60.07975 * 9 7 2 11 11 C 1.53045 * 109.49621 * 180.16247 * 9 7 2 12 12 C 1.53042 * 109.53646 * 181.31708 * 11 9 7 13 13 C 1.53621 * 109.24023 * 298.51037 * 12 11 9 14 14 N 1.46931 * 108.54684 * 54.85638 * 13 12 11 15 15 C 1.34776 * 120.62757 * 126.36392 * 14 13 12 16 16 O 1.21285 * 119.99370 * 179.72017 * 15 14 13 17 17 C 1.50703 * 120.00471 * 359.72789 * 15 14 13 18 18 N 1.46500 * 109.46963 * 179.97438 * 17 15 14 19 19 C 1.34943 * 126.03414 * 124.71387 * 18 17 15 20 20 C 1.35316 * 107.74531 * 180.25880 * 19 18 17 21 21 S 1.76202 * 126.04277 * 180.02562 * 20 19 18 22 22 N 1.65598 * 107.21637 * 270.00234 * 21 20 19 23 23 O 1.42109 * 106.40161 * 23.53947 * 21 20 19 24 24 O 1.42096 * 106.40561 * 156.46135 * 21 20 19 25 25 C 1.39873 * 107.91987 * 0.02562 * 20 19 18 26 26 N 1.30832 * 108.20166 * 0.02562 * 25 20 19 27 27 C 1.46921 * 118.73415 * 306.09413 * 14 13 12 28 28 H 0.96998 * 119.99769 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.45606 * 301.33406 * 11 9 7 30 30 H 1.08998 * 109.45970 * 61.30916 * 11 9 7 31 31 H 1.09000 * 109.49567 * 58.58642 * 12 11 9 32 32 H 1.08997 * 109.49716 * 178.64649 * 12 11 9 33 33 H 1.09004 * 109.73993 * 295.11599 * 13 12 11 34 34 H 1.09002 * 109.66572 * 174.55308 * 13 12 11 35 35 H 1.08997 * 109.46840 * 59.99216 * 17 15 14 36 36 H 1.08996 * 109.46683 * 299.99706 * 17 15 14 37 37 H 1.07996 * 126.13000 * 0.26422 * 19 18 17 38 38 H 0.96999 * 120.00314 * 149.99834 * 22 21 20 39 39 H 0.97005 * 119.99996 * 329.99620 * 22 21 20 40 40 H 1.07998 * 125.89584 * 180.02562 * 25 20 19 41 41 H 1.09006 * 109.58263 * 173.64413 * 27 14 13 42 42 H 1.09000 * 109.58799 * 294.06753 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 1 3.8763 -0.6817 0.8892 11 6 4.0225 -2.6366 -0.0057 12 6 5.5525 -2.6379 0.0268 13 6 6.0862 -1.9323 -1.2291 14 7 5.4856 -0.5934 -1.3038 15 6 6.2621 0.5017 -1.4232 16 8 5.7540 1.6010 -1.4890 17 6 7.7616 0.3603 -1.4752 18 7 8.3728 1.6852 -1.6065 19 6 9.3058 2.2138 -0.7873 20 6 9.6033 3.4517 -1.2455 21 16 10.7658 4.5688 -0.5345 22 7 9.9470 5.4901 0.5714 23 8 11.6838 3.7754 0.2054 24 8 11.1636 5.4505 -1.5754 25 6 8.8251 3.6880 -2.3835 26 7 8.0864 2.6301 -2.6002 27 6 4.0224 -0.4717 -1.2518 28 1 -0.4850 0.8400 0.0004 29 1 3.6402 -3.1599 0.8706 30 1 3.6782 -3.1408 -0.9087 31 1 5.8979 -2.1120 0.9170 32 1 5.9151 -3.6655 0.0478 33 1 5.8147 -2.5046 -2.1163 34 1 7.1708 -1.8434 -1.1670 35 1 8.0391 -0.2540 -2.3317 36 1 8.1138 -0.1135 -0.5590 37 1 9.7377 1.7346 0.0788 38 1 10.4085 5.8359 1.3513 39 1 9.0058 5.6841 0.4392 40 1 8.8326 4.5882 -2.9801 41 1 3.7449 0.5814 -1.2046 42 1 3.5860 -0.9272 -2.1407 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647299425.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:09 Heat of formation + Delta-G solvation = -59.003825 kcal Electronic energy + Delta-G solvation = -28009.320004 eV Core-core repulsion = 23924.034008 eV Total energy + Delta-G solvation = -4085.285996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.51322 -41.13019 -38.56785 -38.08623 -36.80036 -35.48241 -34.61635 -33.93703 -33.63051 -32.26691 -31.58931 -29.25821 -26.99876 -26.10528 -23.58766 -23.08731 -22.85497 -21.41357 -20.43624 -20.00048 -19.14456 -18.92616 -18.62368 -18.24321 -17.74741 -17.04925 -16.85791 -16.45348 -16.29911 -15.95742 -15.84734 -15.45506 -15.30549 -15.07426 -14.83588 -14.53462 -14.21418 -14.01416 -13.74282 -13.47326 -13.23894 -13.16017 -13.10949 -12.99861 -12.96409 -12.76642 -12.38291 -12.15840 -11.83939 -11.70540 -11.62702 -11.40980 -11.24575 -11.12187 -11.05942 -10.86574 -10.62530 -10.32055 -9.66248 -8.44334 -6.45886 -0.41266 0.47933 1.15569 1.16363 1.24390 1.28955 1.32193 1.42714 1.93945 2.14551 2.43820 2.85751 2.93032 3.17284 3.31925 3.64741 3.78949 3.91465 3.99795 4.01872 4.10556 4.14104 4.38956 4.42762 4.49428 4.49919 4.58867 4.73916 4.84324 4.95418 5.10172 5.23533 5.28674 5.33009 5.35670 5.51504 5.58796 5.64106 5.68733 6.22059 6.36074 6.36827 6.39301 6.64213 7.02349 7.19690 8.71959 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.016641 B = 0.002985 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.152378 B = 9377.795437 C =10285.361977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.027 3.973 3 Si 0.943 3.057 4 H -0.290 1.290 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.512 4.512 8 H 0.050 0.950 9 C 0.006 3.994 10 H 0.017 0.983 11 C -0.101 4.101 12 C -0.127 4.127 13 C 0.098 3.902 14 N -0.605 5.605 15 C 0.483 3.517 16 O -0.579 6.579 17 C 0.109 3.891 18 N -0.354 5.354 19 C 0.189 3.811 20 C -0.824 4.824 21 S 2.772 3.228 22 N -1.239 6.239 23 O -0.993 6.993 24 O -0.999 6.999 25 C 0.114 3.886 26 N -0.310 5.310 27 C 0.110 3.890 28 H 0.267 0.733 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.129 0.871 35 H 0.155 0.845 36 H 0.184 0.816 37 H 0.237 0.763 38 H 0.429 0.571 39 H 0.425 0.575 40 H 0.211 0.789 41 H 0.044 0.956 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.684 0.602 1.029 25.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.171 4.171 3 Si 0.773 3.227 4 H -0.218 1.218 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.550 4.550 8 H 0.069 0.931 9 C -0.013 4.013 10 H 0.035 0.965 11 C -0.139 4.139 12 C -0.165 4.165 13 C -0.023 4.023 14 N -0.338 5.338 15 C 0.271 3.729 16 O -0.458 6.458 17 C -0.015 4.015 18 N -0.131 5.131 19 C 0.036 3.964 20 C -0.923 4.923 21 S 2.857 3.143 22 N -0.917 5.917 23 O -0.983 6.983 24 O -0.988 6.988 25 C -0.076 4.076 26 N -0.128 5.128 27 C -0.013 4.013 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.128 0.872 33 H 0.104 0.896 34 H 0.147 0.853 35 H 0.172 0.828 36 H 0.201 0.799 37 H 0.253 0.747 38 H 0.261 0.739 39 H 0.254 0.746 40 H 0.227 0.773 41 H 0.062 0.938 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 25.256 0.472 -0.121 25.261 hybrid contribution -1.288 1.459 0.436 1.994 sum 23.969 1.931 0.315 24.048 Atomic orbital electron populations 1.69984 1.07554 1.27845 1.52427 1.25639 0.95162 1.01644 0.94672 0.86003 0.78246 0.80764 0.77678 1.21768 1.22312 1.19010 1.21377 0.91225 0.93091 1.49335 0.93133 1.19412 0.93582 0.95765 0.92586 0.96514 1.21406 0.96137 0.94874 1.01482 1.22031 0.94305 1.02482 0.97697 1.22351 0.99671 0.80631 0.99642 1.48447 1.06478 1.07905 1.70981 1.21342 0.90669 0.84139 0.76757 1.90770 1.76009 1.27766 1.51229 1.22183 0.88385 0.80577 1.10312 1.48872 1.29511 1.13997 1.20673 1.23241 0.87087 0.91774 0.94310 1.31373 1.31142 1.14574 1.15191 0.99223 0.71031 0.72102 0.71920 1.52870 1.25208 1.71274 1.42347 1.93537 1.61545 1.70908 1.72300 1.93554 1.80673 1.65553 1.59028 1.23985 0.90734 0.98084 0.94820 1.77585 1.22594 1.00499 1.12078 1.22073 0.78949 0.99996 1.00253 0.92383 0.92688 0.92489 0.91534 0.87190 0.89555 0.85265 0.82804 0.79882 0.74713 0.73911 0.74558 0.77279 0.93785 0.92110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.56 13.96 21.45 0.30 -58.26 16 2 C 0.03 1.61 5.45 84.66 0.46 2.07 16 3 Si 0.94 49.65 24.32 68.60 1.67 51.32 16 4 H -0.29 -15.88 6.92 99.48 0.69 -15.19 16 5 H -0.30 -15.32 7.11 99.48 0.71 -14.62 16 6 H -0.27 -13.65 6.53 99.48 0.65 -13.00 16 7 C -0.51 -28.17 9.14 25.60 0.23 -27.94 16 8 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 9 C 0.01 0.27 1.84 -11.46 -0.02 0.25 16 10 H 0.02 0.77 7.21 -2.39 -0.02 0.76 16 11 C -0.10 -3.24 5.10 30.62 0.16 -3.08 16 12 C -0.13 -2.46 6.10 30.82 0.19 -2.27 16 13 C 0.10 1.64 6.37 86.51 0.55 2.19 16 14 N -0.61 -18.04 2.97 -818.04 -2.43 -20.47 16 15 C 0.48 14.69 7.73 87.66 0.68 15.36 16 16 O -0.58 -24.91 15.12 -3.04 -0.05 -24.95 16 17 C 0.11 1.75 5.34 85.63 0.46 2.21 16 18 N -0.35 -7.76 3.40 -351.81 -1.20 -8.95 16 19 C 0.19 3.10 11.19 83.54 0.93 4.04 16 20 C -0.82 -15.34 6.17 21.99 0.14 -15.21 16 21 S 2.77 44.78 6.42 -56.49 -0.36 44.42 16 22 N -1.24 -12.14 9.52 37.02 0.35 -11.79 16 23 O -0.99 -20.09 17.85 -128.00 -2.28 -22.38 16 24 O -1.00 -23.27 17.87 -128.00 -2.29 -25.56 16 25 C 0.11 2.68 11.82 85.24 1.01 3.68 16 26 N -0.31 -8.98 11.64 -57.02 -0.66 -9.65 16 27 C 0.11 4.60 5.11 86.36 0.44 5.04 16 28 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 29 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 30 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.13 0.76 5.93 -2.39 -0.01 0.75 16 35 H 0.15 1.50 7.93 -2.39 -0.02 1.48 16 36 H 0.18 0.92 7.63 -2.39 -0.02 0.90 16 37 H 0.24 1.54 8.06 -2.91 -0.02 1.51 16 38 H 0.43 2.59 8.96 -96.75 -0.87 1.73 16 39 H 0.43 3.29 8.96 -96.74 -0.87 2.43 16 40 H 0.21 3.92 8.06 -2.91 -0.02 3.89 16 41 H 0.04 2.18 2.32 -2.38 -0.01 2.17 16 42 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -96.63 355.18 -2.45 -99.08 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -0.72 Total: 0.84 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: 5.22 Total: -13.65 kcal Atomic # 7 Polarization: -105.48 SS G_CDS: -3.63 Total: -109.11 kcal Atomic # 8 Polarization: -68.27 SS G_CDS: -4.62 Total: -72.89 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 1.67 Total: 51.32 kcal Atomic # 16 Polarization: 44.78 SS G_CDS: -0.36 Total: 44.42 kcal Total: -96.63 -2.45 -99.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647299425.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.073 kcal (2) G-P(sol) polarization free energy of solvation -96.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds