Wall clock time and date at job start Wed Apr 1 2020 01:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29432 * 124.80284 * 2 1 4 4 C 1.30944 * 117.36198 * 179.97438 * 3 2 1 5 5 C 1.35667 * 114.19307 * 359.97438 * 4 3 2 6 6 C 1.46674 * 126.13118 * 180.02562 * 5 4 3 7 7 O 1.21693 * 120.00028 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00184 * 180.02562 * 6 5 4 9 9 C 1.46499 * 120.00187 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.46851 * 179.97438 * 9 8 6 11 11 H 1.08993 * 109.47416 * 294.99799 * 10 9 8 12 12 C 1.53001 * 109.46848 * 174.99855 * 10 9 8 13 13 O 1.42897 * 109.47472 * 305.00379 * 12 10 9 14 14 N 1.46901 * 109.47245 * 55.00305 * 10 9 8 15 15 C 1.46895 * 110.99816 * 204.99659 * 14 10 9 16 16 C 1.50706 * 109.47182 * 179.97438 * 15 14 10 17 17 O 1.21297 * 119.99667 * 0.02562 * 16 15 14 18 18 N 1.34773 * 120.00081 * 179.72734 * 16 15 14 19 19 C 1.37095 * 119.99878 * 180.02562 * 18 16 15 20 20 H 1.08004 * 120.00160 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00380 * 179.97438 * 19 18 16 22 22 N 1.31404 * 120.00261 * 179.97438 * 21 19 18 23 23 Si 1.86801 * 119.99599 * 0.02562 * 21 19 18 24 24 H 1.48494 * 109.47644 * 89.99834 * 23 21 19 25 25 H 1.48506 * 109.47143 * 209.99780 * 23 21 19 26 26 H 1.48501 * 109.47120 * 329.99495 * 23 21 19 27 27 S 1.70949 * 124.80471 * 180.30817 * 2 1 3 28 28 H 1.08994 * 109.46904 * 90.02716 * 1 2 3 29 29 H 1.08996 * 109.47054 * 210.02797 * 1 2 3 30 30 H 1.08999 * 109.46931 * 330.02657 * 1 2 3 31 31 H 1.07996 * 122.90393 * 180.02562 * 4 3 2 32 32 H 0.97002 * 119.99552 * 359.97438 * 8 6 5 33 33 H 1.08997 * 109.47243 * 60.00001 * 9 8 6 34 34 H 1.08999 * 109.46836 * 299.99904 * 9 8 6 35 35 H 1.09005 * 109.46975 * 65.00179 * 12 10 9 36 36 H 1.08997 * 109.47675 * 185.00010 * 12 10 9 37 37 H 0.96703 * 114.00471 * 180.02562 * 13 12 10 38 38 H 1.00902 * 110.99849 * 328.95038 * 14 10 9 39 39 H 1.09001 * 109.47613 * 60.00104 * 15 14 10 40 40 H 1.08998 * 109.47678 * 300.00000 * 15 14 10 41 41 H 0.96998 * 120.00525 * 359.97438 * 18 16 15 42 42 H 0.97009 * 120.00065 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2458 1.0628 0.0000 4 6 3.5442 0.8932 0.0005 5 6 3.9352 -0.4059 0.0015 6 6 5.3189 -0.8926 0.0028 7 8 6.2426 -0.1003 0.0026 8 7 5.5673 -2.2173 0.0033 9 6 6.9493 -2.7034 0.0051 10 6 6.9517 -4.2334 0.0059 11 1 6.5170 -4.5970 0.9369 12 6 8.3897 -4.7411 -0.1179 13 8 8.9980 -4.1709 -1.2784 14 7 6.1595 -4.7249 -1.1294 15 6 5.6396 -6.0729 -0.8641 16 6 4.8335 -6.5424 -2.0477 17 8 4.7052 -5.8247 -3.0172 18 7 4.2602 -7.7620 -2.0316 19 6 3.5274 -8.1892 -3.1086 20 1 3.4091 -7.5483 -3.9698 21 6 2.9367 -9.4468 -3.0922 22 7 2.2339 -9.8561 -4.1243 23 14 3.1406 -10.5551 -1.6024 24 1 2.0391 -10.2986 -0.6401 25 1 3.1009 -11.9757 -2.0331 26 1 4.4441 -10.2720 -0.9496 27 16 2.4828 -1.4036 -0.0075 28 1 -0.3633 -0.0005 -1.0276 29 1 -0.3633 -0.8897 0.5142 30 1 -0.3633 0.8902 0.5134 31 1 4.2434 1.7163 0.0010 32 1 4.8310 -2.8488 0.0031 33 1 7.4614 -2.3392 0.8957 34 1 7.4637 -2.3393 -0.8842 35 1 8.9549 -4.4514 0.7680 36 1 8.3851 -5.8274 -0.2068 37 1 9.9130 -4.4498 -1.4203 38 1 5.4109 -4.0858 -1.3515 39 1 5.0043 -6.0496 0.0214 40 1 6.4715 -6.7568 -0.6964 41 1 4.3667 -8.3378 -1.2583 42 1 1.8212 -10.7340 -4.1127 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001676510234.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:30:50 Heat of formation + Delta-G solvation = -61.754576 kcal Electronic energy + Delta-G solvation = -26899.883256 eV Core-core repulsion = 22814.477978 eV Total energy + Delta-G solvation = -4085.405278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.46389 -39.55594 -38.65198 -37.65383 -35.67941 -34.25370 -33.75170 -32.64042 -31.71923 -30.53382 -29.01320 -26.55716 -26.10422 -24.47297 -23.80489 -21.99083 -20.77526 -19.92242 -19.43573 -18.74339 -18.44397 -17.58994 -17.31539 -16.38804 -16.05785 -15.81313 -15.56338 -15.20128 -14.98505 -14.88999 -14.51016 -14.35650 -14.03023 -13.78635 -13.72710 -13.63546 -13.14456 -12.94388 -12.77206 -12.68204 -12.43534 -12.25995 -11.89040 -11.78969 -11.76128 -11.22937 -11.14938 -10.64574 -10.48290 -10.04251 -10.01917 -9.99484 -9.83131 -9.62239 -9.38438 -9.16749 -8.64997 -8.28337 -8.21723 -6.35350 -3.87049 -0.06532 0.84554 1.25998 2.16390 2.77529 2.95271 2.97670 3.01422 3.10780 3.66982 3.74486 3.87058 4.05555 4.18912 4.46067 4.58830 4.62541 4.68223 4.94753 4.98353 5.04127 5.08602 5.13843 5.17490 5.24855 5.42671 5.46885 5.49384 5.51646 5.69259 5.78418 5.82955 5.92708 6.06351 6.93998 7.04711 7.30054 7.38129 7.53081 7.66156 7.83317 8.09663 8.54791 8.90502 9.37398 9.77207 10.77681 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.008971 B = 0.003166 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3120.355721 B = 8840.588419 C =11365.805533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.061 3.939 3 N -0.482 5.482 4 C 0.124 3.876 5 C -0.300 4.300 6 C 0.602 3.398 7 O -0.524 6.524 8 N -0.726 5.726 9 C 0.123 3.877 10 C 0.075 3.925 11 H 0.062 0.938 12 C 0.092 3.908 13 O -0.553 6.553 14 N -0.653 5.653 15 C 0.044 3.956 16 C 0.449 3.551 17 O -0.560 6.560 18 N -0.589 5.589 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.880 5.880 23 Si 0.880 3.120 24 H -0.271 1.271 25 H -0.276 1.276 26 H -0.270 1.270 27 S 0.176 5.824 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.189 0.811 32 H 0.396 0.604 33 H 0.076 0.924 34 H 0.096 0.904 35 H 0.046 0.954 36 H 0.052 0.948 37 H 0.374 0.626 38 H 0.349 0.651 39 H 0.045 0.955 40 H 0.088 0.912 41 H 0.370 0.630 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.413 13.572 15.996 21.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.213 4.213 3 N -0.197 5.197 4 C -0.034 4.034 5 C -0.424 4.424 6 C 0.387 3.613 7 O -0.402 6.402 8 N -0.379 5.379 9 C -0.001 4.001 10 C -0.036 4.036 11 H 0.079 0.921 12 C 0.013 3.987 13 O -0.357 6.357 14 N -0.288 5.288 15 C -0.089 4.089 16 C 0.234 3.766 17 O -0.442 6.442 18 N -0.229 5.229 19 C -0.434 4.434 20 H 0.137 0.863 21 C -0.161 4.161 22 N -0.520 5.520 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 S 0.433 5.567 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.205 0.795 32 H 0.231 0.769 33 H 0.094 0.906 34 H 0.114 0.886 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.220 0.780 38 H 0.171 0.829 39 H 0.063 0.937 40 H 0.107 0.893 41 H 0.203 0.797 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.294 13.912 14.807 20.582 hybrid contribution 0.170 -0.934 1.788 2.024 sum 3.464 12.978 16.595 21.350 Atomic orbital electron populations 1.20573 0.84508 1.04696 1.04625 1.27549 1.02401 0.91039 1.00316 1.66256 1.04749 1.31139 1.17538 1.22181 0.90773 0.95446 0.95005 1.25744 0.97951 0.98064 1.20685 1.16618 0.86069 0.82292 0.76325 1.90847 1.44335 1.55062 1.49932 1.45944 1.09690 1.06501 1.75723 1.21552 0.81701 0.92671 1.04132 1.21914 0.94879 0.93576 0.93230 0.92057 1.22051 0.91909 0.97063 0.87714 1.86611 1.30910 1.72119 1.46081 1.60004 1.28901 1.02895 1.37047 1.21844 0.98509 0.91970 0.96551 1.19635 0.84370 0.83319 0.89278 1.90591 1.63179 1.55257 1.35163 1.42194 1.47787 1.14908 1.18013 1.19432 1.25889 1.01296 0.96796 0.86256 1.25038 0.96818 0.96951 0.97316 1.69620 1.32931 1.20218 1.29225 0.86675 0.78543 0.81346 0.82814 1.19661 1.20159 1.19527 1.84175 0.96335 1.11056 1.65183 0.88795 0.89549 0.88814 0.79462 0.76924 0.90570 0.88609 0.93549 0.93014 0.77981 0.82914 0.93745 0.89335 0.79740 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.46 36.01 0.38 -0.14 16 2 C 0.06 0.59 7.39 -13.29 -0.10 0.49 16 3 N -0.48 -5.53 10.51 -11.50 -0.12 -5.65 16 4 C 0.12 1.44 11.09 -18.85 -0.21 1.23 16 5 C -0.30 -3.56 6.48 -37.10 -0.24 -3.80 16 6 C 0.60 8.00 7.79 -12.85 -0.10 7.90 16 7 O -0.52 -8.39 16.87 5.20 0.09 -8.30 16 8 N -0.73 -8.48 4.98 -61.62 -0.31 -8.78 16 9 C 0.12 1.41 5.20 -4.04 -0.02 1.39 16 10 C 0.07 0.82 2.60 -67.71 -0.18 0.64 16 11 H 0.06 0.55 7.80 -51.93 -0.40 0.14 16 12 C 0.09 0.90 6.80 37.16 0.25 1.16 16 13 O -0.55 -6.41 12.64 -35.23 -0.45 -6.86 16 14 N -0.65 -9.70 5.87 -107.99 -0.63 -10.33 16 15 C 0.04 0.67 5.96 -4.98 -0.03 0.64 16 16 C 0.45 9.78 7.82 -10.98 -0.09 9.70 16 17 O -0.56 -14.75 15.78 5.54 0.09 -14.67 16 18 N -0.59 -13.50 5.09 -10.96 -0.06 -13.55 16 19 C -0.31 -8.43 10.16 -14.93 -0.15 -8.59 16 20 H 0.12 3.80 7.39 -52.48 -0.39 3.41 16 21 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 22 N -0.88 -25.24 13.96 55.50 0.77 -24.46 16 23 Si 0.88 18.74 27.74 -169.99 -4.71 14.02 16 24 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 25 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.27 -5.20 6.52 56.52 0.37 -4.83 16 27 S 0.18 1.72 22.31 -107.50 -2.40 -0.67 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.19 1.95 8.06 -52.49 -0.42 1.53 16 32 H 0.40 4.22 6.56 -40.82 -0.27 3.95 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.10 1.35 7.40 -51.93 -0.38 0.96 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.05 0.50 7.35 -51.93 -0.38 0.12 16 37 H 0.37 2.66 9.12 45.56 0.42 3.07 16 38 H 0.35 5.48 6.41 -39.29 -0.25 5.22 16 39 H 0.04 0.56 8.06 -51.93 -0.42 0.14 16 40 H 0.09 1.21 7.36 -51.93 -0.38 0.83 16 41 H 0.37 7.36 5.76 -40.82 -0.24 7.12 16 42 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 374.00 15.07 5.64 5.64 Total: -1.00 -36.69 374.00 -7.07 -43.76 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: -4.40 Total: 18.20 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: -0.58 Total: 11.66 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: -0.34 Total: -62.78 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.27 Total: -29.83 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -4.71 Total: 14.02 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.40 Total: -0.67 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.69 -7.07 -43.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001676510234.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.990 kcal (2) G-P(sol) polarization free energy of solvation -36.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds