Wall clock time and date at job start Wed Apr 1 2020 00:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 120.00065 * 2 1 4 4 H 1.48502 * 109.46881 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47117 * 299.99663 * 3 2 1 6 6 H 1.48502 * 109.47297 * 59.99734 * 3 2 1 7 7 C 1.38946 * 119.99588 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00077 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00383 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00505 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99773 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00351 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47435 * 180.02562 * 12 10 9 14 14 S 1.65597 * 120.00547 * 165.00011 * 13 12 10 15 15 O 1.42101 * 106.40012 * 311.46568 * 14 13 12 16 16 O 1.42092 * 106.40628 * 178.54318 * 14 13 12 17 17 C 1.76203 * 107.21493 * 64.99790 * 14 13 12 18 18 C 1.39868 * 126.04298 * 269.99867 * 17 14 13 19 19 N 1.30837 * 108.20148 * 180.02562 * 18 17 14 20 20 N 1.40081 * 108.20828 * 0.02562 * 19 18 17 21 21 C 1.46494 * 126.04084 * 180.26238 * 20 19 18 22 22 C 1.54274 * 110.03642 * 211.86132 * 21 20 19 23 23 C 1.54889 * 104.19674 * 217.10335 * 22 21 20 24 24 C 1.54895 * 102.74884 * 37.93811 * 23 22 21 25 25 C 1.53875 * 110.03652 * 94.68990 * 21 20 19 26 26 C 1.34954 * 107.92384 * 0.02562 * 20 19 18 27 27 H 0.97006 * 119.99539 * 359.97438 * 1 2 3 28 28 H 0.96998 * 119.99664 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.47229 * 60.00466 * 12 10 9 30 30 H 1.09003 * 109.47585 * 300.00607 * 12 10 9 31 31 H 0.97003 * 119.99557 * 345.00706 * 13 12 10 32 32 H 1.08001 * 125.89990 * 359.97438 * 18 17 14 33 33 H 1.09009 * 110.01603 * 333.30037 * 21 20 19 34 34 H 1.09000 * 110.48125 * 335.78279 * 22 21 20 35 35 H 1.09001 * 110.48858 * 98.42135 * 22 21 20 36 36 H 1.09000 * 110.75518 * 279.63129 * 23 22 21 37 37 H 1.09000 * 110.91117 * 156.32527 * 23 22 21 38 38 H 1.08994 * 110.48563 * 203.37600 * 24 23 22 39 39 H 1.09001 * 110.59740 * 80.79161 * 24 23 22 40 40 H 1.08990 * 110.03566 * 238.57500 * 25 21 20 41 41 H 1.09003 * 110.02920 * 0.02562 * 25 21 20 42 42 H 1.07999 * 126.12395 * 179.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3233 -2.3906 0.0016 10 6 1.9971 -3.5579 0.0016 11 8 3.2101 -3.5580 0.0011 12 6 1.2436 -4.8629 0.0022 13 7 2.1955 -5.9765 0.0027 14 16 1.6806 -7.5059 0.3745 15 8 0.9175 -7.3932 1.5679 16 8 2.8161 -8.3517 0.2550 17 6 0.5570 -7.9996 -0.8897 18 6 -0.8269 -7.7966 -0.8860 19 7 -1.3167 -8.2998 -1.9899 20 7 -0.2586 -8.8403 -2.7319 21 6 -0.3680 -9.4973 -4.0366 22 6 0.7090 -10.5940 -4.1682 23 6 1.1477 -10.5196 -5.6518 24 6 1.1282 -8.9974 -5.9381 25 6 -0.1015 -8.4822 -5.1620 26 6 0.8802 -8.6441 -2.0348 27 1 -0.4850 0.8401 0.0004 28 1 0.3533 -2.3906 0.0016 29 1 0.6166 -4.9209 -0.8876 30 1 0.6172 -4.9205 0.8924 31 1 3.1274 -5.8179 -0.2147 32 1 -1.3934 -7.3095 -0.1061 33 1 -1.3608 -9.9321 -4.1534 34 1 1.5517 -10.3819 -3.5101 35 1 0.2858 -11.5732 -3.9441 36 1 0.4365 -11.0420 -6.2916 37 1 2.1515 -10.9242 -5.7814 38 1 1.0110 -8.8116 -7.0056 39 1 2.0383 -8.5258 -5.5674 40 1 -0.9645 -8.4250 -5.8253 41 1 0.1097 -7.5008 -4.7373 42 1 1.8719 -8.9466 -2.3371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663226452.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:12 Heat of formation + Delta-G solvation = -41.395337 kcal Electronic energy + Delta-G solvation = -27457.890497 eV Core-core repulsion = 23373.368062 eV Total energy + Delta-G solvation = -4084.522435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.69042 -38.44823 -38.39512 -36.99193 -35.64588 -34.59814 -33.65784 -32.63310 -31.33103 -30.72868 -29.34659 -27.96695 -27.09938 -24.30339 -23.05923 -22.05874 -21.09603 -20.14826 -19.60861 -19.28182 -18.25271 -18.09793 -17.36776 -16.50422 -16.26370 -15.82991 -15.47842 -15.04824 -14.96416 -14.69308 -14.55654 -14.38692 -14.23724 -14.01307 -13.62074 -13.26779 -12.55113 -12.45935 -12.32741 -12.21172 -12.02877 -11.84381 -11.81934 -11.80403 -11.74380 -11.70204 -11.50675 -11.33227 -11.13889 -11.13589 -10.75357 -10.38928 -10.29336 -9.80776 -9.62559 -9.44141 -9.28960 -8.56928 -8.07030 -6.49309 -3.90770 0.62342 1.35469 2.05187 2.16003 3.11972 3.23874 3.29352 3.33975 3.73436 3.76611 3.92322 3.97963 4.11968 4.20269 4.26688 4.42679 4.66278 4.68834 4.79248 4.81837 4.86053 4.90855 5.01882 5.18179 5.18698 5.27990 5.35159 5.37040 5.48229 5.53109 5.54729 5.63032 5.73891 5.83794 5.90737 6.19614 6.32444 6.55677 7.23878 7.33214 7.48893 7.96579 8.49099 9.08200 9.42633 9.91368 10.67838 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.012841 B = 0.002791 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.036296 B =10030.018632 C =11049.997354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.025 3.975 3 Si 0.931 3.069 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.554 5.554 10 C 0.436 3.564 11 O -0.590 6.590 12 C 0.108 3.892 13 N -1.099 6.099 14 S 2.732 3.268 15 O -0.960 6.960 16 O -0.970 6.970 17 C -0.814 4.814 18 C 0.133 3.867 19 N -0.292 5.292 20 N -0.353 5.353 21 C 0.148 3.852 22 C -0.140 4.140 23 C -0.121 4.121 24 C -0.127 4.127 25 C -0.138 4.138 26 C 0.178 3.822 27 H 0.273 0.727 28 H 0.395 0.605 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.426 0.574 32 H 0.200 0.800 33 H 0.110 0.890 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.078 0.922 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.854 -20.452 -11.148 23.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.432 4.432 8 H 0.123 0.877 9 N -0.189 5.189 10 C 0.220 3.780 11 O -0.475 6.475 12 C -0.022 4.022 13 N -0.862 5.862 14 S 2.818 3.182 15 O -0.950 6.950 16 O -0.960 6.960 17 C -0.912 4.912 18 C -0.056 4.056 19 N -0.110 5.110 20 N -0.130 5.130 21 C 0.047 3.953 22 C -0.179 4.179 23 C -0.159 4.159 24 C -0.165 4.165 25 C -0.177 4.177 26 C 0.024 3.976 27 H 0.083 0.917 28 H 0.229 0.771 29 H 0.096 0.904 30 H 0.114 0.886 31 H 0.264 0.736 32 H 0.217 0.783 33 H 0.128 0.872 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.101 0.899 41 H 0.097 0.903 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -3.271 -21.080 -11.267 24.125 hybrid contribution 0.328 1.243 -0.304 1.321 sum -2.943 -19.838 -11.571 23.154 Atomic orbital electron populations 1.69621 1.05972 1.28314 1.49791 1.25302 0.95662 0.99863 0.96954 0.85773 0.79715 0.80921 0.77772 1.19154 1.20714 1.20633 1.19776 0.93487 0.82030 1.47912 0.87663 1.41825 1.09410 1.04516 1.63181 1.19651 0.88345 0.84729 0.85282 1.90506 1.13703 1.86650 1.56673 1.20904 0.91393 0.87158 1.02787 1.55126 1.19915 1.22763 1.88437 1.00641 0.72582 0.71746 0.73221 1.93566 1.72779 1.86081 1.42537 1.93552 1.49798 1.65350 1.87275 1.31750 1.11611 1.27262 1.20610 1.23611 0.91334 0.95346 0.95339 1.77437 1.10546 1.17081 1.05959 1.49435 1.04659 1.42796 1.16132 1.22237 1.02251 0.92674 0.78160 1.22896 0.98072 0.98164 0.98745 1.22477 1.02255 0.96612 0.94561 1.22413 0.97974 0.95440 1.00652 1.22640 0.99648 0.98997 0.96399 1.22326 0.93397 0.92232 0.89610 0.91726 0.77117 0.90388 0.88640 0.73555 0.78344 0.87217 0.89954 0.89842 0.90729 0.90352 0.90695 0.90902 0.89936 0.90348 0.79406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.70 13.05 55.50 0.72 -22.98 16 2 C 0.02 0.64 5.50 -17.47 -0.10 0.55 16 3 Si 0.93 20.52 29.55 -169.99 -5.02 15.50 16 4 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 6 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.30 -8.17 9.68 -14.94 -0.14 -8.32 16 8 H 0.11 2.98 7.16 -52.48 -0.38 2.61 16 9 N -0.55 -13.49 5.29 -10.96 -0.06 -13.55 16 10 C 0.44 9.82 7.85 -10.99 -0.09 9.74 16 11 O -0.59 -15.18 15.30 5.54 0.08 -15.10 16 12 C 0.11 1.81 6.70 -5.20 -0.03 1.77 16 13 N -1.10 -17.06 5.93 -11.66 -0.07 -17.13 16 14 S 2.73 38.95 5.88 -107.50 -0.63 38.32 16 15 O -0.96 -16.05 17.34 -57.17 -0.99 -17.04 16 16 O -0.97 -15.39 17.84 -57.17 -1.02 -16.41 16 17 C -0.81 -10.11 6.14 -40.01 -0.25 -10.36 16 18 C 0.13 1.65 11.82 -17.37 -0.21 1.44 16 19 N -0.29 -3.73 12.58 30.62 0.39 -3.35 16 20 N -0.35 -3.75 3.45 -53.77 -0.19 -3.94 16 21 C 0.15 1.10 4.01 -66.81 -0.27 0.84 16 22 C -0.14 -0.77 6.37 -25.07 -0.16 -0.93 16 23 C -0.12 -0.52 6.91 -24.74 -0.17 -0.69 16 24 C -0.13 -0.68 6.83 -25.07 -0.17 -0.85 16 25 C -0.14 -0.95 6.60 -25.61 -0.17 -1.12 16 26 C 0.18 1.92 10.18 -17.22 -0.18 1.74 16 27 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 28 H 0.40 9.11 7.90 -40.82 -0.32 8.79 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.10 1.46 7.75 -51.93 -0.40 1.06 16 31 H 0.43 6.88 7.70 -34.47 -0.27 6.61 16 32 H 0.20 2.02 8.06 -52.49 -0.42 1.60 16 33 H 0.11 0.76 8.14 -51.92 -0.42 0.34 16 34 H 0.08 0.47 5.93 -51.93 -0.31 0.16 16 35 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.70 7.92 -51.93 -0.41 0.29 16 42 H 0.19 1.51 6.87 -52.49 -0.36 1.14 16 LS Contribution 368.85 15.07 5.56 5.56 Total: -1.00 -35.22 368.85 -8.54 -43.76 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -5.39 Total: 12.55 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -1.93 Total: -6.19 kcal Atomic # 7 Polarization: -61.74 SS G_CDS: 0.80 Total: -60.94 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: -1.93 Total: -48.55 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Atomic # 16 Polarization: 38.95 SS G_CDS: -0.63 Total: 38.32 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.22 -8.54 -43.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663226452.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.368 kcal (2) G-P(sol) polarization free energy of solvation -35.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds