Wall clock time and date at job start Wed Apr 1 2020 00:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30747 * 1 3 3 Si 1.86794 * 120.00252 * 2 1 4 4 H 1.48500 * 109.46990 * 90.00525 * 3 2 1 5 5 H 1.48503 * 109.47303 * 210.00339 * 3 2 1 6 6 H 1.48497 * 109.47372 * 330.00611 * 3 2 1 7 7 C 1.40030 * 119.99683 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00306 * 15.95513 * 7 2 1 9 9 C 1.41337 * 119.99630 * 195.95740 * 7 2 1 10 10 C 1.40608 * 119.78463 * 188.65439 * 9 7 2 11 11 C 1.38314 * 119.13031 * 179.70233 * 10 9 7 12 12 C 1.38695 * 118.66655 * 0.56475 * 11 10 9 13 13 C 1.39641 * 119.49577 * 359.71933 * 12 11 10 14 14 N 1.39249 * 119.57287 * 179.97438 * 13 12 11 15 15 C 1.34771 * 120.00231 * 18.78570 * 14 13 12 16 16 O 1.21581 * 119.99979 * 5.79082 * 15 14 13 17 17 N 1.34767 * 120.00441 * 185.78464 * 15 14 13 18 18 C 1.46504 * 120.00291 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47007 * 180.02562 * 18 17 15 20 20 C 1.53005 * 109.47153 * 180.02562 * 19 18 17 21 21 C 1.53000 * 109.47516 * 179.97438 * 20 19 18 22 22 S 1.81401 * 109.47311 * 179.97438 * 21 20 19 23 23 N 1.65596 * 104.44822 * 179.97438 * 22 21 20 24 24 O 1.42102 * 110.54289 * 291.62508 * 22 21 20 25 25 O 1.42105 * 110.54112 * 68.37447 * 22 21 20 26 26 N 1.31928 * 120.85228 * 359.97438 * 13 12 11 27 27 H 0.96998 * 119.99921 * 174.92941 * 1 2 3 28 28 H 1.07998 * 120.43541 * 0.02562 * 10 9 7 29 29 H 1.08000 * 120.66754 * 180.25973 * 11 10 9 30 30 H 1.07999 * 120.25122 * 179.74544 * 12 11 10 31 31 H 0.96999 * 120.00037 * 198.78123 * 14 13 12 32 32 H 0.97007 * 120.00028 * 0.02562 * 17 15 14 33 33 H 1.08991 * 109.47171 * 300.00475 * 18 17 15 34 34 H 1.09000 * 109.46633 * 60.00927 * 18 17 15 35 35 H 1.09005 * 109.47382 * 299.99869 * 19 18 17 36 36 H 1.08995 * 109.47549 * 60.00266 * 19 18 17 37 37 H 1.09005 * 109.46549 * 299.99986 * 20 19 18 38 38 H 1.09008 * 109.47229 * 59.99717 * 20 19 18 39 39 H 1.09002 * 109.46632 * 300.00041 * 21 20 19 40 40 H 1.08997 * 109.46640 * 59.99507 * 21 20 19 41 41 H 0.97004 * 119.99546 * 150.00011 * 23 22 21 42 42 H 0.96997 * 120.00426 * 329.99969 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 2.4891 2.0462 1.4001 5 1 3.5391 1.4401 -0.7001 6 1 1.4390 2.6527 -0.6999 7 6 2.0075 -1.2127 -0.0005 8 1 1.4987 -2.1299 -0.2580 9 6 3.3801 -1.2365 0.3360 10 6 4.1222 -2.4176 0.1594 11 6 5.4659 -2.4239 0.4873 12 6 6.0331 -1.2632 0.9919 13 6 5.2416 -0.1236 1.1499 14 7 5.8092 1.0425 1.6569 15 6 7.1471 1.2042 1.6379 16 8 7.8510 0.3819 1.0845 17 7 7.7046 2.2776 2.2323 18 6 9.1590 2.4531 2.2122 19 6 9.5276 3.7406 2.9518 20 6 11.0464 3.9243 2.9303 21 6 11.4151 5.2122 3.6694 22 16 13.2158 5.4295 3.6444 23 7 13.4729 6.8432 4.4675 24 8 13.8488 4.4386 4.4424 25 8 13.6665 5.7057 2.3253 26 7 3.9630 -0.1375 0.8251 27 1 -0.4850 -0.8367 -0.0742 28 1 3.6505 -3.3067 -0.2321 29 1 6.0604 -3.3162 0.3576 30 1 7.0790 -1.2407 1.2602 31 1 5.2418 1.7384 2.0237 32 1 7.1430 2.9336 2.6742 33 1 9.6343 1.6038 2.7029 34 1 9.5031 2.5155 1.1798 35 1 9.0523 4.5902 2.4614 36 1 9.1835 3.6779 3.9842 37 1 11.5220 3.0748 3.4204 38 1 11.3902 3.9872 1.8977 39 1 10.9394 6.0614 3.1788 40 1 11.0712 5.1497 4.7018 41 1 14.2958 6.9722 4.9646 42 1 12.8006 7.5423 4.4526 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001664366039.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:48 Heat of formation + Delta-G solvation = -117.031259 kcal Electronic energy + Delta-G solvation = -26193.455993 eV Core-core repulsion = 22105.653738 eV Total energy + Delta-G solvation = -4087.802255 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.77739 -40.06532 -38.04539 -37.47353 -36.94756 -36.18183 -35.41339 -34.88029 -33.96960 -32.92290 -31.50090 -29.95007 -27.24335 -25.41244 -23.71654 -23.40654 -22.53700 -21.71998 -20.46038 -20.30969 -19.40831 -18.65068 -18.29343 -18.14811 -17.35384 -17.05427 -16.85904 -16.62820 -16.34261 -16.18587 -15.98964 -15.67914 -15.29845 -14.94638 -14.62993 -14.27723 -14.22563 -13.75903 -13.70611 -13.51171 -13.18446 -13.13358 -13.02543 -12.96662 -12.83912 -12.67564 -12.30672 -12.15022 -11.84247 -11.69325 -11.64047 -11.56827 -11.14288 -11.04586 -10.94686 -10.37153 -10.17616 -9.81611 -9.30175 -9.13089 -6.77402 -0.66343 0.61349 0.80388 1.41308 1.53627 1.67830 1.99514 2.03823 2.04417 2.42350 2.66858 2.79295 3.08258 3.44857 3.51573 3.60672 3.91183 4.09086 4.11872 4.20588 4.26885 4.43170 4.65859 4.67237 4.68837 4.72801 4.72888 4.83373 4.92178 5.19550 5.21463 5.32292 5.37108 5.40645 5.43209 5.47284 5.72047 5.80859 5.95187 6.07970 6.41888 6.44040 6.64871 6.89125 7.41335 7.57044 7.94806 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.024465 B = 0.001798 C = 0.001702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.214519 B =15572.917377 C =16451.547259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.020 3.980 3 Si 1.177 2.823 4 H -0.269 1.269 5 H -0.293 1.293 6 H -0.322 1.322 7 C -0.514 4.514 8 H 0.068 0.932 9 C 0.260 3.740 10 C -0.297 4.297 11 C -0.030 4.030 12 C -0.309 4.309 13 C 0.391 3.609 14 N -0.663 5.663 15 C 0.705 3.295 16 O -0.600 6.600 17 N -0.721 5.721 18 C 0.127 3.873 19 C -0.112 4.112 20 C -0.126 4.126 21 C -0.597 4.597 22 S 2.620 3.380 23 N -1.240 6.240 24 O -1.009 7.009 25 O -1.012 7.012 26 N -0.607 5.607 27 H 0.281 0.719 28 H 0.113 0.887 29 H 0.141 0.859 30 H 0.148 0.852 31 H 0.416 0.584 32 H 0.416 0.584 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.167 0.833 40 H 0.167 0.833 41 H 0.424 0.576 42 H 0.428 0.572 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.755 18.346 12.494 31.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C -0.197 4.197 3 Si 1.007 2.993 4 H -0.196 1.196 5 H -0.221 1.221 6 H -0.254 1.254 7 C -0.547 4.547 8 H 0.086 0.914 9 C 0.135 3.865 10 C -0.319 4.319 11 C -0.054 4.054 12 C -0.334 4.334 13 C 0.158 3.842 14 N -0.311 5.311 15 C 0.405 3.595 16 O -0.479 6.479 17 N -0.378 5.378 18 C 0.004 3.996 19 C -0.151 4.151 20 C -0.165 4.165 21 C -0.730 4.730 22 S 2.715 3.285 23 N -0.917 5.917 24 O -0.999 6.999 25 O -1.001 7.001 26 N -0.333 5.333 27 H 0.092 0.908 28 H 0.131 0.869 29 H 0.159 0.841 30 H 0.165 0.835 31 H 0.253 0.747 32 H 0.253 0.747 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.185 0.815 40 H 0.185 0.815 41 H 0.254 0.746 42 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 22.358 19.194 11.734 31.717 hybrid contribution -0.928 -1.944 0.258 2.169 sum 21.430 17.250 11.992 30.011 Atomic orbital electron populations 1.70639 1.08504 1.32876 1.32802 1.28477 0.95489 1.07783 0.87956 0.81699 0.71323 0.68187 0.78079 1.19557 1.22123 1.25412 1.20649 0.94122 0.96783 1.43104 0.91408 1.18353 0.92962 0.87300 0.87918 1.21759 0.95574 0.99630 1.14958 1.21312 0.93785 0.97517 0.92812 1.21868 1.02326 0.92968 1.16189 1.18091 0.88963 0.85574 0.91522 1.42236 1.06452 1.19531 1.62904 1.15910 0.80835 0.83047 0.79681 1.90824 1.61784 1.45151 1.50157 1.44947 1.09098 1.24530 1.59247 1.21443 0.77546 0.99268 1.01381 1.21685 0.94694 0.96202 1.02484 1.21342 0.98055 0.95526 1.01612 1.30253 1.22179 1.07849 1.12748 1.04223 0.78348 0.72986 0.72904 1.52864 1.31906 1.35418 1.71485 1.93565 1.75326 1.60822 1.70197 1.93587 1.80374 1.84304 1.41808 1.66125 1.11244 1.30112 1.25808 0.90790 0.86885 0.84145 0.83502 0.74674 0.74686 0.91915 0.92178 0.88683 0.88612 0.89847 0.89916 0.81475 0.81494 0.74576 0.74265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.34 13.65 21.84 0.30 -45.04 16 2 C 0.02 1.11 5.51 85.29 0.47 1.58 16 3 Si 1.18 55.03 25.93 68.60 1.78 56.81 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.29 -14.22 6.55 99.48 0.65 -13.57 16 6 H -0.32 -14.58 7.11 99.48 0.71 -13.88 16 7 C -0.51 -28.74 9.51 23.47 0.22 -28.51 16 8 H 0.07 3.86 8.06 -2.91 -0.02 3.83 16 9 C 0.26 13.80 6.27 40.20 0.25 14.05 16 10 C -0.30 -14.23 9.83 22.87 0.22 -14.00 16 11 C -0.03 -1.29 10.15 22.40 0.23 -1.06 16 12 C -0.31 -13.66 8.83 22.72 0.20 -13.46 16 13 C 0.39 17.51 7.51 133.24 1.00 18.51 16 14 N -0.66 -22.90 5.42 -322.15 -1.75 -24.64 16 15 C 0.71 21.99 8.40 179.06 1.50 23.50 16 16 O -0.60 -23.40 13.14 -3.97 -0.05 -23.45 16 17 N -0.72 -13.60 5.56 -478.56 -2.66 -16.26 16 18 C 0.13 1.94 5.67 86.38 0.49 2.43 16 19 C -0.11 -0.66 5.33 30.59 0.16 -0.50 16 20 C -0.13 -0.81 5.22 30.60 0.16 -0.65 16 21 C -0.60 -0.52 6.18 71.98 0.44 -0.07 16 22 S 2.62 23.50 5.97 -56.49 -0.34 23.17 16 23 N -1.24 -2.54 9.36 37.02 0.35 -2.19 16 24 O -1.01 -18.34 18.10 -127.65 -2.31 -20.65 16 25 O -1.01 -18.93 18.10 -127.65 -2.31 -21.24 16 26 N -0.61 -30.33 5.07 -186.37 -0.95 -31.27 16 27 H 0.28 15.03 8.73 -92.71 -0.81 14.22 16 28 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 29 H 0.14 4.95 8.06 -2.91 -0.02 4.92 16 30 H 0.15 6.38 5.33 -3.20 -0.02 6.36 16 31 H 0.42 11.90 8.84 -92.71 -0.82 11.08 16 32 H 0.42 4.79 8.49 -92.70 -0.79 4.01 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 0.28 8.14 -2.38 -0.02 0.26 16 36 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 39 H 0.17 -0.81 8.14 -2.39 -0.02 -0.83 16 40 H 0.17 -0.70 8.14 -2.39 -0.02 -0.72 16 41 H 0.42 0.70 8.96 -96.75 -0.87 -0.17 16 42 H 0.43 -1.93 8.96 -96.75 -0.87 -2.80 16 Total: -1.00 -87.54 368.11 -4.91 -92.45 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -2.33 Total: 10.52 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 5.36 Total: 1.80 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -4.71 Total: -119.40 kcal Atomic # 8 Polarization: -60.67 SS G_CDS: -4.67 Total: -65.35 kcal Atomic # 14 Polarization: 55.03 SS G_CDS: 1.78 Total: 56.81 kcal Atomic # 16 Polarization: 23.50 SS G_CDS: -0.34 Total: 23.17 kcal Total: -87.54 -4.91 -92.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001664366039.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.580 kcal (2) G-P(sol) polarization free energy of solvation -87.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds