Wall clock time and date at job start Wed Apr 1 2020 00:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86794 * 120.00252 * 2 1 4 4 H 1.48500 * 109.46990 * 90.00525 * 3 2 1 5 5 H 1.48503 * 109.47303 * 210.00339 * 3 2 1 6 6 H 1.48497 * 109.47372 * 330.00611 * 3 2 1 7 7 C 1.40030 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00306 * 15.95513 * 7 2 1 9 9 C 1.41337 * 119.99630 * 195.95740 * 7 2 1 10 10 C 1.40608 * 119.78463 * 188.65439 * 9 7 2 11 11 C 1.38314 * 119.13031 * 179.70233 * 10 9 7 12 12 C 1.38695 * 118.66655 * 0.56475 * 11 10 9 13 13 C 1.39641 * 119.49577 * 359.71933 * 12 11 10 14 14 N 1.39249 * 119.57287 * 179.97438 * 13 12 11 15 15 C 1.34771 * 120.00231 * 18.78570 * 14 13 12 16 16 O 1.21581 * 119.99979 * 5.79082 * 15 14 13 17 17 N 1.34767 * 120.00441 * 185.78464 * 15 14 13 18 18 C 1.46504 * 120.00291 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47007 * 180.02562 * 18 17 15 20 20 C 1.53005 * 109.47153 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47516 * 179.97438 * 20 19 18 22 22 S 1.81401 * 109.47311 * 179.97438 * 21 20 19 23 23 N 1.65596 * 104.44822 * 179.97438 * 22 21 20 24 24 O 1.42102 * 110.54289 * 291.62508 * 22 21 20 25 25 O 1.42105 * 110.54112 * 68.37447 * 22 21 20 26 26 N 1.31928 * 120.85228 * 359.97438 * 13 12 11 27 27 H 0.96998 * 119.99921 * 174.92941 * 1 2 3 28 28 H 1.07998 * 120.43541 * 0.02562 * 10 9 7 29 29 H 1.08000 * 120.66754 * 180.25973 * 11 10 9 30 30 H 1.07999 * 120.25122 * 179.74544 * 12 11 10 31 31 H 0.96999 * 120.00037 * 198.78123 * 14 13 12 32 32 H 0.97007 * 120.00028 * 0.02562 * 17 15 14 33 33 H 1.08991 * 109.47171 * 300.00475 * 18 17 15 34 34 H 1.09000 * 109.46633 * 60.00927 * 18 17 15 35 35 H 1.09005 * 109.47382 * 299.99869 * 19 18 17 36 36 H 1.08995 * 109.47549 * 60.00266 * 19 18 17 37 37 H 1.09005 * 109.46549 * 299.99986 * 20 19 18 38 38 H 1.09008 * 109.47229 * 59.99717 * 20 19 18 39 39 H 1.09002 * 109.46632 * 300.00041 * 21 20 19 40 40 H 1.08997 * 109.46640 * 59.99507 * 21 20 19 41 41 H 0.97004 * 119.99546 * 150.00011 * 23 22 21 42 42 H 0.96997 * 120.00426 * 329.99969 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4891 2.0462 1.4001 5 1 3.5391 1.4401 -0.7001 6 1 1.4390 2.6527 -0.6999 7 6 2.0075 -1.2127 -0.0005 8 1 1.4987 -2.1299 -0.2580 9 6 3.3801 -1.2365 0.3360 10 6 4.1222 -2.4176 0.1594 11 6 5.4659 -2.4239 0.4873 12 6 6.0331 -1.2632 0.9919 13 6 5.2416 -0.1236 1.1499 14 7 5.8092 1.0425 1.6569 15 6 7.1471 1.2042 1.6379 16 8 7.8510 0.3819 1.0845 17 7 7.7046 2.2776 2.2323 18 6 9.1590 2.4531 2.2122 19 6 9.5276 3.7406 2.9518 20 6 11.0464 3.9243 2.9303 21 6 11.4151 5.2122 3.6694 22 16 13.2158 5.4295 3.6444 23 7 13.4729 6.8432 4.4675 24 8 13.8488 4.4386 4.4424 25 8 13.6665 5.7057 2.3253 26 7 3.9630 -0.1375 0.8251 27 1 -0.4850 -0.8367 -0.0742 28 1 3.6505 -3.3067 -0.2321 29 1 6.0604 -3.3162 0.3576 30 1 7.0790 -1.2407 1.2602 31 1 5.2418 1.7384 2.0237 32 1 7.1430 2.9336 2.6742 33 1 9.6343 1.6038 2.7029 34 1 9.5031 2.5155 1.1798 35 1 9.0523 4.5902 2.4614 36 1 9.1835 3.6779 3.9842 37 1 11.5220 3.0748 3.4204 38 1 11.3902 3.9872 1.8977 39 1 10.9394 6.0614 3.1788 40 1 11.0712 5.1497 4.7018 41 1 14.2958 6.9722 4.9646 42 1 12.8006 7.5423 4.4526 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001664366039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:49 Heat of formation + Delta-G solvation = -83.566783 kcal Electronic energy + Delta-G solvation = -26192.004864 eV Core-core repulsion = 22105.653738 eV Total energy + Delta-G solvation = -4086.351126 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.33163 -38.38762 -37.50750 -36.74581 -36.40340 -34.55296 -34.17784 -33.74591 -33.43206 -31.04631 -30.16659 -28.87785 -25.36366 -24.59892 -22.30269 -21.94159 -21.67787 -20.26029 -19.93692 -18.68518 -18.14898 -17.90355 -17.73453 -17.04018 -16.85624 -16.20533 -15.76574 -15.49631 -15.15518 -14.96093 -14.70960 -14.09206 -14.07846 -13.64591 -13.30639 -13.14994 -12.95189 -12.67175 -12.64052 -12.57490 -12.44934 -12.25746 -12.21700 -11.85894 -11.84139 -11.33097 -11.28243 -11.19484 -10.88827 -10.86180 -10.32143 -9.98580 -9.77251 -9.41765 -9.12478 -9.05510 -8.49281 -7.89613 -7.36699 -7.25888 -4.73945 -0.30425 2.32091 2.40612 2.67167 2.70737 3.14803 3.39756 3.45551 3.62988 3.70264 3.83433 3.89312 4.21167 4.25053 4.33074 4.51018 4.61269 4.63171 4.67759 4.96549 5.13468 5.14479 5.36252 5.41173 5.56008 5.67680 5.70033 5.87023 6.11011 6.29648 6.44412 6.46097 6.57214 6.68863 6.89633 7.19440 7.35267 7.45711 7.65208 7.78932 7.92065 8.20966 8.35359 8.65034 8.74924 9.46414 9.98458 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.024465 B = 0.001798 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.214519 B =15572.917377 C =16451.547259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.049 3.951 3 Si 1.145 2.855 4 H -0.289 1.289 5 H -0.280 1.280 6 H -0.328 1.328 7 C -0.483 4.483 8 H 0.084 0.916 9 C 0.276 3.724 10 C -0.280 4.280 11 C -0.036 4.036 12 C -0.310 4.310 13 C 0.399 3.601 14 N -0.667 5.667 15 C 0.708 3.292 16 O -0.563 6.563 17 N -0.748 5.748 18 C 0.135 3.865 19 C -0.123 4.123 20 C -0.111 4.111 21 C -0.622 4.622 22 S 2.614 3.386 23 N -1.252 6.252 24 O -0.961 6.961 25 O -0.959 6.959 26 N -0.597 5.597 27 H 0.284 0.716 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.140 0.860 31 H 0.403 0.597 32 H 0.396 0.604 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.135 0.865 40 H 0.138 0.862 41 H 0.420 0.580 42 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.640 16.162 10.890 28.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C -0.173 4.173 3 Si 0.978 3.022 4 H -0.216 1.216 5 H -0.207 1.207 6 H -0.260 1.260 7 C -0.515 4.515 8 H 0.102 0.898 9 C 0.152 3.848 10 C -0.302 4.302 11 C -0.060 4.060 12 C -0.335 4.335 13 C 0.167 3.833 14 N -0.314 5.314 15 C 0.408 3.592 16 O -0.439 6.439 17 N -0.405 5.405 18 C 0.011 3.989 19 C -0.162 4.162 20 C -0.151 4.151 21 C -0.752 4.752 22 S 2.705 3.295 23 N -0.925 5.925 24 O -0.951 6.951 25 O -0.948 6.948 26 N -0.322 5.322 27 H 0.095 0.905 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.158 0.842 31 H 0.238 0.762 32 H 0.230 0.770 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.153 0.847 40 H 0.156 0.844 41 H 0.250 0.750 42 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 21.201 16.930 10.077 28.942 hybrid contribution -0.759 -1.243 0.708 1.619 sum 20.442 15.687 10.784 27.933 Atomic orbital electron populations 1.70614 1.08256 1.33007 1.30850 1.27647 0.95230 1.05949 0.88466 0.82114 0.72766 0.70061 0.77247 1.21649 1.20723 1.26024 1.20648 0.93162 0.96991 1.40703 0.89839 1.18168 0.92905 0.85995 0.87741 1.21600 0.94674 0.99825 1.14132 1.20921 0.94310 0.96324 0.94481 1.21542 1.01965 0.92760 1.17194 1.17780 0.89534 0.83835 0.92119 1.42314 1.05532 1.20438 1.63108 1.15704 0.81715 0.82125 0.79631 1.90862 1.61279 1.43320 1.48398 1.45074 1.07985 1.26185 1.61228 1.21203 0.79300 0.97176 1.01265 1.21739 0.94672 0.98023 1.01816 1.21232 0.98144 0.94368 1.01317 1.30476 1.26217 1.07782 1.10716 1.04782 0.77089 0.73305 0.74290 1.53238 1.31177 1.35880 1.72180 1.93626 1.72978 1.58918 1.69564 1.93644 1.78231 1.83664 1.39296 1.66125 1.10163 1.30338 1.25593 0.90475 0.87754 0.87687 0.84217 0.76249 0.76988 0.91114 0.91118 0.90542 0.90546 0.89470 0.89478 0.84654 0.84417 0.75001 0.76111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.77 13.65 55.55 0.76 -21.01 16 2 C 0.05 1.32 5.51 -17.34 -0.10 1.22 16 3 Si 1.14 27.45 25.93 -169.99 -4.41 23.04 16 4 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.93 6.55 56.52 0.37 -6.56 16 6 H -0.33 -7.72 7.11 56.52 0.40 -7.31 16 7 C -0.48 -13.19 9.51 -37.73 -0.36 -13.55 16 8 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 9 C 0.28 7.31 6.27 -85.00 -0.53 6.78 16 10 C -0.28 -6.78 9.83 -38.66 -0.38 -7.16 16 11 C -0.04 -0.81 10.15 -39.38 -0.40 -1.21 16 12 C -0.31 -7.12 8.83 -38.89 -0.34 -7.47 16 13 C 0.40 9.24 7.51 -154.99 -1.16 8.08 16 14 N -0.67 -12.28 5.42 -15.79 -0.09 -12.37 16 15 C 0.71 11.87 8.40 -86.93 -0.73 11.14 16 16 O -0.56 -11.42 13.14 5.29 0.07 -11.35 16 17 N -0.75 -8.26 5.56 -65.23 -0.36 -8.62 16 18 C 0.14 1.21 5.67 -4.04 -0.02 1.19 16 19 C -0.12 -0.63 5.33 -26.73 -0.14 -0.77 16 20 C -0.11 -0.52 5.22 -26.73 -0.14 -0.66 16 21 C -0.62 -1.46 6.18 37.16 0.23 -1.23 16 22 S 2.61 13.24 5.97 -107.50 -0.64 12.60 16 23 N -1.25 -2.44 9.36 60.35 0.57 -1.88 16 24 O -0.96 -8.82 18.10 -57.54 -1.04 -9.86 16 25 O -0.96 -9.04 18.10 -57.54 -1.04 -10.08 16 26 N -0.60 -15.17 5.07 -10.26 -0.05 -15.22 16 27 H 0.28 7.36 8.73 -40.82 -0.36 7.01 16 28 H 0.10 2.35 8.06 -52.49 -0.42 1.93 16 29 H 0.11 2.01 8.06 -52.49 -0.42 1.58 16 30 H 0.14 3.17 5.33 -52.51 -0.28 2.89 16 31 H 0.40 6.33 8.84 -40.82 -0.36 5.97 16 32 H 0.40 3.13 8.49 -40.82 -0.35 2.79 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.40 8.14 -51.92 -0.42 -0.02 16 39 H 0.14 0.03 8.14 -51.92 -0.42 -0.39 16 40 H 0.14 0.07 8.14 -51.93 -0.42 -0.35 16 41 H 0.42 0.62 8.96 -34.46 -0.31 0.31 16 42 H 0.41 -0.35 8.96 -34.47 -0.31 -0.66 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -39.47 368.11 -10.21 -49.68 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.44 Total: 3.15 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -4.08 Total: -3.62 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: 0.82 Total: -59.10 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -2.01 Total: -31.28 kcal Atomic # 14 Polarization: 27.45 SS G_CDS: -4.41 Total: 23.04 kcal Atomic # 16 Polarization: 13.24 SS G_CDS: -0.64 Total: 12.60 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -39.47 -10.21 -49.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664366039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.890 kcal (2) G-P(sol) polarization free energy of solvation -39.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds