Wall clock time and date at job start Wed Apr 1 2020 01:07:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35243 * 126.07271 * 2 1 4 4 C 1.40406 * 107.86468 * 179.84952 * 3 2 1 5 5 N 1.40185 * 125.97102 * 180.15049 * 4 3 2 6 6 C 1.34784 * 119.99734 * 0.29444 * 5 4 3 7 7 O 1.21584 * 120.00044 * 0.02562 * 6 5 4 8 8 N 1.34776 * 119.99327 * 180.02562 * 6 5 4 9 9 C 1.39443 * 119.99426 * 175.52106 * 8 6 5 10 10 C 1.36492 * 120.68897 * 34.70593 * 9 8 6 11 11 C 1.39712 * 121.75605 * 179.76828 * 10 9 8 12 12 C 1.35558 * 122.70849 * 0.52917 * 11 10 9 13 13 C 1.40689 * 120.08512 * 359.74531 * 12 11 10 14 14 N 1.31062 * 138.75953 * 179.97438 * 13 12 11 15 15 O 1.21490 * 109.07186 * 180.02562 * 14 13 12 16 16 N 1.21511 * 116.26952 * 359.97438 * 15 14 13 17 17 C 1.30653 * 109.09990 * 0.02562 * 16 15 14 18 18 N 1.31208 * 108.05849 * 0.42121 * 4 3 2 19 19 N 1.34972 * 126.06885 * 180.31717 * 2 1 3 20 20 C 1.46505 * 125.97208 * 359.97438 * 19 2 1 21 21 C 1.50699 * 109.46885 * 90.00298 * 20 19 2 22 22 H 1.08004 * 120.00485 * 359.97438 * 21 20 19 23 23 C 1.37881 * 120.00066 * 179.97438 * 21 20 19 24 24 N 1.31516 * 119.99383 * 359.97438 * 23 21 20 25 25 Si 1.86795 * 120.00207 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47335 * 89.99906 * 25 23 21 27 27 H 1.48501 * 109.46987 * 209.99962 * 25 23 21 28 28 H 1.48496 * 109.47201 * 329.99881 * 25 23 21 29 29 H 1.08998 * 109.47164 * 269.69017 * 1 2 3 30 30 H 1.09002 * 109.47539 * 149.68316 * 1 2 3 31 31 H 1.09005 * 109.46848 * 29.68354 * 1 2 3 32 32 H 1.08000 * 126.06646 * 359.97379 * 3 2 1 33 33 H 0.96999 * 120.00071 * 180.30070 * 5 4 3 34 34 H 0.97000 * 120.00458 * 355.51487 * 8 6 5 35 35 H 1.07996 * 119.12392 * 0.02562 * 10 9 8 36 36 H 1.07998 * 118.64255 * 180.29904 * 11 10 9 37 37 H 1.07996 * 119.96051 * 179.72535 * 12 11 10 38 38 H 1.09001 * 109.46634 * 209.99743 * 20 19 2 39 39 H 1.09000 * 109.47367 * 330.00415 * 20 19 2 40 40 H 0.97005 * 119.99216 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6370 0.6544 0.0035 5 7 4.7737 1.4749 0.0076 6 6 4.6369 2.8157 0.0145 7 8 3.5277 3.3136 0.0176 8 7 5.7298 3.6044 0.0179 9 6 5.5905 4.9891 -0.0693 10 6 4.5315 5.6209 0.5159 11 6 4.3725 7.0072 0.4466 12 6 5.2439 7.8126 -0.2089 13 6 6.3674 7.2610 -0.8515 14 7 7.3963 7.6641 -1.5562 15 8 8.0704 6.7005 -1.8615 16 7 7.6729 5.6207 -1.4710 17 6 6.5695 5.7912 -0.7923 18 7 3.6336 -0.6576 -0.0036 19 7 2.3016 -1.0910 -0.0060 20 6 1.8499 -2.4846 -0.0132 21 6 1.6946 -2.9549 -1.4365 22 1 1.9103 -2.2829 -2.2540 23 6 1.2770 -4.2433 -1.6952 24 7 1.0148 -5.0618 -0.6997 25 14 1.0852 -4.8265 -3.4593 26 1 2.3664 -5.4123 -3.9292 27 1 0.0163 -5.8551 -3.5271 28 1 0.7204 -3.6759 -4.3242 29 1 -0.3633 -0.0056 1.0276 30 1 -0.3634 -0.8871 -0.5187 31 1 -0.3633 0.8929 -0.5089 32 1 1.9720 2.1211 -0.0004 33 1 5.6586 1.0776 0.0055 34 1 6.6133 3.2089 0.0812 35 1 3.7992 5.0340 1.0504 36 1 3.5182 7.4553 0.9321 37 1 5.0754 8.8789 -0.2381 38 1 2.5847 -3.1073 0.4970 39 1 0.8914 -2.5586 0.5005 40 1 0.7207 -5.9681 -0.8817 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661086515.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:07:55 Heat of formation + Delta-G solvation = 182.428746 kcal Electronic energy + Delta-G solvation = -27993.699938 eV Core-core repulsion = 23815.732043 eV Total energy + Delta-G solvation = -4177.967895 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.123 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -47.70818 -42.49622 -41.56352 -39.42934 -36.73142 -36.27714 -35.51013 -35.28870 -34.19162 -33.07658 -32.61843 -30.73499 -28.56964 -27.86845 -26.78005 -25.91648 -25.15553 -23.79791 -21.88902 -21.65393 -21.28405 -20.17601 -20.00937 -19.56522 -18.82337 -18.68225 -18.02746 -17.46378 -17.00557 -16.85652 -16.42371 -16.14277 -15.96420 -15.77055 -15.29254 -14.70856 -14.36755 -14.10793 -14.04640 -13.80050 -13.64128 -13.61469 -13.50552 -13.17381 -13.03070 -12.94487 -12.80373 -12.69698 -12.64557 -12.26593 -12.15586 -11.63913 -11.57266 -11.39875 -11.20575 -10.79660 -10.73990 -9.62275 -9.25099 -8.99384 -8.33186 -6.50545 -1.03694 0.09709 0.65860 0.83945 1.01699 1.37347 1.38559 1.49345 1.55243 1.87950 1.94582 2.18824 2.31345 2.35535 2.39707 2.64591 2.95296 2.96877 3.46500 3.77905 3.86015 4.04395 4.13559 4.19100 4.37514 4.45320 4.67190 4.70850 4.80447 4.87369 4.93469 4.98124 5.03052 5.11467 5.17618 5.23727 5.32751 5.53474 5.59519 5.64658 5.81126 5.90573 6.26230 6.46656 6.62331 7.02072 7.10338 7.20457 7.34293 8.72597 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.020989 B = 0.002106 C = 0.002011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.703425 B =13294.503025 C =13922.634050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.088 3.912 3 C -0.292 4.292 4 C 0.289 3.711 5 N -0.628 5.628 6 C 0.719 3.281 7 O -0.565 6.565 8 N -0.660 5.660 9 C 0.196 3.804 10 C -0.100 4.100 11 C -0.040 4.040 12 C -0.097 4.097 13 C 0.038 3.962 14 N -0.359 5.359 15 O 0.365 5.635 16 N -0.350 5.350 17 C -0.006 4.006 18 N -0.358 5.358 19 N -0.342 5.342 20 C 0.276 3.724 21 C -0.553 4.553 22 H 0.049 0.951 23 C 0.023 3.977 24 N -0.917 5.917 25 Si 0.969 3.031 26 H -0.276 1.276 27 H -0.270 1.270 28 H -0.270 1.270 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.174 0.826 33 H 0.423 0.577 34 H 0.425 0.575 35 H 0.161 0.839 36 H 0.185 0.815 37 H 0.175 0.825 38 H 0.024 0.976 39 H 0.054 0.946 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.873 25.307 4.186 26.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.042 4.042 3 C -0.323 4.323 4 C 0.034 3.966 5 N -0.279 5.279 6 C 0.420 3.580 7 O -0.440 6.440 8 N -0.308 5.308 9 C 0.097 3.903 10 C -0.125 4.125 11 C -0.063 4.063 12 C -0.118 4.118 13 C -0.116 4.116 14 N -0.084 5.084 15 O 0.132 5.868 16 N -0.071 5.071 17 C -0.162 4.162 18 N -0.188 5.188 19 N -0.125 5.125 20 C 0.157 3.843 21 C -0.591 4.591 22 H 0.067 0.933 23 C -0.178 4.178 24 N -0.555 5.555 25 Si 0.793 3.207 26 H -0.201 1.201 27 H -0.195 1.195 28 H -0.194 1.194 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.122 0.878 32 H 0.191 0.809 33 H 0.261 0.739 34 H 0.264 0.736 35 H 0.178 0.822 36 H 0.202 0.798 37 H 0.192 0.808 38 H 0.043 0.957 39 H 0.071 0.929 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.534 24.397 3.573 25.782 hybrid contribution 0.079 -0.856 -0.442 0.967 sum 7.613 23.541 3.131 24.938 Atomic orbital electron populations 1.20509 0.85332 1.04391 1.04186 1.21777 0.96714 0.86376 0.99342 1.21424 0.89475 1.00126 1.21261 1.18858 0.87742 0.88885 1.01132 1.41212 1.07686 1.03317 1.75649 1.15466 0.84472 0.80344 0.77761 1.90850 1.24079 1.73198 1.55897 1.42033 1.09426 1.03736 1.75573 1.16900 0.94838 0.80717 0.97875 1.21416 0.97111 0.96006 0.97950 1.21164 0.98928 0.91172 0.95030 1.20240 0.90412 1.02746 0.98402 1.23199 0.97824 0.90433 1.00117 1.75236 1.06023 1.11327 1.15853 1.85380 1.41513 1.06623 1.53317 1.75047 1.12499 1.06378 1.13168 1.23939 0.95384 0.95281 1.01638 1.77183 1.00240 1.09767 1.31618 1.48790 1.01594 1.07584 1.54532 1.19243 0.94969 0.72452 0.97665 1.21440 1.47484 0.98325 0.91845 0.93282 1.25707 0.94016 0.95947 1.02103 1.69999 1.45099 1.07387 1.33033 0.85387 0.78223 0.78221 0.78861 1.20145 1.19509 1.19433 0.88745 0.91622 0.87794 0.80882 0.73877 0.73626 0.82196 0.79763 0.80755 0.95749 0.92854 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.70 9.89 71.23 0.70 -2.00 16 2 C 0.09 3.52 6.92 41.38 0.29 3.81 16 3 C -0.29 -11.05 9.52 22.11 0.21 -10.84 16 4 C 0.29 11.01 8.11 133.32 1.08 12.09 16 5 N -0.63 -17.49 5.46 -321.23 -1.75 -19.24 16 6 C 0.72 18.24 8.37 179.05 1.50 19.74 16 7 O -0.56 -16.72 10.91 -3.98 -0.04 -16.77 16 8 N -0.66 -12.39 5.37 -313.67 -1.68 -14.07 16 9 C 0.20 3.70 6.48 39.47 0.26 3.96 16 10 C -0.10 -1.58 8.63 22.22 0.19 -1.39 16 11 C -0.04 -0.39 9.84 22.01 0.22 -0.17 16 12 C -0.10 -1.07 10.03 22.25 0.22 -0.85 16 13 C 0.04 0.67 7.77 42.59 0.33 1.00 16 14 N -0.36 -7.08 12.29 -57.36 -0.71 -7.78 16 15 O 0.36 7.31 11.67 139.27 1.63 8.94 16 16 N -0.35 -7.38 12.27 -55.25 -0.68 -8.06 16 17 C -0.01 -0.13 7.92 44.00 0.35 0.22 16 18 N -0.36 -16.15 12.59 -54.44 -0.69 -16.84 16 19 N -0.34 -16.03 3.59 -338.44 -1.22 -17.24 16 20 C 0.28 14.26 5.81 85.63 0.50 14.76 16 21 C -0.55 -30.55 9.39 25.60 0.24 -30.31 16 22 H 0.05 2.81 7.81 -2.91 -0.02 2.78 16 23 C 0.02 1.27 5.46 84.66 0.46 1.73 16 24 N -0.92 -51.20 13.29 21.45 0.28 -50.91 16 25 Si 0.97 42.72 29.54 68.60 2.03 44.75 16 26 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 27 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 28 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 29 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 30 H 0.06 2.30 7.71 -2.39 -0.02 2.28 16 31 H 0.10 2.65 8.14 -2.38 -0.02 2.63 16 32 H 0.17 6.10 5.91 -2.91 -0.02 6.08 16 33 H 0.42 9.27 8.84 -92.71 -0.82 8.45 16 34 H 0.43 5.88 8.84 -92.71 -0.82 5.06 16 35 H 0.16 2.82 6.13 -2.91 -0.02 2.80 16 36 H 0.19 0.41 8.06 -2.91 -0.02 0.39 16 37 H 0.18 0.90 8.06 -2.91 -0.02 0.88 16 38 H 0.02 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.05 2.72 7.65 -2.39 -0.02 2.70 16 40 H 0.27 14.26 8.31 -92.70 -0.77 13.49 16 Total: -1.00 -70.25 354.17 3.23 -67.02 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -0.49 Total: 18.46 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 6.55 Total: 11.75 kcal Atomic # 7 Polarization: -127.71 SS G_CDS: -6.44 Total: -134.15 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 1.58 Total: -7.83 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -70.25 3.23 -67.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661086515.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 249.447 kcal (2) G-P(sol) polarization free energy of solvation -70.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 179.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds