Wall clock time and date at job start Wed Apr 1 2020 00:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86806 * 120.00217 * 2 1 4 4 H 1.48501 * 109.47143 * 269.99888 * 3 2 1 5 5 H 1.48494 * 109.46725 * 30.00272 * 3 2 1 6 6 H 1.48506 * 109.46864 * 150.00023 * 3 2 1 7 7 C 1.38951 * 119.99889 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00275 * 179.97438 * 7 2 1 9 9 N 1.37101 * 120.00073 * 0.02562 * 7 2 1 10 10 C 1.34775 * 119.99919 * 180.02562 * 9 7 2 11 11 O 1.21290 * 120.00558 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99738 * 180.02562 * 10 9 7 13 13 N 1.46898 * 109.47385 * 179.97438 * 12 10 9 14 14 C 1.46898 * 111.00578 * 180.02562 * 13 12 10 15 15 C 1.52998 * 109.47265 * 180.02562 * 14 13 12 16 16 N 1.46498 * 109.46849 * 179.97438 * 15 14 13 17 17 C 1.46504 * 119.99778 * 269.99436 * 16 15 14 18 18 C 1.52997 * 109.47228 * 262.76527 * 17 16 15 19 19 O 1.42899 * 109.46943 * 65.00100 * 18 17 16 20 20 C 1.34777 * 120.00400 * 89.99770 * 16 15 14 21 21 O 1.21630 * 119.99755 * 2.71823 * 20 16 15 22 22 C 1.47107 * 120.00183 * 182.71816 * 20 16 15 23 23 C 1.38377 * 127.99516 * 172.74922 * 22 20 16 24 24 C 1.37580 * 111.26516 * 180.26487 * 23 22 20 25 25 N 1.29552 * 117.94441 * 359.97438 * 24 23 22 26 26 S 1.56307 * 110.38401 * 0.02562 * 25 24 23 27 27 H 0.96999 * 119.99432 * 0.02562 * 1 2 3 28 28 H 0.96996 * 119.99854 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.47439 * 59.99501 * 12 10 9 30 30 H 1.09000 * 109.46929 * 299.99891 * 12 10 9 31 31 H 1.00907 * 110.99442 * 303.95831 * 13 12 10 32 32 H 1.08992 * 109.46970 * 59.99702 * 14 13 12 33 33 H 1.09008 * 109.46511 * 299.99981 * 14 13 12 34 34 H 1.09001 * 109.47420 * 59.99597 * 15 14 13 35 35 H 1.09003 * 109.46683 * 299.99351 * 15 14 13 36 36 H 1.08997 * 109.46848 * 22.76500 * 17 16 15 37 37 H 1.08997 * 109.46934 * 142.76769 * 17 16 15 38 38 H 1.08993 * 109.47098 * 185.00150 * 18 17 16 39 39 H 1.09002 * 109.46971 * 305.00331 * 18 17 16 40 40 H 0.96707 * 113.99803 * 180.02562 * 19 18 17 41 41 H 1.08005 * 124.37260 * 0.24202 * 23 22 20 42 42 H 1.07993 * 121.02929 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7001 6 1 3.5458 1.4401 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5580 -0.0011 12 6 1.2437 -4.8629 -0.0034 13 7 2.1981 -5.9796 -0.0036 14 6 1.4979 -7.2709 -0.0059 15 6 2.5228 -8.4069 -0.0055 16 7 1.8243 -9.6946 -0.0072 17 6 1.4737 -10.3394 1.2608 18 6 2.5346 -11.3843 1.6121 19 8 3.7837 -10.7329 1.8519 20 6 1.5043 -10.2863 -1.1751 21 8 1.8389 -9.7757 -2.2271 22 6 0.7504 -11.5495 -1.1775 23 6 0.2193 -12.2224 -2.2637 24 6 -0.4266 -13.3721 -1.8713 25 7 -0.4489 -13.6546 -0.6071 26 16 0.3065 -12.5565 0.2095 27 1 -0.4849 0.8401 -0.0004 28 1 0.3534 -2.3907 -0.0016 29 1 0.6179 -4.9201 -0.8941 30 1 0.6160 -4.9212 0.8859 31 1 2.8337 -5.9117 -0.7845 32 1 0.8740 -7.3442 -0.8966 33 1 0.8720 -7.3463 0.8834 34 1 3.1464 -8.3333 0.8855 35 1 3.1489 -8.3316 -0.8945 36 1 1.4280 -9.5887 2.0497 37 1 0.5028 -10.8254 1.1649 38 1 2.2292 -11.9254 2.5076 39 1 2.6432 -12.0845 0.7838 40 1 4.5043 -11.3360 2.0803 41 1 0.3008 -11.8882 -3.2875 42 1 -0.8997 -14.0194 -2.5947 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672624264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:47 Heat of formation + Delta-G solvation = -88.651984 kcal Electronic energy + Delta-G solvation = -26684.209301 eV Core-core repulsion = 22597.637664 eV Total energy + Delta-G solvation = -4086.571637 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.32060 -40.18987 -40.04136 -38.19053 -37.27817 -36.14530 -35.70857 -33.30511 -32.93566 -31.33464 -29.84579 -28.07572 -26.82155 -25.51555 -24.33198 -23.64394 -22.17349 -21.11252 -20.45754 -19.93652 -19.52792 -18.36905 -18.04875 -17.87531 -17.39997 -17.07367 -16.72636 -16.52977 -16.17761 -15.83232 -15.63601 -15.46183 -15.24558 -14.93110 -14.84511 -14.66848 -14.36814 -13.99080 -13.86726 -13.76526 -13.51644 -13.32471 -12.95933 -12.80249 -12.54285 -12.42560 -12.41363 -12.11551 -12.06709 -11.55647 -11.51098 -11.23704 -10.97842 -10.82206 -10.39974 -10.02302 -9.90421 -9.71003 -9.43108 -8.46835 -5.95729 -0.81540 0.16610 0.87081 1.17826 1.38381 1.42074 1.55113 1.64697 1.91121 2.03859 2.29735 2.93739 3.20067 3.21386 3.24760 3.54254 3.88020 3.95077 4.01921 4.06657 4.12031 4.17376 4.28825 4.33391 4.46595 4.49662 4.52889 4.58386 4.64360 4.72272 4.83226 4.86558 4.94975 5.27877 5.41017 5.50361 5.82923 6.05640 6.11550 6.28029 6.59327 6.85037 6.91892 7.11956 7.54993 8.10224 8.70610 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.022685 B = 0.001898 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.013401 B =14745.668653 C =15313.352477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.995 3.005 4 H -0.271 1.271 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.334 4.334 8 H 0.079 0.921 9 N -0.572 5.572 10 C 0.438 3.562 11 O -0.622 6.622 12 C 0.066 3.934 13 N -0.675 5.675 14 C 0.053 3.947 15 C 0.132 3.868 16 N -0.589 5.589 17 C 0.087 3.913 18 C 0.050 3.950 19 O -0.585 6.585 20 C 0.589 3.411 21 O -0.565 6.565 22 C -0.301 4.301 23 C -0.106 4.106 24 C 0.064 3.936 25 N -0.565 5.565 26 S 0.477 5.523 27 H 0.278 0.722 28 H 0.397 0.603 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.344 0.656 32 H 0.023 0.977 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.123 0.877 37 H 0.103 0.897 38 H 0.100 0.900 39 H 0.045 0.955 40 H 0.398 0.602 41 H 0.181 0.819 42 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.426 -31.185 3.217 31.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.214 4.214 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.197 1.197 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.508 6.508 12 C -0.066 4.066 13 N -0.307 5.307 14 C -0.077 4.077 15 C 0.010 3.990 16 N -0.320 5.320 17 C -0.038 4.038 18 C -0.029 4.029 19 O -0.393 6.393 20 C 0.377 3.623 21 O -0.445 6.445 22 C -0.434 4.434 23 C -0.142 4.142 24 C -0.127 4.127 25 N -0.393 5.393 26 S 0.635 5.365 27 H 0.087 0.913 28 H 0.231 0.769 29 H 0.079 0.921 30 H 0.128 0.872 31 H 0.162 0.838 32 H 0.041 0.959 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.084 0.916 36 H 0.141 0.859 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.063 0.937 40 H 0.248 0.752 41 H 0.198 0.802 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.143 -31.095 5.250 31.691 hybrid contribution -0.143 0.873 -2.918 3.049 sum -3.285 -30.221 2.332 30.489 Atomic orbital electron populations 1.69675 1.06838 1.29327 1.50278 1.26072 0.96590 1.02483 0.96245 0.84906 0.77898 0.76758 0.78638 1.19672 1.19445 1.19719 1.19680 0.92740 0.83988 1.49952 0.90270 1.41924 1.09351 1.04698 1.65002 1.20811 0.88248 0.86113 0.82306 1.90492 1.15807 1.87932 1.56613 1.21532 0.93930 0.88021 1.03134 1.60024 1.18900 1.00581 1.51220 1.22291 0.96189 0.88039 1.01164 1.21264 0.93659 0.79882 1.04239 1.47663 1.57302 1.21322 1.05692 1.22376 0.97198 0.98264 0.85962 1.22906 0.84990 0.93725 1.01274 1.86499 1.20543 1.39374 1.92893 1.17180 0.78625 0.82772 0.83717 1.90825 1.55469 1.65799 1.32376 1.26792 1.10985 1.02829 1.02763 1.22381 0.96352 0.94033 1.01466 1.22541 1.00846 0.97460 0.91837 1.72074 1.24523 1.30489 1.12256 1.81755 1.39333 1.04352 1.11109 0.91270 0.76941 0.92056 0.87221 0.83824 0.95904 0.89107 0.87749 0.91615 0.85932 0.88046 0.88208 0.93663 0.75185 0.80214 0.77605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.19 13.05 21.66 0.28 -49.91 16 2 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 3 Si 0.99 43.44 29.55 68.60 2.03 45.47 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 7 C -0.33 -19.30 9.68 84.04 0.81 -18.48 16 8 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 9 N -0.57 -30.01 5.29 -306.98 -1.62 -31.63 16 10 C 0.44 21.42 7.82 87.66 0.69 22.11 16 11 O -0.62 -35.37 15.78 -3.06 -0.05 -35.41 16 12 C 0.07 2.36 6.17 85.56 0.53 2.89 16 13 N -0.67 -22.41 6.13 -517.94 -3.17 -25.58 16 14 C 0.05 1.35 6.01 86.30 0.52 1.87 16 15 C 0.13 3.13 5.65 86.38 0.49 3.62 16 16 N -0.59 -11.42 2.44 -826.07 -2.01 -13.43 16 17 C 0.09 0.99 5.35 86.38 0.46 1.45 16 18 C 0.05 0.43 6.06 71.98 0.44 0.87 16 19 O -0.58 -7.31 13.37 -148.98 -1.99 -9.30 16 20 C 0.59 13.70 7.59 86.57 0.66 14.36 16 21 O -0.56 -17.95 16.53 -4.13 -0.07 -18.02 16 22 C -0.30 -5.15 6.26 24.63 0.15 -5.00 16 23 C -0.11 -1.55 10.41 22.15 0.23 -1.32 16 24 C 0.06 0.77 11.15 84.87 0.95 1.72 16 25 N -0.56 -8.16 11.29 -85.47 -0.96 -9.13 16 26 S 0.48 5.29 16.57 -56.49 -0.94 4.35 16 27 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 28 H 0.40 19.68 7.90 -92.71 -0.73 18.95 16 29 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.11 3.42 8.14 -2.39 -0.02 3.40 16 31 H 0.34 12.36 8.43 -89.69 -0.76 11.60 16 32 H 0.02 0.62 8.14 -2.39 -0.02 0.61 16 33 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 34 H 0.10 2.42 7.84 -2.39 -0.02 2.40 16 35 H 0.07 1.85 7.39 -2.39 -0.02 1.83 16 36 H 0.12 1.19 8.02 -2.39 -0.02 1.17 16 37 H 0.10 0.83 4.48 -20.11 -0.09 0.74 16 38 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.05 0.42 6.46 -2.39 -0.02 0.40 16 40 H 0.40 1.75 9.12 -74.05 -0.68 1.07 16 41 H 0.18 2.36 8.06 -2.91 -0.02 2.34 16 42 H 0.21 1.16 8.06 -2.91 -0.02 1.13 16 Total: -1.00 -79.98 370.87 -3.26 -83.24 By element: Atomic # 1 Polarization: 36.70 SS G_CDS: -1.14 Total: 35.56 kcal Atomic # 6 Polarization: 17.40 SS G_CDS: 6.39 Total: 23.78 kcal Atomic # 7 Polarization: -122.18 SS G_CDS: -7.49 Total: -129.67 kcal Atomic # 8 Polarization: -60.63 SS G_CDS: -2.11 Total: -62.73 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 5.29 SS G_CDS: -0.94 Total: 4.35 kcal Total: -79.98 -3.26 -83.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672624264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.408 kcal (2) G-P(sol) polarization free energy of solvation -79.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds