Wall clock time and date at job start Wed Apr 1 2020 00:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86803 * 119.99740 * 2 1 4 4 H 1.48503 * 109.46910 * 270.00063 * 3 2 1 5 5 H 1.48507 * 109.47209 * 29.99502 * 3 2 1 6 6 H 1.48500 * 109.47264 * 149.99556 * 3 2 1 7 7 C 1.38942 * 120.00532 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99939 * 0.02562 * 7 2 1 9 9 N 1.37096 * 120.00438 * 180.02562 * 7 2 1 10 10 C 1.34769 * 120.00262 * 180.02562 * 9 7 2 11 11 O 1.21293 * 120.00636 * 0.02562 * 10 9 7 12 12 C 1.50710 * 120.00213 * 180.02562 * 10 9 7 13 13 N 1.46900 * 109.47111 * 180.02562 * 12 10 9 14 14 C 1.46903 * 110.99639 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.46992 * 179.97438 * 14 13 12 16 16 N 1.46499 * 109.47310 * 179.97438 * 15 14 13 17 17 C 1.46495 * 120.00032 * 270.00349 * 16 15 14 18 18 C 1.52993 * 109.47319 * 262.48321 * 17 16 15 19 19 O 1.42900 * 109.47202 * 64.99998 * 18 17 16 20 20 C 1.34773 * 119.99911 * 89.99910 * 16 15 14 21 21 O 1.21687 * 120.00079 * 2.38586 * 20 16 15 22 22 C 1.46680 * 120.00325 * 182.38365 * 20 16 15 23 23 C 1.35663 * 126.13292 * 172.40553 * 22 20 16 24 24 N 1.30942 * 114.19104 * 180.02562 * 23 22 20 25 25 C 1.29435 * 117.36668 * 0.02562 * 24 23 22 26 26 S 1.70958 * 110.38689 * 359.97438 * 25 24 23 27 27 H 0.96993 * 120.00238 * 0.02562 * 1 2 3 28 28 H 0.97003 * 119.99544 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.46704 * 59.99708 * 12 10 9 30 30 H 1.09000 * 109.46805 * 300.00050 * 12 10 9 31 31 H 1.00899 * 110.99974 * 303.94780 * 13 12 10 32 32 H 1.08998 * 109.47038 * 60.00139 * 14 13 12 33 33 H 1.09000 * 109.47313 * 300.00088 * 14 13 12 34 34 H 1.09007 * 109.46654 * 60.00152 * 15 14 13 35 35 H 1.09000 * 109.47486 * 300.00377 * 15 14 13 36 36 H 1.09003 * 109.47493 * 22.49048 * 17 16 15 37 37 H 1.09010 * 109.46931 * 142.48394 * 17 16 15 38 38 H 1.08997 * 109.47649 * 184.99970 * 18 17 16 39 39 H 1.09005 * 109.47218 * 305.00247 * 18 17 16 40 40 H 0.96695 * 114.00320 * 180.02562 * 19 18 17 41 41 H 1.07997 * 122.90453 * 0.06211 * 23 22 20 42 42 H 1.07991 * 124.80559 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4001 5 1 1.4454 2.6528 0.7000 6 1 3.5456 1.4404 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 1.4690 -2.1385 0.0005 9 7 3.3799 -1.2032 0.0011 10 6 4.0538 -2.3703 0.0011 11 8 3.4475 -3.4208 0.0001 12 6 5.5609 -2.3702 0.0022 13 7 6.0506 -3.7552 0.0014 14 6 7.5191 -3.7943 0.0031 15 6 7.9906 -5.2498 0.0028 16 7 9.4550 -5.2889 0.0039 17 6 10.1882 -5.3077 -1.2643 18 6 10.5686 -6.7482 -1.6121 19 8 9.3831 -7.5099 -1.8495 20 6 10.1277 -5.3073 1.1716 21 8 9.5183 -5.3355 2.2245 22 6 11.5945 -5.2936 1.1733 23 6 12.3919 -5.1644 2.2632 24 7 13.6736 -5.1819 1.9954 25 6 14.0206 -5.3163 0.7557 26 16 12.6365 -5.4408 -0.2400 27 1 -0.4850 0.8400 -0.0004 28 1 3.8648 -0.3631 0.0007 29 1 5.9235 -1.8567 0.8927 30 1 5.9249 -1.8560 -0.8872 31 1 5.6746 -4.2722 0.7820 32 1 7.8949 -3.2913 0.8941 33 1 7.8971 -3.2894 -0.8859 34 1 7.6147 -5.7532 -0.8880 35 1 7.6126 -5.7544 0.8920 36 1 9.5589 -4.8973 -2.0540 37 1 11.0922 -4.7058 -1.1703 38 1 11.1896 -6.7539 -2.5079 39 1 11.1230 -7.1879 -0.7829 40 1 9.5489 -8.4353 -2.0756 41 1 12.0033 -5.0570 3.2651 42 1 15.0401 -5.3465 0.4008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672589357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:45:14 Heat of formation + Delta-G solvation = -80.510400 kcal Electronic energy + Delta-G solvation = -26772.444496 eV Core-core repulsion = 22686.225904 eV Total energy + Delta-G solvation = -4086.218592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.47941 -40.42924 -40.25982 -38.22259 -37.30831 -36.17778 -35.75590 -33.76763 -32.51723 -31.03197 -29.86206 -28.02393 -26.81377 -25.44583 -24.36208 -23.61874 -21.98569 -21.30424 -20.68467 -20.30028 -19.48534 -18.51963 -17.98548 -17.83269 -17.50382 -17.09068 -16.76073 -16.69829 -16.16357 -15.71345 -15.63041 -15.32045 -15.19947 -14.98519 -14.86383 -14.78267 -14.67882 -14.29401 -13.96952 -13.89784 -13.86105 -13.42134 -13.00966 -12.84568 -12.57800 -12.54618 -12.42179 -12.09110 -11.98679 -11.52495 -11.37940 -11.10766 -10.56003 -10.51171 -10.49250 -10.26157 -10.05495 -9.78844 -9.45186 -8.41984 -6.03202 -0.81435 0.14648 0.56703 1.29929 1.35137 1.36399 1.44167 1.66158 1.93089 2.03074 2.22497 2.73249 3.13624 3.17441 3.23177 3.42633 3.49032 3.88191 4.00313 4.06953 4.12281 4.15259 4.17381 4.31502 4.33633 4.40792 4.47353 4.52521 4.55255 4.69072 4.79624 4.93278 4.98912 5.27059 5.51443 5.84947 5.97885 6.09801 6.23756 6.58190 6.58858 6.85346 6.86483 6.90843 7.37764 7.94037 8.75624 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.019620 B = 0.002033 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.766900 B =13769.179842 C =14407.095207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.016 4.016 3 Si 0.966 3.034 4 H -0.254 1.254 5 H -0.275 1.275 6 H -0.233 1.233 7 C -0.330 4.330 8 H 0.055 0.945 9 N -0.590 5.590 10 C 0.448 3.552 11 O -0.613 6.613 12 C 0.063 3.937 13 N -0.679 5.679 14 C 0.055 3.945 15 C 0.131 3.869 16 N -0.591 5.591 17 C 0.085 3.915 18 C 0.050 3.950 19 O -0.587 6.587 20 C 0.588 3.412 21 O -0.570 6.570 22 C -0.328 4.328 23 C 0.113 3.887 24 N -0.512 5.512 25 C 0.006 3.994 26 S 0.274 5.726 27 H 0.280 0.720 28 H 0.390 0.610 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.343 0.657 32 H 0.024 0.976 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.062 0.938 36 H 0.121 0.879 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.048 0.952 40 H 0.398 0.602 41 H 0.175 0.825 42 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.491 -9.123 -6.942 39.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.215 4.215 3 Si 0.786 3.214 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.157 1.157 7 C -0.459 4.459 8 H 0.073 0.927 9 N -0.231 5.231 10 C 0.236 3.764 11 O -0.498 6.498 12 C -0.069 4.069 13 N -0.311 5.311 14 C -0.075 4.075 15 C 0.008 3.992 16 N -0.321 5.321 17 C -0.039 4.039 18 C -0.029 4.029 19 O -0.396 6.396 20 C 0.376 3.624 21 O -0.451 6.451 22 C -0.452 4.452 23 C -0.046 4.046 24 N -0.226 5.226 25 C -0.287 4.287 26 S 0.531 5.469 27 H 0.089 0.911 28 H 0.226 0.774 29 H 0.089 0.911 30 H 0.139 0.861 31 H 0.161 0.839 32 H 0.042 0.958 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.139 0.861 37 H 0.126 0.874 38 H 0.120 0.880 39 H 0.066 0.934 40 H 0.248 0.752 41 H 0.192 0.808 42 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 36.604 -9.322 -7.675 38.544 hybrid contribution -0.332 0.664 2.116 2.243 sum 36.272 -8.659 -5.559 37.703 Atomic orbital electron populations 1.69802 1.08122 1.29290 1.50181 1.26139 0.96517 1.02779 0.96036 0.85347 0.79371 0.76627 0.80050 1.17866 1.19998 1.15666 1.19011 0.81449 0.94985 1.50430 0.92662 1.42014 1.05859 1.07551 1.67719 1.20917 0.90862 0.83374 0.81236 1.90548 1.71354 1.32782 1.55090 1.21633 0.89741 0.91502 1.04037 1.60030 1.07435 1.12295 1.51365 1.22279 0.86658 0.97254 1.01322 1.21251 0.77851 0.96058 1.03999 1.47655 1.06899 1.71859 1.05725 1.22431 0.98152 0.97482 0.85828 1.22972 0.87649 0.90923 1.01376 1.86502 1.32345 1.27711 1.93002 1.17202 0.85504 0.75952 0.83751 1.90842 1.69676 1.52132 1.32401 1.25680 0.97983 1.21697 0.99881 1.22244 0.87000 0.95043 1.00301 1.66436 1.16937 1.17971 1.21237 1.30012 1.08564 0.97853 0.92230 1.83947 0.93744 1.62710 1.06535 0.91098 0.77429 0.91100 0.86145 0.83864 0.95765 0.88786 0.87961 0.91947 0.86112 0.87361 0.88041 0.93377 0.75212 0.80832 0.74652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.95 13.96 21.66 0.30 -56.64 16 2 C -0.02 -0.91 5.50 84.92 0.47 -0.44 16 3 Si 0.97 39.27 27.74 68.60 1.90 41.17 16 4 H -0.25 -9.71 7.11 99.48 0.71 -9.00 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.23 -8.04 6.52 99.48 0.65 -7.40 16 7 C -0.33 -19.67 10.16 84.04 0.85 -18.82 16 8 H 0.06 3.92 7.39 -2.91 -0.02 3.90 16 9 N -0.59 -28.47 5.09 -306.99 -1.56 -30.03 16 10 C 0.45 20.89 7.82 87.66 0.69 21.58 16 11 O -0.61 -35.04 15.78 -3.07 -0.05 -35.09 16 12 C 0.06 2.03 6.17 85.56 0.53 2.56 16 13 N -0.68 -21.30 6.13 -517.91 -3.17 -24.48 16 14 C 0.05 1.30 6.01 86.30 0.52 1.82 16 15 C 0.13 3.02 5.65 86.38 0.49 3.51 16 16 N -0.59 -10.98 2.44 -826.54 -2.02 -13.00 16 17 C 0.08 0.83 5.34 86.38 0.46 1.29 16 18 C 0.05 0.35 5.95 71.98 0.43 0.77 16 19 O -0.59 -6.91 13.40 -148.98 -2.00 -8.90 16 20 C 0.59 13.58 7.56 86.45 0.65 14.24 16 21 O -0.57 -18.35 16.44 -4.31 -0.07 -18.42 16 22 C -0.33 -5.56 6.08 23.88 0.15 -5.41 16 23 C 0.11 2.10 11.10 84.23 0.93 3.04 16 24 N -0.51 -8.21 10.51 -202.57 -2.13 -10.34 16 25 C 0.01 0.04 12.22 130.60 1.60 1.64 16 26 S 0.27 1.60 15.76 -56.49 -0.89 0.71 16 27 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 28 H 0.39 15.54 5.76 -92.71 -0.53 15.01 16 29 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 31 H 0.34 11.95 8.43 -89.69 -0.76 11.20 16 32 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.10 2.32 7.87 -2.38 -0.02 2.30 16 35 H 0.06 1.75 7.39 -2.39 -0.02 1.74 16 36 H 0.12 1.01 8.02 -2.39 -0.02 0.99 16 37 H 0.11 0.63 4.45 -21.08 -0.09 0.53 16 38 H 0.10 0.00 8.14 -2.39 -0.02 -0.02 16 39 H 0.05 0.37 6.29 -2.74 -0.02 0.35 16 40 H 0.40 1.49 9.12 -74.06 -0.68 0.81 16 41 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 42 H 0.24 -0.20 8.06 -2.92 -0.02 -0.23 16 Total: -1.00 -90.87 367.38 -2.93 -93.79 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: -1.01 Total: 35.46 kcal Atomic # 6 Polarization: 18.01 SS G_CDS: 7.76 Total: 25.77 kcal Atomic # 7 Polarization: -125.91 SS G_CDS: -8.58 Total: -134.49 kcal Atomic # 8 Polarization: -60.30 SS G_CDS: -2.12 Total: -62.41 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 1.90 Total: 41.17 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -0.89 Total: 0.71 kcal Total: -90.87 -2.93 -93.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672589357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.283 kcal (2) G-P(sol) polarization free energy of solvation -90.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds