Wall clock time and date at job start Wed Apr 1 2020 00:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 120.00065 * 2 1 4 4 H 1.48502 * 109.46881 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47117 * 299.99663 * 3 2 1 6 6 H 1.48502 * 109.47297 * 59.99734 * 3 2 1 7 7 C 1.38946 * 119.99588 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00077 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00383 * 359.97438 * 7 2 1 10 10 C 1.34778 * 120.00505 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99773 * 0.02562 * 10 9 7 12 12 C 1.50693 * 120.00351 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47435 * 180.02562 * 12 10 9 14 14 S 1.65597 * 120.00547 * 165.00011 * 13 12 10 15 15 O 1.42101 * 106.40012 * 311.46568 * 14 13 12 16 16 O 1.42092 * 106.40628 * 178.54318 * 14 13 12 17 17 C 1.76203 * 107.21493 * 64.99790 * 14 13 12 18 18 C 1.39868 * 126.04298 * 269.99867 * 17 14 13 19 19 N 1.30837 * 108.20148 * 180.02562 * 18 17 14 20 20 N 1.40081 * 108.20828 * 0.02562 * 19 18 17 21 21 C 1.46494 * 126.04084 * 180.26238 * 20 19 18 22 22 C 1.54274 * 110.03642 * 211.86132 * 21 20 19 23 23 C 1.54889 * 104.19674 * 217.10335 * 22 21 20 24 24 C 1.54895 * 102.74884 * 37.93811 * 23 22 21 25 25 C 1.53875 * 110.03652 * 94.68990 * 21 20 19 26 26 C 1.34954 * 107.92384 * 0.02562 * 20 19 18 27 27 H 0.97006 * 119.99539 * 359.97438 * 1 2 3 28 28 H 0.96998 * 119.99664 * 0.02562 * 9 7 2 29 29 H 1.08999 * 109.47229 * 60.00466 * 12 10 9 30 30 H 1.09003 * 109.47585 * 300.00607 * 12 10 9 31 31 H 0.97003 * 119.99557 * 345.00706 * 13 12 10 32 32 H 1.08001 * 125.89990 * 359.97438 * 18 17 14 33 33 H 1.09009 * 110.01603 * 333.30037 * 21 20 19 34 34 H 1.09000 * 110.48125 * 335.78279 * 22 21 20 35 35 H 1.09001 * 110.48858 * 98.42135 * 22 21 20 36 36 H 1.09000 * 110.75518 * 279.63129 * 23 22 21 37 37 H 1.09000 * 110.91117 * 156.32527 * 23 22 21 38 38 H 1.08994 * 110.48563 * 203.37600 * 24 23 22 39 39 H 1.09001 * 110.59740 * 80.79161 * 24 23 22 40 40 H 1.08990 * 110.03566 * 238.57500 * 25 21 20 41 41 H 1.09003 * 110.02920 * 0.02562 * 25 21 20 42 42 H 1.07999 * 126.12395 * 179.97438 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3463 0.0006 5 1 1.8895 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3233 -2.3906 0.0016 10 6 1.9971 -3.5579 0.0016 11 8 3.2101 -3.5580 0.0011 12 6 1.2436 -4.8629 0.0022 13 7 2.1955 -5.9765 0.0027 14 16 1.6806 -7.5059 0.3745 15 8 0.9175 -7.3932 1.5679 16 8 2.8161 -8.3517 0.2550 17 6 0.5570 -7.9996 -0.8897 18 6 -0.8269 -7.7966 -0.8860 19 7 -1.3167 -8.2998 -1.9899 20 7 -0.2586 -8.8403 -2.7319 21 6 -0.3680 -9.4973 -4.0366 22 6 0.7090 -10.5940 -4.1682 23 6 1.1477 -10.5196 -5.6518 24 6 1.1282 -8.9974 -5.9381 25 6 -0.1015 -8.4822 -5.1620 26 6 0.8802 -8.6441 -2.0348 27 1 -0.4850 0.8401 0.0004 28 1 0.3533 -2.3906 0.0016 29 1 0.6166 -4.9209 -0.8876 30 1 0.6172 -4.9205 0.8924 31 1 3.1274 -5.8179 -0.2147 32 1 -1.3934 -7.3095 -0.1061 33 1 -1.3608 -9.9321 -4.1534 34 1 1.5517 -10.3819 -3.5101 35 1 0.2858 -11.5732 -3.9441 36 1 0.4365 -11.0420 -6.2916 37 1 2.1515 -10.9242 -5.7814 38 1 1.0110 -8.8116 -7.0056 39 1 2.0383 -8.5258 -5.5674 40 1 -0.9645 -8.4250 -5.8253 41 1 0.1097 -7.5008 -4.7373 42 1 1.8719 -8.9466 -2.3371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001663226452.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:11 Heat of formation + Delta-G solvation = -68.896095 kcal Electronic energy + Delta-G solvation = -27459.083019 eV Core-core repulsion = 23373.368062 eV Total energy + Delta-G solvation = -4085.714958 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.53526 -40.22323 -38.97678 -38.23226 -36.88920 -36.29069 -35.31136 -33.35626 -33.29961 -31.62603 -29.81213 -28.72473 -28.57981 -26.13082 -23.82968 -22.91050 -21.58707 -21.37854 -20.81404 -20.39381 -20.02579 -19.19865 -18.66295 -17.39686 -17.22032 -17.02252 -16.94429 -16.42082 -16.04889 -15.94988 -15.76621 -15.66678 -15.27789 -15.04249 -14.55524 -14.15056 -14.03886 -13.85006 -13.57632 -13.26293 -13.11655 -13.06593 -13.02998 -12.94859 -12.90179 -12.75855 -12.40136 -12.18379 -12.10224 -12.08641 -11.83834 -11.75008 -11.55061 -11.53998 -10.70256 -10.64887 -10.39229 -10.28334 -10.03827 -8.47533 -5.96495 -0.53360 0.48412 1.18855 1.31273 1.37136 1.44325 1.57867 1.98184 2.14837 2.32501 2.83053 3.09402 3.17337 3.20280 3.37202 3.45565 3.65492 3.77820 3.83544 4.07552 4.13667 4.27688 4.32089 4.36293 4.43415 4.45892 4.50496 4.52278 4.63103 4.78444 4.82460 4.94782 5.00653 5.15032 5.18868 5.30616 5.36092 5.42217 5.79258 5.93809 6.06355 6.34934 6.55292 7.09654 7.51136 8.03726 8.69577 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.012841 B = 0.002791 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.036296 B =10030.018632 C =11049.997354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.335 4.335 8 H 0.082 0.918 9 N -0.564 5.564 10 C 0.435 3.565 11 O -0.625 6.625 12 C 0.117 3.883 13 N -1.103 6.103 14 S 2.756 3.244 15 O -0.985 6.985 16 O -0.985 6.985 17 C -0.823 4.823 18 C 0.126 3.874 19 N -0.315 5.315 20 N -0.348 5.348 21 C 0.139 3.861 22 C -0.138 4.138 23 C -0.114 4.114 24 C -0.126 4.126 25 C -0.136 4.136 26 C 0.181 3.819 27 H 0.279 0.721 28 H 0.400 0.600 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.423 0.577 32 H 0.214 0.786 33 H 0.115 0.885 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.066 0.934 40 H 0.090 0.910 41 H 0.055 0.945 42 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.212 -21.388 -12.352 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.100 0.900 9 N -0.201 5.201 10 C 0.221 3.779 11 O -0.512 6.512 12 C -0.013 4.013 13 N -0.865 5.865 14 S 2.845 3.155 15 O -0.975 6.975 16 O -0.976 6.976 17 C -0.924 4.924 18 C -0.064 4.064 19 N -0.133 5.133 20 N -0.125 5.125 21 C 0.039 3.961 22 C -0.177 4.177 23 C -0.151 4.151 24 C -0.164 4.164 25 C -0.175 4.175 26 C 0.026 3.974 27 H 0.088 0.912 28 H 0.235 0.765 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.261 0.739 32 H 0.231 0.769 33 H 0.133 0.867 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.104 0.896 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.108 0.892 41 H 0.073 0.927 42 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -3.646 -22.024 -12.464 25.568 hybrid contribution 0.417 1.434 0.000 1.493 sum -3.229 -20.590 -12.463 24.284 Atomic orbital electron populations 1.69675 1.06815 1.29386 1.49743 1.26043 0.96527 1.02429 0.96059 0.84871 0.78104 0.77099 0.78269 1.19698 1.19617 1.19750 1.19729 0.92851 0.83771 1.50063 0.89954 1.41873 1.09606 1.04575 1.64001 1.20593 0.88239 0.86059 0.82977 1.90481 1.15589 1.87557 1.57588 1.20897 0.91128 0.84118 1.05200 1.55152 1.19704 1.22915 1.88722 0.99699 0.72050 0.70878 0.72868 1.93529 1.73194 1.86277 1.44496 1.93525 1.50912 1.65493 1.87623 1.31371 1.11203 1.28935 1.20920 1.23941 0.91449 0.95320 0.95662 1.77393 1.11795 1.17771 1.06386 1.49693 1.04119 1.42014 1.16650 1.22597 1.03429 0.93238 0.76847 1.22941 0.97338 0.97782 0.99621 1.22470 1.03146 0.95758 0.93766 1.22419 0.96849 0.96231 1.00875 1.22624 1.00791 0.97667 0.96405 1.22758 0.94510 0.91155 0.88990 0.91185 0.76532 0.87230 0.86851 0.73905 0.76936 0.86732 0.90037 0.88825 0.89570 0.89377 0.89832 0.91472 0.89170 0.92653 0.76894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.08 13.05 21.66 0.28 -47.80 16 2 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 3 Si 0.99 41.89 29.55 68.60 2.03 43.92 16 4 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 5 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 7 C -0.33 -18.39 9.68 84.04 0.81 -17.58 16 8 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 9 N -0.56 -27.77 5.29 -306.99 -1.62 -29.40 16 10 C 0.44 19.71 7.85 87.65 0.69 20.40 16 11 O -0.62 -32.72 15.30 -3.08 -0.05 -32.77 16 12 C 0.12 3.79 6.70 85.63 0.57 4.36 16 13 N -1.10 -33.47 5.93 -190.80 -1.13 -34.60 16 14 S 2.76 76.11 5.88 -56.49 -0.33 75.77 16 15 O -0.98 -32.18 17.34 -128.00 -2.22 -34.40 16 16 O -0.99 -30.39 17.84 -128.00 -2.28 -32.67 16 17 C -0.82 -19.37 6.14 21.99 0.14 -19.23 16 18 C 0.13 2.96 11.82 85.24 1.01 3.96 16 19 N -0.32 -7.69 12.58 -57.02 -0.72 -8.41 16 20 N -0.35 -6.89 3.45 -324.04 -1.12 -8.01 16 21 C 0.14 1.83 4.01 45.72 0.18 2.02 16 22 C -0.14 -1.19 6.37 31.67 0.20 -0.99 16 23 C -0.11 -0.68 6.91 31.89 0.22 -0.46 16 24 C -0.13 -1.11 6.83 31.67 0.22 -0.89 16 25 C -0.14 -1.70 6.60 31.32 0.21 -1.49 16 26 C 0.18 3.61 10.18 83.54 0.85 4.46 16 27 H 0.28 13.68 8.31 -92.70 -0.77 12.91 16 28 H 0.40 18.53 7.90 -92.71 -0.73 17.80 16 29 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 30 H 0.11 3.32 7.75 -2.39 -0.02 3.30 16 31 H 0.42 13.61 7.70 -96.74 -0.75 12.86 16 32 H 0.21 4.08 8.06 -2.91 -0.02 4.06 16 33 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 34 H 0.08 0.73 5.93 -2.39 -0.01 0.71 16 35 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.05 0.96 7.92 -2.39 -0.02 0.94 16 42 H 0.21 2.96 6.87 -2.91 -0.02 2.94 16 Total: -1.00 -75.26 368.85 -2.00 -77.26 By element: Atomic # 1 Polarization: 37.00 SS G_CDS: -0.40 Total: 36.60 kcal Atomic # 6 Polarization: -11.07 SS G_CDS: 5.56 Total: -5.50 kcal Atomic # 7 Polarization: -123.90 SS G_CDS: -4.31 Total: -128.20 kcal Atomic # 8 Polarization: -95.29 SS G_CDS: -4.55 Total: -99.84 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Atomic # 16 Polarization: 76.11 SS G_CDS: -0.33 Total: 75.77 kcal Total: -75.26 -2.00 -77.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663226452.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.359 kcal (2) G-P(sol) polarization free energy of solvation -75.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds