Wall clock time and date at job start Wed Apr 1 2020 01:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35243 * 126.07271 * 2 1 4 4 C 1.40406 * 107.86468 * 179.84952 * 3 2 1 5 5 N 1.40185 * 125.97102 * 180.15049 * 4 3 2 6 6 C 1.34784 * 119.99734 * 0.29444 * 5 4 3 7 7 O 1.21584 * 120.00044 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99327 * 180.02562 * 6 5 4 9 9 C 1.39443 * 119.99426 * 175.52106 * 8 6 5 10 10 C 1.36492 * 120.68897 * 34.70593 * 9 8 6 11 11 C 1.39712 * 121.75605 * 179.76828 * 10 9 8 12 12 C 1.35558 * 122.70849 * 0.52917 * 11 10 9 13 13 C 1.40689 * 120.08512 * 359.74531 * 12 11 10 14 14 N 1.31062 * 138.75953 * 179.97438 * 13 12 11 15 15 O 1.21490 * 109.07186 * 180.02562 * 14 13 12 16 16 N 1.21511 * 116.26952 * 359.97438 * 15 14 13 17 17 C 1.30653 * 109.09990 * 0.02562 * 16 15 14 18 18 N 1.31208 * 108.05849 * 0.42121 * 4 3 2 19 19 N 1.34972 * 126.06885 * 180.31717 * 2 1 3 20 20 C 1.46505 * 125.97208 * 359.97438 * 19 2 1 21 21 C 1.50699 * 109.46885 * 90.00298 * 20 19 2 22 22 H 1.08004 * 120.00485 * 359.97438 * 21 20 19 23 23 C 1.37881 * 120.00066 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99383 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00207 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47335 * 89.99906 * 25 23 21 27 27 H 1.48501 * 109.46987 * 209.99962 * 25 23 21 28 28 H 1.48496 * 109.47201 * 329.99881 * 25 23 21 29 29 H 1.08998 * 109.47164 * 269.69017 * 1 2 3 30 30 H 1.09002 * 109.47539 * 149.68316 * 1 2 3 31 31 H 1.09005 * 109.46848 * 29.68354 * 1 2 3 32 32 H 1.08000 * 126.06646 * 359.97379 * 3 2 1 33 33 H 0.96999 * 120.00071 * 180.30070 * 5 4 3 34 34 H 0.97000 * 120.00458 * 355.51487 * 8 6 5 35 35 H 1.07996 * 119.12392 * 0.02562 * 10 9 8 36 36 H 1.07998 * 118.64255 * 180.29904 * 11 10 9 37 37 H 1.07996 * 119.96051 * 179.72535 * 12 11 10 38 38 H 1.09001 * 109.46634 * 209.99743 * 20 19 2 39 39 H 1.09000 * 109.47367 * 330.00415 * 20 19 2 40 40 H 0.97005 * 119.99216 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6544 0.0035 5 7 4.7737 1.4749 0.0076 6 6 4.6369 2.8157 0.0145 7 8 3.5277 3.3136 0.0176 8 7 5.7298 3.6044 0.0179 9 6 5.5905 4.9891 -0.0693 10 6 4.5315 5.6209 0.5159 11 6 4.3725 7.0072 0.4466 12 6 5.2439 7.8126 -0.2089 13 6 6.3674 7.2610 -0.8515 14 7 7.3963 7.6641 -1.5562 15 8 8.0704 6.7005 -1.8615 16 7 7.6729 5.6207 -1.4710 17 6 6.5695 5.7912 -0.7923 18 7 3.6336 -0.6576 -0.0036 19 7 2.3016 -1.0910 -0.0060 20 6 1.8499 -2.4846 -0.0132 21 6 1.6946 -2.9549 -1.4365 22 1 1.9103 -2.2829 -2.2540 23 6 1.2770 -4.2433 -1.6952 24 7 1.0148 -5.0618 -0.6997 25 14 1.0852 -4.8265 -3.4593 26 1 2.3664 -5.4123 -3.9292 27 1 0.0163 -5.8551 -3.5271 28 1 0.7204 -3.6759 -4.3242 29 1 -0.3633 -0.0056 1.0276 30 1 -0.3634 -0.8871 -0.5187 31 1 -0.3633 0.8929 -0.5089 32 1 1.9720 2.1211 -0.0004 33 1 5.6586 1.0776 0.0055 34 1 6.6133 3.2089 0.0812 35 1 3.7992 5.0340 1.0504 36 1 3.5182 7.4553 0.9321 37 1 5.0754 8.8789 -0.2381 38 1 2.5847 -3.1073 0.4970 39 1 0.8914 -2.5586 0.5005 40 1 0.7207 -5.9681 -0.8817 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661086515.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:56 Heat of formation + Delta-G solvation = 202.984904 kcal Electronic energy + Delta-G solvation = -27992.808556 eV Core-core repulsion = 23815.732043 eV Total energy + Delta-G solvation = -4177.076513 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.123 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.95709 -41.24415 -40.28344 -38.60911 -35.77166 -35.06981 -34.63059 -33.54630 -33.37905 -31.60240 -30.95289 -29.87567 -26.80410 -26.43130 -25.96544 -25.19224 -23.54509 -22.46844 -21.06467 -20.40670 -19.99165 -19.25794 -19.14897 -18.62091 -17.75921 -17.06049 -16.74013 -16.20703 -15.90066 -15.69302 -15.18371 -14.94097 -14.60343 -14.37615 -14.08924 -13.39157 -13.32692 -13.10481 -12.92231 -12.52663 -12.43227 -12.36408 -12.21005 -12.14290 -12.00778 -11.73151 -11.47713 -11.17405 -10.88271 -10.79677 -10.54401 -10.35978 -10.24363 -10.07352 -9.81532 -9.61719 -8.68540 -8.39923 -8.03569 -7.54481 -6.29954 -4.37774 -0.32846 0.80452 1.46804 1.88676 2.39566 2.66895 2.81935 3.01704 3.05009 3.18986 3.23340 3.25557 3.30998 3.53700 3.64448 4.02468 4.17671 4.27308 4.50970 4.60841 4.83660 5.02969 5.04144 5.29435 5.34676 5.56567 5.63015 5.74304 5.85349 5.91795 6.02014 6.04492 6.25380 6.35442 6.40403 6.49815 6.82093 6.90234 7.00125 7.32099 7.61780 7.63377 7.83772 7.97277 8.09708 8.17801 8.55054 8.69781 9.28931 10.77333 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.020989 B = 0.002106 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.703425 B =13294.503025 C =13922.634050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.094 3.906 3 C -0.288 4.288 4 C 0.276 3.724 5 N -0.633 5.633 6 C 0.715 3.285 7 O -0.543 6.543 8 N -0.675 5.675 9 C 0.224 3.776 10 C -0.110 4.110 11 C -0.047 4.047 12 C -0.104 4.104 13 C 0.045 3.955 14 N -0.350 5.350 15 O 0.368 5.632 16 N -0.337 5.337 17 C 0.002 3.998 18 N -0.318 5.318 19 N -0.315 5.315 20 C 0.258 3.742 21 C -0.538 4.538 22 H 0.064 0.936 23 C 0.066 3.934 24 N -0.891 5.891 25 Si 0.906 3.094 26 H -0.277 1.277 27 H -0.283 1.283 28 H -0.272 1.272 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.161 0.839 33 H 0.410 0.590 34 H 0.414 0.586 35 H 0.167 0.833 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.568 23.109 4.404 24.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.038 4.038 3 C -0.319 4.319 4 C 0.023 3.977 5 N -0.282 5.282 6 C 0.415 3.585 7 O -0.417 6.417 8 N -0.322 5.322 9 C 0.124 3.876 10 C -0.136 4.136 11 C -0.070 4.070 12 C -0.125 4.125 13 C -0.109 4.109 14 N -0.073 5.073 15 O 0.134 5.866 16 N -0.058 5.058 17 C -0.154 4.154 18 N -0.148 5.148 19 N -0.097 5.097 20 C 0.141 3.859 21 C -0.576 4.576 22 H 0.083 0.917 23 C -0.138 4.138 24 N -0.529 5.529 25 Si 0.733 3.267 26 H -0.203 1.203 27 H -0.208 1.208 28 H -0.196 1.196 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.179 0.821 33 H 0.245 0.755 34 H 0.250 0.750 35 H 0.184 0.816 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.173 22.158 3.785 23.919 hybrid contribution -0.173 -0.366 -0.578 0.706 sum 8.000 21.792 3.207 23.434 Atomic orbital electron populations 1.20387 0.87805 1.03962 1.02599 1.21077 0.94992 0.87043 1.00670 1.21212 0.89496 0.99900 1.21294 1.18595 0.86182 0.89321 1.03602 1.41245 1.08259 1.03151 1.75567 1.15458 0.84030 0.80778 0.78208 1.90883 1.22945 1.72941 1.54936 1.42297 1.09787 1.03797 1.76333 1.16758 0.93810 0.80944 0.96098 1.21220 0.98292 0.94701 0.99355 1.20810 0.98086 0.92484 0.95584 1.19800 0.91794 1.01155 0.99766 1.22746 0.97306 0.90673 1.00133 1.75266 1.05597 1.11150 1.15336 1.85398 1.41393 1.06714 1.53132 1.75083 1.11996 1.06067 1.12622 1.23823 0.95394 0.94645 1.01570 1.77267 1.00148 1.08129 1.29286 1.49028 1.00763 1.07894 1.52055 1.19717 0.96025 0.71208 0.98987 1.21318 1.46962 0.98006 0.91323 0.91736 1.24929 0.94626 0.96035 0.98170 1.69921 1.44820 1.06970 1.31161 0.86353 0.78048 0.78591 0.83698 1.20329 1.20839 1.19638 0.90998 0.89854 0.90551 0.82132 0.75453 0.74970 0.81604 0.83472 0.83693 0.92955 0.92674 0.92213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.45 9.89 36.00 0.36 -1.09 16 2 C 0.09 1.88 6.92 -82.28 -0.57 1.31 16 3 C -0.29 -5.54 9.52 -39.83 -0.38 -5.92 16 4 C 0.28 5.28 8.11 -154.37 -1.25 4.03 16 5 N -0.63 -9.01 5.46 -15.51 -0.08 -9.10 16 6 C 0.72 9.45 8.37 -86.91 -0.73 8.73 16 7 O -0.54 -8.42 10.91 5.29 0.06 -8.36 16 8 N -0.68 -6.70 5.37 -13.11 -0.07 -6.77 16 9 C 0.22 2.27 6.48 -82.02 -0.53 1.74 16 10 C -0.11 -1.00 8.63 -39.66 -0.34 -1.34 16 11 C -0.05 -0.31 9.84 -39.99 -0.39 -0.70 16 12 C -0.10 -0.74 10.03 -39.61 -0.40 -1.14 16 13 C 0.05 0.44 7.77 -83.04 -0.64 -0.20 16 14 N -0.35 -3.63 12.29 31.89 0.39 -3.23 16 15 O 0.37 3.76 11.67 26.92 0.31 4.08 16 16 N -0.34 -3.63 12.27 32.74 0.40 -3.23 16 17 C 0.00 0.02 7.92 -81.14 -0.64 -0.62 16 18 N -0.32 -7.02 12.59 31.44 0.40 -6.63 16 19 N -0.31 -7.20 3.59 -58.32 -0.21 -7.41 16 20 C 0.26 6.44 5.81 -5.19 -0.03 6.41 16 21 C -0.54 -14.51 9.39 -34.44 -0.32 -14.83 16 22 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 23 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 24 N -0.89 -24.62 13.29 55.43 0.74 -23.89 16 25 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 30 H 0.08 1.46 7.71 -51.93 -0.40 1.06 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.16 2.95 5.91 -52.49 -0.31 2.64 16 33 H 0.41 4.59 8.84 -40.82 -0.36 4.23 16 34 H 0.41 3.05 8.84 -40.82 -0.36 2.69 16 35 H 0.17 1.63 6.13 -52.49 -0.32 1.31 16 36 H 0.15 0.52 8.06 -52.49 -0.42 0.09 16 37 H 0.15 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.05 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.06 1.36 7.65 -51.93 -0.40 0.96 16 40 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 354.17 15.07 5.34 5.34 Total: -1.00 -32.07 354.17 -7.53 -39.60 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -3.81 Total: 5.74 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -5.97 Total: -1.97 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: 1.56 Total: -60.25 kcal Atomic # 8 Polarization: -4.65 SS G_CDS: 0.37 Total: -4.28 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.07 -7.53 -39.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661086515.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 242.587 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 210.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 202.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds