Wall clock time and date at job start Wed Apr 1 2020 00:34:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86794 * 120.00455 * 2 1 4 4 H 1.48499 * 109.47358 * 269.99667 * 3 2 1 5 5 H 1.48501 * 109.46972 * 29.99941 * 3 2 1 6 6 H 1.48508 * 109.47425 * 149.99706 * 3 2 1 7 7 C 1.38956 * 119.99688 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99666 * 0.02562 * 7 2 1 9 9 N 1.37096 * 119.99988 * 180.02562 * 7 2 1 10 10 C 1.34782 * 119.99810 * 180.02562 * 9 7 2 11 11 O 1.21290 * 119.99841 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99530 * 179.97438 * 10 9 7 13 13 N 1.46501 * 109.46913 * 179.97438 * 12 10 9 14 14 S 1.65596 * 120.00117 * 161.41720 * 13 12 10 15 15 O 1.42103 * 106.40103 * 313.15677 * 14 13 12 16 16 O 1.42104 * 106.39967 * 180.24057 * 14 13 12 17 17 C 1.76193 * 107.21876 * 66.69937 * 14 13 12 18 18 C 1.35325 * 126.12445 * 331.53010 * 17 14 13 19 19 C 1.39864 * 107.91750 * 180.28516 * 18 17 14 20 20 N 1.30841 * 108.20585 * 359.55727 * 19 18 17 21 21 N 1.34942 * 126.12955 * 151.55946 * 17 14 13 22 22 C 1.46497 * 126.03792 * 359.95508 * 21 17 14 23 23 C 1.52998 * 109.47304 * 89.99918 * 22 21 17 24 24 C 1.53775 * 113.61662 * 272.50112 * 23 22 21 25 25 C 1.53783 * 87.08066 * 220.01621 * 24 23 22 26 26 C 1.53777 * 87.08067 * 25.43248 * 25 24 23 27 27 H 0.97008 * 119.99810 * 359.97438 * 1 2 3 28 28 H 0.97000 * 119.99921 * 0.02562 * 9 7 2 29 29 H 1.09003 * 109.47302 * 60.00177 * 12 10 9 30 30 H 1.09000 * 109.47120 * 299.99709 * 12 10 9 31 31 H 0.97011 * 119.99629 * 341.42194 * 13 12 10 32 32 H 1.07992 * 126.04167 * 0.02653 * 18 17 14 33 33 H 1.08008 * 125.89947 * 179.73067 * 19 18 17 34 34 H 1.09003 * 109.47549 * 210.00380 * 22 21 17 35 35 H 1.09002 * 109.47357 * 329.99995 * 22 21 17 36 36 H 1.09003 * 112.85044 * 43.80872 * 23 22 21 37 37 H 1.09006 * 113.61554 * 334.56434 * 24 23 22 38 38 H 1.08999 * 113.61559 * 105.47170 * 24 23 22 39 39 H 1.09001 * 113.61727 * 270.87842 * 25 24 23 40 40 H 1.08999 * 113.61296 * 139.98305 * 25 24 23 41 41 H 1.09003 * 113.61237 * 220.01662 * 26 25 24 42 42 H 1.08999 * 113.69402 * 89.12503 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0463 -1.4000 5 1 1.4457 2.6526 0.7000 6 1 3.5458 1.4400 0.7001 7 6 2.0088 -1.2034 0.0005 8 1 1.4687 -2.1387 0.0005 9 7 3.3798 -1.2035 0.0011 10 6 4.0536 -2.3708 0.0011 11 8 3.4470 -3.4211 0.0011 12 6 5.5606 -2.3708 0.0011 13 7 6.0489 -3.7521 0.0017 14 16 7.6064 -4.0799 -0.4552 15 8 7.8326 -3.3568 -1.6574 16 8 7.7664 -5.4882 -0.3535 17 6 8.6667 -3.3696 0.7596 18 6 8.3936 -2.2845 1.5207 19 6 9.4970 -2.0503 2.3477 20 7 10.3962 -2.9676 2.0992 21 7 9.8968 -3.8099 1.0974 22 6 10.5877 -4.9650 0.5190 23 6 11.4101 -4.5146 -0.6901 24 6 10.6183 -4.5150 -2.0083 25 6 11.8857 -5.0720 -2.6779 26 6 12.2729 -5.6323 -1.2992 27 1 -0.4850 0.8401 0.0004 28 1 3.8648 -0.3635 0.0014 29 1 5.9240 -1.8570 0.8911 30 1 5.9239 -1.8570 -0.8889 31 1 5.4597 -4.4746 0.2697 32 1 7.4861 -1.7000 1.4914 33 1 9.5895 -1.2519 3.0692 34 1 11.2497 -5.4038 1.2656 35 1 9.8540 -5.7067 0.2033 36 1 11.9580 -3.5899 -0.5085 37 1 9.7796 -5.2112 -2.0138 38 1 10.3444 -3.5180 -2.3535 39 1 12.5632 -4.2993 -3.0413 40 1 11.6837 -5.8430 -3.4215 41 1 13.3347 -5.5374 -1.0719 42 1 11.8873 -6.6340 -1.1094 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001663813948.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:55 Heat of formation + Delta-G solvation = 0.525232 kcal Electronic energy + Delta-G solvation = -28096.785108 eV Core-core repulsion = 24014.080485 eV Total energy + Delta-G solvation = -4082.704623 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 2.85 seconds Orbital eigenvalues (eV) -41.55829 -39.19570 -38.72932 -37.44820 -36.13923 -34.99080 -33.96111 -33.48929 -31.83583 -30.80013 -28.34127 -27.54751 -25.97025 -24.27114 -23.88942 -22.36652 -21.62886 -19.85476 -19.79754 -19.52599 -18.76609 -18.17420 -17.59773 -16.51301 -16.01942 -15.96336 -15.72490 -15.61964 -15.19661 -14.80130 -14.57301 -14.53327 -14.25895 -14.11469 -13.44232 -13.24335 -12.88091 -12.73184 -12.66347 -12.52169 -12.46894 -12.31738 -12.24379 -11.96649 -11.84731 -11.76440 -11.29004 -11.20151 -11.03653 -10.75612 -10.68842 -10.58704 -10.09784 -10.02629 -9.78718 -9.69711 -9.05166 -8.80344 -8.34517 -6.43655 -3.96642 0.02866 1.02666 2.00776 2.35337 2.72165 2.94164 3.00196 3.09432 3.29489 3.48789 3.99713 4.00720 4.21105 4.23489 4.23664 4.34809 4.45896 4.49463 4.80371 4.86378 4.92243 5.02380 5.07495 5.09441 5.16406 5.30131 5.35988 5.38613 5.45913 5.52567 5.59331 5.60691 5.76013 5.81741 5.85404 6.08215 6.23007 6.43499 6.95919 7.17131 7.40986 7.97234 8.41169 8.78776 9.25584 9.58842 10.68451 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.019498 B = 0.002884 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.693603 B = 9705.197906 C =10166.639891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.310 4.310 8 H 0.122 0.878 9 N -0.577 5.577 10 C 0.443 3.557 11 O -0.569 6.569 12 C 0.095 3.905 13 N -1.085 6.085 14 S 2.714 3.286 15 O -0.934 6.934 16 O -0.952 6.952 17 C -0.484 4.484 18 C -0.171 4.171 19 C 0.033 3.967 20 N -0.260 5.260 21 N -0.301 5.301 22 C 0.107 3.893 23 C -0.135 4.135 24 C -0.159 4.159 25 C -0.136 4.136 26 C -0.129 4.129 27 H 0.276 0.724 28 H 0.374 0.626 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.433 0.567 32 H 0.164 0.836 33 H 0.194 0.806 34 H 0.109 0.891 35 H 0.120 0.880 36 H 0.102 0.898 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.118 -4.741 0.682 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.140 0.860 9 N -0.215 5.215 10 C 0.227 3.773 11 O -0.453 6.453 12 C -0.035 4.035 13 N -0.852 5.852 14 S 2.795 3.205 15 O -0.923 6.923 16 O -0.941 6.941 17 C -0.693 4.693 18 C -0.202 4.202 19 C -0.151 4.151 20 N -0.084 5.084 21 N -0.085 5.085 22 C -0.014 4.014 23 C -0.155 4.155 24 C -0.196 4.196 25 C -0.173 4.173 26 C -0.167 4.167 27 H 0.087 0.913 28 H 0.207 0.793 29 H 0.102 0.898 30 H 0.121 0.879 31 H 0.273 0.727 32 H 0.181 0.819 33 H 0.211 0.789 34 H 0.127 0.873 35 H 0.138 0.862 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.101 0.899 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 25.116 -6.189 0.167 25.868 hybrid contribution -0.373 2.010 0.799 2.195 sum 24.743 -4.179 0.966 25.112 Atomic orbital electron populations 1.69619 1.05733 1.27839 1.47990 1.25075 0.95534 0.98174 0.97144 0.86679 0.79846 0.83796 0.79176 1.19326 1.20010 1.19230 1.19449 0.78887 0.96848 1.48719 0.86012 1.42136 1.07759 1.06014 1.65596 1.19389 0.87513 0.84972 0.85389 1.90563 1.68698 1.30916 1.55075 1.21222 0.96812 0.82164 1.03296 1.54923 1.28454 1.15712 1.86142 1.01673 0.72153 0.73298 0.73339 1.93657 1.84760 1.74122 1.39719 1.93582 1.85472 1.28467 1.86599 1.33766 1.02813 1.10835 1.21851 1.21782 1.01938 0.97780 0.98711 1.24102 0.91690 0.98739 1.00562 1.77255 1.22836 1.03766 1.04539 1.48337 1.09926 1.22773 1.27429 1.22514 0.98003 0.84579 0.96256 1.23134 0.98327 1.00972 0.93024 1.23295 0.97554 1.03220 0.95562 1.22735 0.97350 1.00744 0.96490 1.22910 0.99696 0.97971 0.96123 0.91347 0.79288 0.89783 0.87905 0.72653 0.81875 0.78881 0.87310 0.86181 0.87955 0.89820 0.89696 0.89857 0.90756 0.90800 0.89331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.37 13.96 55.50 0.77 -23.59 16 2 C 0.05 1.17 5.50 -17.47 -0.10 1.08 16 3 Si 0.88 18.12 27.74 -169.99 -4.71 13.40 16 4 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 6 H -0.27 -4.86 6.52 56.52 0.37 -4.49 16 7 C -0.31 -8.27 10.16 -14.93 -0.15 -8.42 16 8 H 0.12 3.73 7.39 -52.49 -0.39 3.34 16 9 N -0.58 -12.63 5.09 -10.96 -0.06 -12.68 16 10 C 0.44 9.16 7.85 -10.98 -0.09 9.07 16 11 O -0.57 -14.00 15.34 5.55 0.09 -13.92 16 12 C 0.10 1.40 6.19 -5.19 -0.03 1.36 16 13 N -1.09 -15.55 5.85 -11.65 -0.07 -15.62 16 14 S 2.71 36.87 4.93 -107.50 -0.53 36.34 16 15 O -0.93 -14.12 16.21 -57.17 -0.93 -15.05 16 16 O -0.95 -13.86 15.49 -57.17 -0.89 -14.75 16 17 C -0.48 -6.17 6.90 -17.22 -0.12 -6.29 16 18 C -0.17 -1.93 10.29 -40.01 -0.41 -2.34 16 19 C 0.03 0.36 12.02 -17.37 -0.21 0.15 16 20 N -0.26 -3.26 12.58 30.63 0.39 -2.87 16 21 N -0.30 -3.75 3.61 -60.48 -0.22 -3.97 16 22 C 0.11 1.10 6.07 -4.04 -0.02 1.07 16 23 C -0.14 -1.25 3.96 -89.81 -0.36 -1.60 16 24 C -0.16 -1.64 6.46 -25.92 -0.17 -1.81 16 25 C -0.14 -1.06 8.08 -25.92 -0.21 -1.27 16 26 C -0.13 -0.91 7.64 -25.92 -0.20 -1.11 16 27 H 0.28 7.10 8.31 -40.82 -0.34 6.76 16 28 H 0.37 6.98 5.76 -40.82 -0.24 6.74 16 29 H 0.08 0.93 5.64 -51.93 -0.29 0.63 16 30 H 0.10 1.32 7.64 -51.93 -0.40 0.92 16 31 H 0.43 6.44 7.77 -34.47 -0.27 6.18 16 32 H 0.16 1.46 5.33 -52.49 -0.28 1.18 16 33 H 0.19 1.33 8.06 -52.48 -0.42 0.91 16 34 H 0.11 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.12 1.26 5.59 -51.93 -0.29 0.97 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.08 0.93 7.10 -51.93 -0.37 0.56 16 38 H 0.08 0.97 7.81 -51.93 -0.41 0.57 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.09 0.55 8.10 -51.93 -0.42 0.13 16 LS Contribution 357.86 15.07 5.39 5.39 Total: -1.00 -34.21 357.86 -7.87 -42.09 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: -5.05 Total: 15.34 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -2.06 Total: -10.11 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: 0.82 Total: -58.73 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -1.73 Total: -43.72 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -4.71 Total: 13.40 kcal Atomic # 16 Polarization: 36.87 SS G_CDS: -0.53 Total: 36.34 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.21 -7.87 -42.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001663813948.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.611 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.85 seconds